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Author SHA1 Message Date
amlrelsa-ms
883e4a4c59 update samples from Release-92 as a part of SDK release 2021-03-10 01:48:54 +00:00
Harneet Virk
e90826b331 Merge pull request #1384 from yunjie-hub/master
Add synapse sample notebooks
2021-03-09 12:40:33 -08:00
yunjie-hub
ac04172f6d Add files via upload 2021-03-09 12:38:23 -08:00
Harneet Virk
8c0000beb4 Merge pull request #1382 from Azure/release_update/Release-91
update samples from Release-91 as a part of  SDK release
2021-03-08 21:43:10 -08:00
amlrelsa-ms
35287ab0d8 update samples from Release-91 as a part of SDK release 2021-03-09 05:36:08 +00:00
Harneet Virk
3fe4f8b038 Merge pull request #1375 from Azure/release_update/Release-90
update samples from Release-90 as a part of  SDK release
2021-03-01 09:15:14 -08:00
amlrelsa-ms
1722678469 update samples from Release-90 as a part of SDK release 2021-03-01 17:13:25 +00:00
Harneet Virk
17da7e8706 Merge pull request #1364 from Azure/release_update/Release-89
update samples from Release-89 as a part of  SDK release
2021-02-23 17:27:27 -08:00
amlrelsa-ms
d2e7213ff3 update samples from Release-89 as a part of SDK release 2021-02-24 01:26:17 +00:00
mx-iao
882cb76e8a Merge pull request #1361 from Azure/minxia/distr-pytorch
Update distributed pytorch example
2021-02-23 12:07:20 -08:00
mx-iao
37f37a46c1 Delete pytorch_mnist.py 2021-02-23 11:19:39 -08:00
mx-iao
0cd1412421 Delete distributed-pytorch-with-nccl-gloo.ipynb 2021-02-23 11:19:33 -08:00
mx-iao
c3ae9f00f6 Add files via upload 2021-02-23 11:19:02 -08:00
mx-iao
11b02c650c Rename how-to-use-azureml/ml-frameworks/pytorch/distributed-pytorch-with-distributeddataparallel.ipynb to how-to-use-azureml/ml-frameworks/pytorch/distributed-pytorch-with-distributeddataparallel/distributed-pytorch-with-distributeddataparallel.ipynb 2021-02-23 11:18:43 -08:00
mx-iao
606048c71f Add files via upload 2021-02-23 11:18:10 -08:00
Harneet Virk
cb1c354d44 Merge pull request #1353 from Azure/release_update/Release-88
update samples from Release-88 as a part of  SDK release 1.23.0
2021-02-22 11:49:02 -08:00
amlrelsa-ms
c868fff5a2 update samples from Release-88 as a part of SDK release 2021-02-22 19:23:04 +00:00
Harneet Virk
bc4e6611c4 Merge pull request #1342 from Azure/release_update/Release-87
update samples from Release-87 as a part of  SDK release
2021-02-16 18:43:49 -08:00
amlrelsa-ms
0a58881b70 update samples from Release-87 as a part of SDK release 2021-02-17 02:13:51 +00:00
Harneet Virk
2544e85c5f Merge pull request #1333 from Azure/release_update/Release-85
SDK release 1.22.0
2021-02-10 07:59:22 -08:00
amlrelsa-ms
7fe27501d1 update samples from Release-85 as a part of SDK release 2021-02-10 15:27:28 +00:00
Harneet Virk
624c46e7f9 Merge pull request #1321 from Azure/release_update/Release-84
update samples from Release-84 as a part of  SDK release
2021-02-05 19:10:29 -08:00
amlrelsa-ms
40fbadd85c update samples from Release-84 as a part of SDK release 2021-02-06 03:09:22 +00:00
Harneet Virk
0c1fc25542 Merge pull request #1317 from Azure/release_update/Release-83
update samples from Release-83 as a part of  SDK release
2021-02-03 14:31:31 -08:00
amlrelsa-ms
e8e1357229 update samples from Release-83 as a part of SDK release 2021-02-03 05:22:32 +00:00
Harneet Virk
ad44f8fa2b Merge pull request #1313 from zronaghi/contrib-rapids
Update RAPIDS README
2021-01-29 10:33:47 -08:00
Zahra Ronaghi
ee63e759f0 Update RAPIDS README 2021-01-28 22:19:27 -06:00
Harneet Virk
b81d97ebbf Merge pull request #1303 from Azure/release_update/Release-82
update samples from Release-82 as a part of  SDK release 1.21.0
2021-01-25 11:09:12 -08:00
amlrelsa-ms
249fb6bbb5 update samples from Release-82 as a part of SDK release 2021-01-25 19:03:14 +00:00
Harneet Virk
cda1f3e4cf Merge pull request #1289 from Azure/release_update/Release-81
update samples from Release-81 as a part of  SDK release
2021-01-11 12:52:48 -07:00
amlrelsa-ms
1d05efaac2 update samples from Release-81 as a part of SDK release 2021-01-11 19:35:54 +00:00
Harneet Virk
3adebd1127 Merge pull request #1262 from Azure/release_update/Release-80
update samples from Release-80 as a part of  SDK release
2020-12-11 16:49:33 -08:00
amlrelsa-ms
a6817063df update samples from Release-80 as a part of SDK release 2020-12-12 00:45:42 +00:00
Harneet Virk
a79f8c254a Merge pull request #1255 from Azure/release_update/Release-79
update samples from Release-79 as a part of  SDK release
2020-12-07 11:11:32 -08:00
amlrelsa-ms
fb4f287458 update samples from Release-79 as a part of SDK release 2020-12-07 19:09:59 +00:00
Harneet Virk
41366a4af0 Merge pull request #1238 from Azure/release_update/Release-78
update samples from Release-78 as a part of  SDK release
2020-11-11 13:00:22 -08:00
amlrelsa-ms
74deb14fac update samples from Release-78 as a part of SDK release 2020-11-11 19:32:32 +00:00
Harneet Virk
4ed1d445ae Merge pull request #1236 from Azure/release_update/Release-77
update samples from Release-77 as a part of  SDK release
2020-11-10 10:52:23 -08:00
amlrelsa-ms
b5c15db0b4 update samples from Release-77 as a part of SDK release 2020-11-10 18:46:23 +00:00
Harneet Virk
91d43bade6 Merge pull request #1235 from Azure/release_update_stablev2/Release-44
update samples from Release-44 as a part of 1.18.0 SDK stable release
2020-11-10 08:52:24 -08:00
amlrelsa-ms
bd750f5817 update samples from Release-44 as a part of 1.18.0 SDK stable release 2020-11-10 03:42:03 +00:00
mx-iao
637bcc5973 Merge pull request #1229 from Azure/lostmygithubaccount-patch-3
Update README.md
2020-11-03 15:18:37 -10:00
Cody
ba741fb18d Update README.md 2020-11-03 17:16:28 -08:00
Harneet Virk
ac0ad8d487 Merge pull request #1228 from Azure/release_update/Release-76
update samples from Release-76 as a part of  SDK release
2020-11-03 16:12:15 -08:00
amlrelsa-ms
5019ad6c5a update samples from Release-76 as a part of SDK release 2020-11-03 22:31:02 +00:00
Cody
41a2ebd2b3 Merge pull request #1226 from Azure/lostmygithubaccount-patch-3
Update README.md
2020-11-03 11:25:10 -08:00
Cody
53e3283d1d Update README.md 2020-11-03 11:17:41 -08:00
Harneet Virk
ba9c4c5465 Merge pull request #1225 from Azure/release_update/Release-75
update samples from Release-75 as a part of  SDK release
2020-11-03 11:11:11 -08:00
amlrelsa-ms
a6c65f00ec update samples from Release-75 as a part of SDK release 2020-11-03 19:07:12 +00:00
Cody
95072eabc2 Merge pull request #1221 from Azure/lostmygithubaccount-patch-2
Update README.md
2020-11-02 11:52:05 -08:00
Cody
12905ef254 Update README.md 2020-11-02 06:59:44 -08:00
Harneet Virk
4cf56eee91 Merge pull request #1217 from Azure/release_update/Release-74
update samples from Release-74 as a part of  SDK release
2020-10-30 17:27:02 -07:00
amlrelsa-ms
d345ff6c37 update samples from Release-74 as a part of SDK release 2020-10-30 22:20:10 +00:00
Harneet Virk
560dcac0a0 Merge pull request #1214 from Azure/release_update/Release-73
update samples from Release-73 as a part of  SDK release
2020-10-29 23:38:02 -07:00
amlrelsa-ms
322087a58c update samples from Release-73 as a part of SDK release 2020-10-30 06:37:05 +00:00
Harneet Virk
e255c000ab Merge pull request #1211 from Azure/release_update/Release-72
update samples from Release-72 as a part of  SDK release
2020-10-28 14:30:50 -07:00
amlrelsa-ms
7871e37ec0 update samples from Release-72 as a part of SDK release 2020-10-28 21:24:40 +00:00
Cody
58e584e7eb Update README.md (#1209) 2020-10-27 21:00:38 -04:00
Harneet Virk
1b0d75cb45 Merge pull request #1206 from Azure/release_update/Release-71
update samples from Release-71 as a part of  SDK 1.17.0 release
2020-10-26 22:29:48 -07:00
amlrelsa-ms
5c38272fb4 update samples from Release-71 as a part of SDK release 2020-10-27 04:11:39 +00:00
Harneet Virk
e026c56f19 Merge pull request #1200 from Azure/cody/add-new-repo-link
update readme
2020-10-22 10:50:03 -07:00
Cody
4aad830f1c update readme 2020-10-22 09:13:20 -07:00
Harneet Virk
c1b125025a Merge pull request #1198 from harneetvirk/master
Fixing/Removing broken links
2020-10-20 12:30:46 -07:00
Harneet Virk
9f364f7638 Update README.md 2020-10-20 12:30:03 -07:00
Harneet Virk
4beb749a76 Fixing/Removing the broken links 2020-10-20 12:28:45 -07:00
Harneet Virk
04fe8c4580 Merge pull request #1191 from savitamittal1/patch-4
Update README.md
2020-10-17 08:48:20 -07:00
Harneet Virk
498018451a Merge pull request #1193 from savitamittal1/patch-6
Update automl-databricks-local-with-deployment.ipynb
2020-10-17 08:47:54 -07:00
savitamittal1
04305e33f0 Update automl-databricks-local-with-deployment.ipynb 2020-10-16 23:58:12 -07:00
savitamittal1
d22e76d5e0 Update README.md 2020-10-16 23:53:41 -07:00
Harneet Virk
d71c482f75 Merge pull request #1184 from Azure/release_update/Release-70
update samples from Release-70 as a part of  SDK 1.16.0 release
2020-10-12 22:24:25 -07:00
amlrelsa-ms
5775f8a78f update samples from Release-70 as a part of SDK release 2020-10-13 05:19:49 +00:00
Cody
aae823ecd8 Merge pull request #1181 from samuel100/quickstart-notebook
quickstart nb added
2020-10-09 10:54:32 -07:00
Sam Kemp
f1126e07f9 quickstart nb added 2020-10-09 10:35:19 +01:00
Harneet Virk
0e4b27a233 Merge pull request #1171 from savitamittal1/patch-2
Update automl-databricks-local-01.ipynb
2020-10-02 09:41:14 -07:00
Harneet Virk
0a3d5f68a1 Merge pull request #1172 from savitamittal1/patch-3
Update automl-databricks-local-with-deployment.ipynb
2020-10-02 09:41:02 -07:00
savitamittal1
a6fe2affcb Update automl-databricks-local-with-deployment.ipynb
fixed link to readme
2020-10-01 19:38:11 -07:00
savitamittal1
ce469ddf6a Update automl-databricks-local-01.ipynb
fixed link for readme
2020-10-01 19:36:06 -07:00
mx-iao
9fe459be79 Merge pull request #1166 from Azure/minxia/patch
patch for resume training notebook
2020-09-29 17:30:24 -07:00
mx-iao
89c35c8ed6 Update train-tensorflow-resume-training.ipynb 2020-09-29 17:28:17 -07:00
mx-iao
33168c7f5d Update train-tensorflow-resume-training.ipynb 2020-09-29 17:27:23 -07:00
Cody
1d0766bd46 Merge pull request #1165 from samuel100/quickstart-add
quickstart added
2020-09-29 13:13:36 -07:00
Sam Kemp
9903e56882 quickstart added 2020-09-29 21:09:55 +01:00
Harneet Virk
a039166b90 Merge pull request #1162 from Azure/release_update/Release-69
update samples from Release-69 as a part of  SDK 1.15.0 release
2020-09-28 23:54:05 -07:00
amlrelsa-ms
4e4bf48013 update samples from Release-69 as a part of SDK release 2020-09-29 06:48:31 +00:00
Harneet Virk
0a2408300a Merge pull request #1158 from Azure/release_update/Release-68
update samples from Release-68 as a part of  SDK release
2020-09-25 09:23:59 -07:00
247 changed files with 7766 additions and 14287 deletions

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@@ -28,7 +28,7 @@ git clone https://github.com/Azure/MachineLearningNotebooks.git
pip install azureml-sdk[notebooks,tensorboard]
# install model explainability component
pip install azureml-sdk[explain]
pip install azureml-sdk[interpret]
# install automated ml components
pip install azureml-sdk[automl]
@@ -86,7 +86,7 @@ If you need additional Azure ML SDK components, you can either modify the Docker
pip install azureml-sdk[automl]
# install the core SDK and model explainability component
pip install azureml-sdk[explain]
pip install azureml-sdk[interpret]
# install the core SDK and experimental components
pip install azureml-sdk[contrib]

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@@ -1,6 +1,8 @@
# Azure Machine Learning service example notebooks
This repository contains example notebooks demonstrating the [Azure Machine Learning](https://azure.microsoft.com/en-us/services/machine-learning-service/) Python SDK which allows you to build, train, deploy and manage machine learning solutions using Azure. The AML SDK allows you the choice of using local or cloud compute resources, while managing and maintaining the complete data science workflow from the cloud.
> a community-driven repository of examples using mlflow for tracking can be found at https://github.com/Azure/azureml-examples
This repository contains example notebooks demonstrating the [Azure Machine Learning](https://azure.microsoft.com/services/machine-learning-service/) Python SDK which allows you to build, train, deploy and manage machine learning solutions using Azure. The AML SDK allows you the choice of using local or cloud compute resources, while managing and maintaining the complete data science workflow from the cloud.
![Azure ML Workflow](https://raw.githubusercontent.com/MicrosoftDocs/azure-docs/master/articles/machine-learning/media/concept-azure-machine-learning-architecture/workflow.png)
@@ -18,10 +20,10 @@ This [index](./index.md) should assist in navigating the Azure Machine Learning
If you want to...
* ...try out and explore Azure ML, start with image classification tutorials: [Part 1 (Training)](./tutorials/image-classification-mnist-data/img-classification-part1-training.ipynb) and [Part 2 (Deployment)](./tutorials/image-classification-mnist-data/img-classification-part2-deploy.ipynb).
* ...learn about experimentation and tracking run history, first [train within Notebook](./how-to-use-azureml/training/train-within-notebook/train-within-notebook.ipynb), then try [training on remote VM](./how-to-use-azureml/training/train-on-remote-vm/train-on-remote-vm.ipynb) and [using logging APIs](./how-to-use-azureml/training/logging-api/logging-api.ipynb).
* ...train deep learning models at scale, first learn about [Machine Learning Compute](./how-to-use-azureml/training/train-on-amlcompute/train-on-amlcompute.ipynb), and then try [distributed hyperparameter tuning](./how-to-use-azureml/training-with-deep-learning/train-hyperparameter-tune-deploy-with-pytorch/train-hyperparameter-tune-deploy-with-pytorch.ipynb) and [distributed training](./how-to-use-azureml/training-with-deep-learning/distributed-pytorch-with-horovod/distributed-pytorch-with-horovod.ipynb).
* ...deploy models as a realtime scoring service, first learn the basics by [training within Notebook and deploying to Azure Container Instance](./how-to-use-azureml/training/train-within-notebook/train-within-notebook.ipynb), then learn how to [production deploy models on Azure Kubernetes Cluster](./how-to-use-azureml/deployment/production-deploy-to-aks/production-deploy-to-aks.ipynb).
* ...deploy models as a batch scoring service, first [train a model within Notebook](./how-to-use-azureml/training/train-within-notebook/train-within-notebook.ipynb), then [create Machine Learning Compute for scoring compute](./how-to-use-azureml/training/train-on-amlcompute/train-on-amlcompute.ipynb), and [use Machine Learning Pipelines to deploy your model](https://aka.ms/pl-batch-scoring).
* ...learn about experimentation and tracking run history: [track and monitor experiments](./how-to-use-azureml/track-and-monitor-experiments).
* ...train deep learning models at scale, first learn about [Machine Learning Compute](./how-to-use-azureml/training/train-on-amlcompute/train-on-amlcompute.ipynb), and then try [distributed hyperparameter tuning](./how-to-use-azureml/ml-frameworks/pytorch/train-hyperparameter-tune-deploy-with-pytorch/train-hyperparameter-tune-deploy-with-pytorch.ipynb) and [distributed training](./how-to-use-azureml/ml-frameworks/pytorch/distributed-pytorch-with-horovod/distributed-pytorch-with-horovod.ipynb).
* ...deploy models as a realtime scoring service, first learn the basics by [deploying to Azure Container Instance](./how-to-use-azureml/deployment/deploy-to-cloud/model-register-and-deploy.ipynb), then learn how to [production deploy models on Azure Kubernetes Cluster](./how-to-use-azureml/deployment/production-deploy-to-aks/production-deploy-to-aks.ipynb).
* ...deploy models as a batch scoring service: [create Machine Learning Compute for scoring compute](./how-to-use-azureml/training/train-on-amlcompute/train-on-amlcompute.ipynb) and [use Machine Learning Pipelines to deploy your model](https://aka.ms/pl-batch-scoring).
* ...monitor your deployed models, learn about using [App Insights](./how-to-use-azureml/deployment/enable-app-insights-in-production-service/enable-app-insights-in-production-service.ipynb).
## Tutorials
@@ -33,13 +35,12 @@ The [Tutorials](./tutorials) folder contains notebooks for the tutorials describ
The [How to use Azure ML](./how-to-use-azureml) folder contains specific examples demonstrating the features of the Azure Machine Learning SDK
- [Training](./how-to-use-azureml/training) - Examples of how to build models using Azure ML's logging and execution capabilities on local and remote compute targets
- [Training with Deep Learning](./how-to-use-azureml/training-with-deep-learning) - Examples demonstrating how to build deep learning models using estimators and parameter sweeps
- [Training with ML and DL frameworks](./how-to-use-azureml/ml-frameworks) - Examples demonstrating how to build and train machine learning models at scale on Azure ML and perform hyperparameter tuning.
- [Manage Azure ML Service](./how-to-use-azureml/manage-azureml-service) - Examples how to perform tasks, such as authenticate against Azure ML service in different ways.
- [Automated Machine Learning](./how-to-use-azureml/automated-machine-learning) - Examples using Automated Machine Learning to automatically generate optimal machine learning pipelines and models
- [Machine Learning Pipelines](./how-to-use-azureml/machine-learning-pipelines) - Examples showing how to create and use reusable pipelines for training and batch scoring
- [Deployment](./how-to-use-azureml/deployment) - Examples showing how to deploy and manage machine learning models and solutions
- [Azure Databricks](./how-to-use-azureml/azure-databricks) - Examples showing how to use Azure ML with Azure Databricks
- [Monitor Models](./how-to-use-azureml/monitor-models) - Examples showing how to enable model monitoring services such as DataDrift
- [Reinforcement Learning](./how-to-use-azureml/reinforcement-learning) - Examples showing how to train reinforcement learning agents
---
@@ -58,7 +59,6 @@ Visit this [community repository](https://github.com/microsoft/MLOps/tree/master
## Projects using Azure Machine Learning
Visit following repos to see projects contributed by Azure ML users:
- [AMLSamples](https://github.com/Azure/AMLSamples) Number of end-to-end examples, including face recognition, predictive maintenance, customer churn and sentiment analysis.
- [Learn about Natural Language Processing best practices using Azure Machine Learning service](https://github.com/microsoft/nlp)
- [Pre-Train BERT models using Azure Machine Learning service](https://github.com/Microsoft/AzureML-BERT)
- [Fashion MNIST with Azure ML SDK](https://github.com/amynic/azureml-sdk-fashion)

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@@ -103,7 +103,7 @@
"source": [
"import azureml.core\n",
"\n",
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},

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@@ -38,7 +38,7 @@
"## Introduction\n",
"This notebook shows how to use [Fairlearn (an open source fairness assessment and unfairness mitigation package)](http://fairlearn.github.io) and Azure Machine Learning Studio for a binary classification problem. This example uses the well-known adult census dataset. For the purposes of this notebook, we shall treat this as a loan decision problem. We will pretend that the label indicates whether or not each individual repaid a loan in the past. We will use the data to train a predictor to predict whether previously unseen individuals will repay a loan or not. The assumption is that the model predictions are used to decide whether an individual should be offered a loan. Its purpose is purely illustrative of a workflow including a fairness dashboard - in particular, we do **not** include a full discussion of the detailed issues which arise when considering fairness in machine learning. For such discussions, please [refer to the Fairlearn website](http://fairlearn.github.io/).\n",
"\n",
"We will apply the [grid search algorithm](https://fairlearn.github.io/api_reference/fairlearn.reductions.html#fairlearn.reductions.GridSearch) from the Fairlearn package using a specific notion of fairness called Demographic Parity. This produces a set of models, and we will view these in a dashboard both locally and in the Azure Machine Learning Studio.\n",
"We will apply the [grid search algorithm](https://fairlearn.github.io/master/api_reference/fairlearn.reductions.html#fairlearn.reductions.GridSearch) from the Fairlearn package using a specific notion of fairness called Demographic Parity. This produces a set of models, and we will view these in a dashboard both locally and in the Azure Machine Learning Studio.\n",
"\n",
"### Setup\n",
"\n",
@@ -46,7 +46,7 @@
"Please see the [configuration notebook](../../configuration.ipynb) for information about creating one, if required.\n",
"This notebook also requires the following packages:\n",
"* `azureml-contrib-fairness`\n",
"* `fairlearn==0.4.6`\n",
"* `fairlearn==0.4.6` (v0.5.0 will work with minor modifications)\n",
"* `joblib`\n",
"* `shap`\n",
"\n",
@@ -62,13 +62,20 @@
"# !pip install --upgrade scikit-learn>=0.22.1"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Finally, please ensure that when you downloaded this notebook, you also downloaded the `fairness_nb_utils.py` file from the same location, and placed it in the same directory as this notebook."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"<a id=\"LoadingData\"></a>\n",
"## Loading the Data\n",
"We use the well-known `adult` census dataset, which we load using `shap` (for convenience). We start with a fairly unremarkable set of imports:"
"We use the well-known `adult` census dataset, which we will fetch from the OpenML website. We start with a fairly unremarkable set of imports:"
]
},
{
@@ -79,89 +86,141 @@
"source": [
"from fairlearn.reductions import GridSearch, DemographicParity, ErrorRate\n",
"from fairlearn.widget import FairlearnDashboard\n",
"from sklearn import svm\n",
"from sklearn.preprocessing import LabelEncoder, StandardScaler\n",
"\n",
"from sklearn.compose import ColumnTransformer\n",
"from sklearn.datasets import fetch_openml\n",
"from sklearn.impute import SimpleImputer\n",
"from sklearn.linear_model import LogisticRegression\n",
"import pandas as pd\n",
"import shap"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We can now load and inspect the data from the `shap` package:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"X_raw, Y = shap.datasets.adult()\n",
"X_raw[\"Race\"].value_counts().to_dict()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We are going to treat the sex of each individual as a protected attribute (where 0 indicates female and 1 indicates male), and in this particular case we are going separate this attribute out and drop it from the main data (this is not always the best option - see the [Fairlearn website](http://fairlearn.github.io/) for further discussion). We also separate out the Race column, but we will not perform any mitigation based on it. Finally, we perform some standard data preprocessing steps to convert the data into a format suitable for the ML algorithms"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"A = X_raw[['Sex','Race']]\n",
"X = X_raw.drop(labels=['Sex', 'Race'],axis = 1)\n",
"X = pd.get_dummies(X)\n",
"\n",
"\n",
"le = LabelEncoder()\n",
"Y = le.fit_transform(Y)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"With our data prepared, we can make the conventional split in to 'test' and 'train' subsets:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from sklearn.model_selection import train_test_split\n",
"X_train, X_test, Y_train, Y_test, A_train, A_test = train_test_split(X_raw, \n",
" Y, \n",
" A,\n",
" test_size = 0.2,\n",
" random_state=0,\n",
" stratify=Y)\n",
"from sklearn.preprocessing import StandardScaler, OneHotEncoder\n",
"from sklearn.compose import make_column_selector as selector\n",
"from sklearn.pipeline import Pipeline\n",
"\n",
"import pandas as pd"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We can now load and inspect the data:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from fairness_nb_utils import fetch_openml_with_retries\n",
"\n",
"data = fetch_openml_with_retries(data_id=1590)\n",
" \n",
"# Extract the items we want\n",
"X_raw = data.data\n",
"y = (data.target == '>50K') * 1\n",
"\n",
"X_raw[\"race\"].value_counts().to_dict()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We are going to treat the sex and race of each individual as protected attributes, and in this particular case we are going to remove these attributes from the main data (this is not always the best option - see the [Fairlearn website](http://fairlearn.github.io/) for further discussion). Protected attributes are often denoted by 'A' in the literature, and we follow that convention here:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"A = X_raw[['sex','race']]\n",
"X_raw = X_raw.drop(labels=['sex', 'race'],axis = 1)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We now preprocess our data. To avoid the problem of data leakage, we split our data into training and test sets before performing any other transformations. Subsequent transformations (such as scalings) will be fit to the training data set, and then applied to the test dataset."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"(X_train, X_test, y_train, y_test, A_train, A_test) = train_test_split(\n",
" X_raw, y, A, test_size=0.3, random_state=12345, stratify=y\n",
")\n",
"\n",
"# Ensure indices are aligned between X, y and A,\n",
"# after all the slicing and splitting of DataFrames\n",
"# and Series\n",
"\n",
"# Work around indexing issue\n",
"X_train = X_train.reset_index(drop=True)\n",
"A_train = A_train.reset_index(drop=True)\n",
"X_test = X_test.reset_index(drop=True)\n",
"A_test = A_test.reset_index(drop=True)\n",
"y_train = y_train.reset_index(drop=True)\n",
"y_test = y_test.reset_index(drop=True)\n",
"A_train = A_train.reset_index(drop=True)\n",
"A_test = A_test.reset_index(drop=True)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We have two types of column in the dataset - categorical columns which will need to be one-hot encoded, and numeric ones which will need to be rescaled. We also need to take care of missing values. We use a simple approach here, but please bear in mind that this is another way that bias could be introduced (especially if one subgroup tends to have more missing values).\n",
"\n",
"# Improve labels\n",
"A_test.Sex.loc[(A_test['Sex'] == 0)] = 'female'\n",
"A_test.Sex.loc[(A_test['Sex'] == 1)] = 'male'\n",
"For this preprocessing, we make use of `Pipeline` objects from `sklearn`:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"numeric_transformer = Pipeline(\n",
" steps=[\n",
" (\"impute\", SimpleImputer()),\n",
" (\"scaler\", StandardScaler()),\n",
" ]\n",
")\n",
"\n",
"categorical_transformer = Pipeline(\n",
" [\n",
" (\"impute\", SimpleImputer(strategy=\"most_frequent\")),\n",
" (\"ohe\", OneHotEncoder(handle_unknown=\"ignore\", sparse=False)),\n",
" ]\n",
")\n",
"\n",
"A_test.Race.loc[(A_test['Race'] == 0)] = 'Amer-Indian-Eskimo'\n",
"A_test.Race.loc[(A_test['Race'] == 1)] = 'Asian-Pac-Islander'\n",
"A_test.Race.loc[(A_test['Race'] == 2)] = 'Black'\n",
"A_test.Race.loc[(A_test['Race'] == 3)] = 'Other'\n",
"A_test.Race.loc[(A_test['Race'] == 4)] = 'White'"
"preprocessor = ColumnTransformer(\n",
" transformers=[\n",
" (\"num\", numeric_transformer, selector(dtype_exclude=\"category\")),\n",
" (\"cat\", categorical_transformer, selector(dtype_include=\"category\")),\n",
" ]\n",
")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now, the preprocessing pipeline is defined, we can run it on our training data, and apply the generated transform to our test data:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"X_train = preprocessor.fit_transform(X_train)\n",
"X_test = preprocessor.transform(X_test)"
]
},
{
@@ -182,7 +241,7 @@
"source": [
"unmitigated_predictor = LogisticRegression(solver='liblinear', fit_intercept=True)\n",
"\n",
"unmitigated_predictor.fit(X_train, Y_train)"
"unmitigated_predictor.fit(X_train, y_train)"
]
},
{
@@ -199,7 +258,7 @@
"outputs": [],
"source": [
"FairlearnDashboard(sensitive_features=A_test, sensitive_feature_names=['Sex', 'Race'],\n",
" y_true=Y_test,\n",
" y_true=y_test,\n",
" y_pred={\"unmitigated\": unmitigated_predictor.predict(X_test)})"
]
},
@@ -250,9 +309,10 @@
"metadata": {},
"outputs": [],
"source": [
"sweep.fit(X_train, Y_train,\n",
" sensitive_features=A_train.Sex)\n",
"sweep.fit(X_train, y_train,\n",
" sensitive_features=A_train.sex)\n",
"\n",
"# For Fairlearn v0.5.0, need sweep.predictors_\n",
"predictors = sweep._predictors"
]
},
@@ -274,9 +334,9 @@
" classifier = lambda X: m.predict(X)\n",
" \n",
" error = ErrorRate()\n",
" error.load_data(X_train, pd.Series(Y_train), sensitive_features=A_train.Sex)\n",
" error.load_data(X_train, pd.Series(y_train), sensitive_features=A_train.sex)\n",
" disparity = DemographicParity()\n",
" disparity.load_data(X_train, pd.Series(Y_train), sensitive_features=A_train.Sex)\n",
" disparity.load_data(X_train, pd.Series(y_train), sensitive_features=A_train.sex)\n",
" \n",
" errors.append(error.gamma(classifier)[0])\n",
" disparities.append(disparity.gamma(classifier).max())\n",
@@ -330,7 +390,7 @@
"source": [
"FairlearnDashboard(sensitive_features=A_test, \n",
" sensitive_feature_names=['Sex', 'Race'],\n",
" y_true=Y_test.tolist(),\n",
" y_true=y_test.tolist(),\n",
" y_pred=predictions_dominant)"
]
},
@@ -338,7 +398,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"When using sex as the sensitive feature, we see a Pareto front forming - the set of predictors which represent optimal tradeoffs between accuracy and disparity in predictions. In the ideal case, we would have a predictor at (1,0) - perfectly accurate and without any unfairness under demographic parity (with respect to the protected attribute \"sex\"). The Pareto front represents the closest we can come to this ideal based on our data and choice of estimator. Note the range of the axes - the disparity axis covers more values than the accuracy, so we can reduce disparity substantially for a small loss in accuracy. Finally, we also see that the unmitigated model is towards the top right of the plot, with high accuracy, but worst disparity.\n",
"When using sex as the sensitive feature and accuracy as the metric, we see a Pareto front forming - the set of predictors which represent optimal tradeoffs between accuracy and disparity in predictions. In the ideal case, we would have a predictor at (1,0) - perfectly accurate and without any unfairness under demographic parity (with respect to the protected attribute \"sex\"). The Pareto front represents the closest we can come to this ideal based on our data and choice of estimator. Note the range of the axes - the disparity axis covers more values than the accuracy, so we can reduce disparity substantially for a small loss in accuracy. Finally, we also see that the unmitigated model is towards the top right of the plot, with high accuracy, but worst disparity.\n",
"\n",
"By clicking on individual models on the plot, we can inspect their metrics for disparity and accuracy in greater detail. In a real example, we would then pick the model which represented the best trade-off between accuracy and disparity given the relevant business constraints."
]
@@ -440,12 +500,12 @@
"metadata": {},
"outputs": [],
"source": [
"sf = { 'sex': A_test.Sex, 'race': A_test.Race }\n",
"sf = { 'sex': A_test.sex, 'race': A_test.race }\n",
"\n",
"from fairlearn.metrics._group_metric_set import _create_group_metric_set\n",
"\n",
"\n",
"dash_dict = _create_group_metric_set(y_true=Y_test,\n",
"dash_dict = _create_group_metric_set(y_true=y_test,\n",
" predictions=predictions_dominant_ids,\n",
" sensitive_features=sf,\n",
" prediction_type='binary_classification')"

View File

@@ -0,0 +1,7 @@
name: fairlearn-azureml-mitigation
dependencies:
- pip:
- azureml-sdk
- azureml-contrib-fairness
- fairlearn==0.4.6
- joblib

View File

@@ -0,0 +1,28 @@
# ---------------------------------------------------------
# Copyright (c) Microsoft Corporation. All rights reserved.
# ---------------------------------------------------------
"""Utilities for azureml-contrib-fairness notebooks."""
from sklearn.datasets import fetch_openml
import time
def fetch_openml_with_retries(data_id, max_retries=4, retry_delay=60):
"""Fetch a given dataset from OpenML with retries as specified."""
for i in range(max_retries):
try:
print("Download attempt {0} of {1}".format(i + 1, max_retries))
data = fetch_openml(data_id=data_id, as_frame=True)
break
except Exception as e:
print("Download attempt failed with exception:")
print(e)
if i + 1 != max_retries:
print("Will retry after {0} seconds".format(retry_delay))
time.sleep(retry_delay)
retry_delay = retry_delay * 2
else:
raise RuntimeError("Unable to download dataset from OpenML")
return data

View File

@@ -48,7 +48,7 @@
"Please see the [configuration notebook](../../configuration.ipynb) for information about creating one, if required.\n",
"This notebook also requires the following packages:\n",
"* `azureml-contrib-fairness`\n",
"* `fairlearn==0.4.6`\n",
"* `fairlearn==0.4.6` (should also work with v0.5.0)\n",
"* `joblib`\n",
"* `shap`\n",
"\n",
@@ -64,13 +64,20 @@
"# !pip install --upgrade scikit-learn>=0.22.1"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Finally, please ensure that when you downloaded this notebook, you also downloaded the `fairness_nb_utils.py` file from the same location, and placed it in the same directory as this notebook."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"<a id=\"LoadingData\"></a>\n",
"## Loading the Data\n",
"We use the well-known `adult` census dataset, which we load using `shap` (for convenience). We start with a fairly unremarkable set of imports:"
"We use the well-known `adult` census dataset, which we fetch from the OpenML website. We start with a fairly unremarkable set of imports:"
]
},
{
@@ -80,10 +87,14 @@
"outputs": [],
"source": [
"from sklearn import svm\n",
"from sklearn.preprocessing import LabelEncoder, StandardScaler\n",
"from sklearn.compose import ColumnTransformer\n",
"from sklearn.datasets import fetch_openml\n",
"from sklearn.impute import SimpleImputer\n",
"from sklearn.linear_model import LogisticRegression\n",
"import pandas as pd\n",
"import shap"
"from sklearn.model_selection import train_test_split\n",
"from sklearn.preprocessing import StandardScaler, OneHotEncoder\n",
"from sklearn.compose import make_column_selector as selector\n",
"from sklearn.pipeline import Pipeline"
]
},
{
@@ -99,7 +110,13 @@
"metadata": {},
"outputs": [],
"source": [
"X_raw, Y = shap.datasets.adult()"
"from fairness_nb_utils import fetch_openml_with_retries\n",
"\n",
"data = fetch_openml_with_retries(data_id=1590)\n",
" \n",
"# Extract the items we want\n",
"X_raw = data.data\n",
"y = (data.target == '>50K') * 1"
]
},
{
@@ -115,7 +132,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(X_raw[\"Race\"].value_counts().to_dict())"
"print(X_raw[\"race\"].value_counts().to_dict())"
]
},
{
@@ -125,7 +142,7 @@
"<a id=\"ProcessingData\"></a>\n",
"## Processing the Data\n",
"\n",
"With the data loaded, we process it for our needs. First, we extract the sensitive features of interest into `A` (conventionally used in the literature) and put the rest of the feature data into `X`:"
"With the data loaded, we process it for our needs. First, we extract the sensitive features of interest into `A` (conventionally used in the literature) and leave the rest of the feature data in `X_raw`:"
]
},
{
@@ -134,16 +151,15 @@
"metadata": {},
"outputs": [],
"source": [
"A = X_raw[['Sex','Race']]\n",
"X = X_raw.drop(labels=['Sex', 'Race'],axis = 1)\n",
"X = pd.get_dummies(X)"
"A = X_raw[['sex','race']]\n",
"X_raw = X_raw.drop(labels=['sex', 'race'],axis = 1)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Next, we apply a standard set of scalings:"
"We now preprocess our data. To avoid the problem of data leakage, we split our data into training and test sets before performing any other transformations. Subsequent transformations (such as scalings) will be fit to the training data set, and then applied to the test dataset."
]
},
{
@@ -152,51 +168,74 @@
"metadata": {},
"outputs": [],
"source": [
"sc = StandardScaler()\n",
"X_scaled = sc.fit_transform(X)\n",
"X_scaled = pd.DataFrame(X_scaled, columns=X.columns)\n",
"(X_train, X_test, y_train, y_test, A_train, A_test) = train_test_split(\n",
" X_raw, y, A, test_size=0.3, random_state=12345, stratify=y\n",
")\n",
"\n",
"le = LabelEncoder()\n",
"Y = le.fit_transform(Y)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Finally, we can then split our data into training and test sets, and also make the labels on our test portion of `A` human-readable:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from sklearn.model_selection import train_test_split\n",
"X_train, X_test, Y_train, Y_test, A_train, A_test = train_test_split(X_scaled, \n",
" Y, \n",
" A,\n",
" test_size = 0.2,\n",
" random_state=0,\n",
" stratify=Y)\n",
"# Ensure indices are aligned between X, y and A,\n",
"# after all the slicing and splitting of DataFrames\n",
"# and Series\n",
"\n",
"# Work around indexing issue\n",
"X_train = X_train.reset_index(drop=True)\n",
"A_train = A_train.reset_index(drop=True)\n",
"X_test = X_test.reset_index(drop=True)\n",
"A_test = A_test.reset_index(drop=True)\n",
"y_train = y_train.reset_index(drop=True)\n",
"y_test = y_test.reset_index(drop=True)\n",
"A_train = A_train.reset_index(drop=True)\n",
"A_test = A_test.reset_index(drop=True)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We have two types of column in the dataset - categorical columns which will need to be one-hot encoded, and numeric ones which will need to be rescaled. We also need to take care of missing values. We use a simple approach here, but please bear in mind that this is another way that bias could be introduced (especially if one subgroup tends to have more missing values).\n",
"\n",
"# Improve labels\n",
"A_test.Sex.loc[(A_test['Sex'] == 0)] = 'female'\n",
"A_test.Sex.loc[(A_test['Sex'] == 1)] = 'male'\n",
"For this preprocessing, we make use of `Pipeline` objects from `sklearn`:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"numeric_transformer = Pipeline(\n",
" steps=[\n",
" (\"impute\", SimpleImputer()),\n",
" (\"scaler\", StandardScaler()),\n",
" ]\n",
")\n",
"\n",
"categorical_transformer = Pipeline(\n",
" [\n",
" (\"impute\", SimpleImputer(strategy=\"most_frequent\")),\n",
" (\"ohe\", OneHotEncoder(handle_unknown=\"ignore\", sparse=False)),\n",
" ]\n",
")\n",
"\n",
"A_test.Race.loc[(A_test['Race'] == 0)] = 'Amer-Indian-Eskimo'\n",
"A_test.Race.loc[(A_test['Race'] == 1)] = 'Asian-Pac-Islander'\n",
"A_test.Race.loc[(A_test['Race'] == 2)] = 'Black'\n",
"A_test.Race.loc[(A_test['Race'] == 3)] = 'Other'\n",
"A_test.Race.loc[(A_test['Race'] == 4)] = 'White'"
"preprocessor = ColumnTransformer(\n",
" transformers=[\n",
" (\"num\", numeric_transformer, selector(dtype_exclude=\"category\")),\n",
" (\"cat\", categorical_transformer, selector(dtype_include=\"category\")),\n",
" ]\n",
")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now, the preprocessing pipeline is defined, we can run it on our training data, and apply the generated transform to our test data:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"X_train = preprocessor.fit_transform(X_train)\n",
"X_test = preprocessor.transform(X_test)"
]
},
{
@@ -217,7 +256,7 @@
"source": [
"lr_predictor = LogisticRegression(solver='liblinear', fit_intercept=True)\n",
"\n",
"lr_predictor.fit(X_train, Y_train)"
"lr_predictor.fit(X_train, y_train)"
]
},
{
@@ -235,7 +274,7 @@
"source": [
"svm_predictor = svm.SVC()\n",
"\n",
"svm_predictor.fit(X_train, Y_train)"
"svm_predictor.fit(X_train, y_train)"
]
},
{
@@ -354,7 +393,7 @@
"\n",
"FairlearnDashboard(sensitive_features=A_test, \n",
" sensitive_feature_names=['Sex', 'Race'],\n",
" y_true=Y_test.tolist(),\n",
" y_true=y_test.tolist(),\n",
" y_pred=ys_pred)"
]
},
@@ -380,11 +419,11 @@
"metadata": {},
"outputs": [],
"source": [
"sf = { 'Race': A_test.Race, 'Sex': A_test.Sex }\n",
"sf = { 'Race': A_test.race, 'Sex': A_test.sex }\n",
"\n",
"from fairlearn.metrics._group_metric_set import _create_group_metric_set\n",
"\n",
"dash_dict = _create_group_metric_set(y_true=Y_test,\n",
"dash_dict = _create_group_metric_set(y_true=y_test,\n",
" predictions=ys_pred,\n",
" sensitive_features=sf,\n",
" prediction_type='binary_classification')"
@@ -499,7 +538,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.8"
"version": "3.6.10"
}
},
"nbformat": 4,

View File

@@ -0,0 +1,7 @@
name: upload-fairness-dashboard
dependencies:
- pip:
- azureml-sdk
- azureml-contrib-fairness
- fairlearn==0.4.6
- joblib

View File

@@ -97,62 +97,96 @@ jupyter notebook
<a name="databricks"></a>
## Setup using Azure Databricks
**NOTE**: Please create your Azure Databricks cluster as v6.0 (high concurrency preferred) with **Python 3** (dropdown).
**NOTE**: Please create your Azure Databricks cluster as v7.1 (high concurrency preferred) with **Python 3** (dropdown).
**NOTE**: You should at least have contributor access to your Azure subcription to run the notebook.
- Please remove the previous SDK version if there is any and install the latest SDK by installing **azureml-sdk[automl]** as a PyPi library in Azure Databricks workspace.
- You can find the detail Readme instructions at [GitHub](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/azure-databricks).
- Download the sample notebook automl-databricks-local-01.ipynb from [GitHub](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/azure-databricks) and import into the Azure databricks workspace.
- You can find the detail Readme instructions at [GitHub](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/azure-databricks/automl).
- Download the sample notebook automl-databricks-local-01.ipynb from [GitHub](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/azure-databricks/automl) and import into the Azure databricks workspace.
- Attach the notebook to the cluster.
<a name="samples"></a>
# Automated ML SDK Sample Notebooks
- [auto-ml-classification-credit-card-fraud.ipynb](classification-credit-card-fraud/auto-ml-classification-credit-card-fraud.ipynb)
- Dataset: Kaggle's [credit card fraud detection dataset](https://www.kaggle.com/mlg-ulb/creditcardfraud)
- Simple example of using automated ML for classification to fraudulent credit card transactions
- Uses azure compute for training
## Classification
- **Classify Credit Card Fraud**
- Dataset: [Kaggle's credit card fraud detection dataset](https://www.kaggle.com/mlg-ulb/creditcardfraud)
- **[Jupyter Notebook (remote run)](classification-credit-card-fraud/auto-ml-classification-credit-card-fraud.ipynb)**
- run the experiment remotely on AML Compute cluster
- test the performance of the best model in the local environment
- **[Jupyter Notebook (local run)](local-run-classification-credit-card-fraud/auto-ml-classification-credit-card-fraud-local.ipynb)**
- run experiment in the local environment
- use Mimic Explainer for computing feature importance
- deploy the best model along with the explainer to an Azure Kubernetes (AKS) cluster, which will compute the raw and engineered feature importances at inference time
- **Predict Term Deposit Subscriptions in a Bank**
- Dataset: [UCI's bank marketing dataset](https://www.kaggle.com/janiobachmann/bank-marketing-dataset)
- **[Jupyter Notebook](classification-bank-marketing-all-features/auto-ml-classification-bank-marketing-all-features.ipynb)**
- run experiment remotely on AML Compute cluster to generate ONNX compatible models
- view the featurization steps that were applied during training
- view feature importance for the best model
- download the best model in ONNX format and use it for inferencing using ONNXRuntime
- deploy the best model in PKL format to Azure Container Instance (ACI)
- **Predict Newsgroup based on Text from News Article**
- Dataset: [20 newsgroups text dataset](https://scikit-learn.org/0.19/datasets/twenty_newsgroups.html)
- **[Jupyter Notebook](classification-text-dnn/auto-ml-classification-text-dnn.ipynb)**
- AutoML highlights here include using deep neural networks (DNNs) to create embedded features from text data
- AutoML will use Bidirectional Encoder Representations from Transformers (BERT) when a GPU compute is used
- Bidirectional Long-Short Term neural network (BiLSTM) will be utilized when a CPU compute is used, thereby optimizing the choice of DNN
- [auto-ml-regression.ipynb](regression/auto-ml-regression.ipynb)
## Regression
- **Predict Performance of Hardware Parts**
- Dataset: Hardware Performance Dataset
- Simple example of using automated ML for regression
- Uses azure compute for training
- **[Jupyter Notebook](regression/auto-ml-regression.ipynb)**
- run the experiment remotely on AML Compute cluster
- get best trained model for a different metric than the one the experiment was optimized for
- test the performance of the best model in the local environment
- **[Jupyter Notebook (advanced)](regression/auto-ml-regression.ipynb)**
- run the experiment remotely on AML Compute cluster
- customize featurization: override column purpose within the dataset, configure transformer parameters
- get best trained model for a different metric than the one the experiment was optimized for
- run a model explanation experiment on the remote cluster
- deploy the model along the explainer and run online inferencing
- [auto-ml-regression-explanation-featurization.ipynb](regression-explanation-featurization/auto-ml-regression-explanation-featurization.ipynb)
- Dataset: Hardware Performance Dataset
- Shows featurization and excplanation
- Uses azure compute for training
- [auto-ml-forecasting-energy-demand.ipynb](forecasting-energy-demand/auto-ml-forecasting-energy-demand.ipynb)
- Dataset: [NYC energy demand data](forecasting-a/nyc_energy.csv)
- Example of using automated ML for training a forecasting model
- [auto-ml-classification-credit-card-fraud-local.ipynb](local-run-classification-credit-card-fraud/auto-ml-classification-credit-card-fraud-local.ipynb)
- Dataset: Kaggle's [credit card fraud detection dataset](https://www.kaggle.com/mlg-ulb/creditcardfraud)
- Simple example of using automated ML for classification to fraudulent credit card transactions
- Uses local compute for training
- [auto-ml-classification-bank-marketing-all-features.ipynb](classification-bank-marketing-all-features/auto-ml-classification-bank-marketing-all-features.ipynb)
- Dataset: UCI's [bank marketing dataset](https://www.kaggle.com/janiobachmann/bank-marketing-dataset)
- Simple example of using automated ML for classification to predict term deposit subscriptions for a bank
- Uses azure compute for training
- [auto-ml-forecasting-orange-juice-sales.ipynb](forecasting-orange-juice-sales/auto-ml-forecasting-orange-juice-sales.ipynb)
- Dataset: [Dominick's grocery sales of orange juice](forecasting-b/dominicks_OJ.csv)
- Example of training an automated ML forecasting model on multiple time-series
- [auto-ml-forecasting-bike-share.ipynb](forecasting-bike-share/auto-ml-forecasting-bike-share.ipynb)
- Dataset: forecasting for a bike-sharing
- Example of training an automated ML forecasting model on multiple time-series
- [auto-ml-forecasting-function.ipynb](forecasting-forecast-function/auto-ml-forecasting-function.ipynb)
- Example of training an automated ML forecasting model on multiple time-series
- [auto-ml-forecasting-beer-remote.ipynb](forecasting-beer-remote/auto-ml-forecasting-beer-remote.ipynb)
- Example of training an automated ML forecasting model on multiple time-series
- Beer Production Forecasting
- [auto-ml-continuous-retraining.ipynb](continuous-retraining/auto-ml-continuous-retraining.ipynb)
- Continuous retraining using Pipelines and Time-Series TabularDataset
## Time Series Forecasting
- **Forecast Energy Demand**
- Dataset: [NYC energy demand data](http://mis.nyiso.com/public/P-58Blist.htm)
- **[Jupyter Notebook](forecasting-energy-demand/auto-ml-forecasting-energy-demand.ipynb)**
- run experiment remotely on AML Compute cluster
- use lags and rolling window features
- view the featurization steps that were applied during training
- get the best model, use it to forecast on test data and compare the accuracy of predictions against real data
- **Forecast Orange Juice Sales (Multi-Series)**
- Dataset: [Dominick's grocery sales of orange juice](forecasting-orange-juice-sales/dominicks_OJ.csv)
- **[Jupyter Notebook](forecasting-orange-juice-sales/dominicks_OJ.csv)**
- run experiment remotely on AML Compute cluster
- customize time-series featurization, change column purpose and override transformer hyper parameters
- evaluate locally the performance of the generated best model
- deploy the best model as a webservice on Azure Container Instance (ACI)
- get online predictions from the deployed model
- **Forecast Demand of a Bike-Sharing Service**
- Dataset: [Bike demand data](forecasting-bike-share/bike-no.csv)
- **[Jupyter Notebook](forecasting-bike-share/auto-ml-forecasting-bike-share.ipynb)**
- run experiment remotely on AML Compute cluster
- integrate holiday features
- run rolling forecast for test set that is longer than the forecast horizon
- compute metrics on the predictions from the remote forecast
- **The Forecast Function Interface**
- Dataset: Generated for sample purposes
- **[Jupyter Notebook](forecasting-forecast-function/auto-ml-forecasting-function.ipynb)**
- train a forecaster using a remote AML Compute cluster
- capabilities of forecast function (e.g. forecast farther into the horizon)
- generate confidence intervals
- **Forecast Beverage Production**
- Dataset: [Monthly beer production data](forecasting-beer-remote/Beer_no_valid_split_train.csv)
- **[Jupyter Notebook](forecasting-beer-remote/auto-ml-forecasting-beer-remote.ipynb)**
- train using a remote AML Compute cluster
- enable the DNN learning model
- forecast on a remote compute cluster and compare different model performance
- **Continuous Retraining with NOAA Weather Data**
- Dataset: [NOAA weather data from Azure Open Datasets](https://azure.microsoft.com/en-us/services/open-datasets/)
- **[Jupyter Notebook](continuous-retraining/auto-ml-continuous-retraining.ipynb)**
- continuously retrain a model using Pipelines and AutoML
- create a Pipeline to upload a time series dataset to an Azure blob
- create a Pipeline to run an AutoML experiment and register the best resulting model in the Workspace
- publish the training pipeline created and schedule it to run daily
<a name="documentation"></a>
See [Configure automated machine learning experiments](https://docs.microsoft.com/azure/machine-learning/service/how-to-configure-auto-train) to learn how more about the the settings and features available for automated machine learning experiments.
@@ -173,7 +207,7 @@ The main code of the file must be indented so that it is under this condition.
## automl_setup fails
1. On Windows, make sure that you are running automl_setup from an Anconda Prompt window rather than a regular cmd window. You can launch the "Anaconda Prompt" window by hitting the Start button and typing "Anaconda Prompt". If you don't see the application "Anaconda Prompt", you might not have conda or mini conda installed. In that case, you can install it [here](https://conda.io/miniconda.html)
2. Check that you have conda 64-bit installed rather than 32-bit. You can check this with the command `conda info`. The `platform` should be `win-64` for Windows or `osx-64` for Mac.
3. Check that you have conda 4.4.10 or later. You can check the version with the command `conda -V`. If you have a previous version installed, you can update it using the command: `conda update conda`.
3. Check that you have conda 4.7.8 or later. You can check the version with the command `conda -V`. If you have a previous version installed, you can update it using the command: `conda update conda`.
4. On Linux, if the error is `gcc: error trying to exec 'cc1plus': execvp: No such file or directory`, install build essentials using the command `sudo apt-get install build-essential`.
5. Pass a new name as the first parameter to automl_setup so that it creates a new conda environment. You can view existing conda environments using `conda env list` and remove them with `conda env remove -n <environmentname>`.

View File

@@ -2,14 +2,15 @@ name: azure_automl
dependencies:
# The python interpreter version.
# Currently Azure ML only supports 3.5.2 and later.
- pip<=19.3.1
- python>=3.5.2,<3.6.8
- pip==20.2.4
- python>=3.5.2,<3.8
- nb_conda
- boto3==1.15.18
- matplotlib==2.1.0
- numpy~=1.18.0
- numpy==1.18.5
- cython
- urllib3<1.24
- scipy==1.4.1
- scipy>=1.4.1,<=1.5.2
- scikit-learn==0.22.1
- pandas==0.25.1
- py-xgboost<=0.90
@@ -20,9 +21,8 @@ dependencies:
- pip:
# Required packages for AzureML execution, history, and data preparation.
- azureml-widgets
- azureml-widgets~=1.24.0
- pytorch-transformers==1.0.0
- spacy==2.1.8
- https://aka.ms/automl-resources/packages/en_core_web_sm-2.1.0.tar.gz
- -r https://automlcesdkdataresources.blob.core.windows.net/validated-requirements/1.14.0/validated_win32_requirements.txt [--no-deps]
- -r https://automlcesdkdataresources.blob.core.windows.net/validated-requirements/1.24.0/validated_win32_requirements.txt [--no-deps]

View File

@@ -2,14 +2,15 @@ name: azure_automl
dependencies:
# The python interpreter version.
# Currently Azure ML only supports 3.5.2 and later.
- pip<=19.3.1
- python>=3.5.2,<3.6.8
- pip==20.2.4
- python>=3.5.2,<3.8
- nb_conda
- boto3==1.15.18
- matplotlib==2.1.0
- numpy~=1.18.0
- numpy==1.18.5
- cython
- urllib3<1.24
- scipy==1.4.1
- scipy>=1.4.1,<=1.5.2
- scikit-learn==0.22.1
- pandas==0.25.1
- py-xgboost<=0.90
@@ -20,9 +21,8 @@ dependencies:
- pip:
# Required packages for AzureML execution, history, and data preparation.
- azureml-widgets
- azureml-widgets~=1.24.0
- pytorch-transformers==1.0.0
- spacy==2.1.8
- https://aka.ms/automl-resources/packages/en_core_web_sm-2.1.0.tar.gz
- -r https://automlcesdkdataresources.blob.core.windows.net/validated-requirements/1.14.0/validated_linux_requirements.txt [--no-deps]
- -r https://automlcesdkdataresources.blob.core.windows.net/validated-requirements/1.24.0/validated_linux_requirements.txt [--no-deps]

View File

@@ -2,15 +2,16 @@ name: azure_automl
dependencies:
# The python interpreter version.
# Currently Azure ML only supports 3.5.2 and later.
- pip<=19.3.1
- pip==20.2.4
- nomkl
- python>=3.5.2,<3.6.8
- python>=3.5.2,<3.8
- nb_conda
- boto3==1.15.18
- matplotlib==2.1.0
- numpy~=1.18.0
- numpy==1.18.5
- cython
- urllib3<1.24
- scipy==1.4.1
- scipy>=1.4.1,<=1.5.2
- scikit-learn==0.22.1
- pandas==0.25.1
- py-xgboost<=0.90
@@ -21,8 +22,8 @@ dependencies:
- pip:
# Required packages for AzureML execution, history, and data preparation.
- azureml-widgets
- azureml-widgets~=1.24.0
- pytorch-transformers==1.0.0
- spacy==2.1.8
- https://aka.ms/automl-resources/packages/en_core_web_sm-2.1.0.tar.gz
- -r https://automlcesdkdataresources.blob.core.windows.net/validated-requirements/1.14.0/validated_darwin_requirements.txt [--no-deps]
- -r https://automlcesdkdataresources.blob.core.windows.net/validated-requirements/1.24.0/validated_darwin_requirements.txt [--no-deps]

View File

@@ -6,11 +6,22 @@ set PIP_NO_WARN_SCRIPT_LOCATION=0
IF "%conda_env_name%"=="" SET conda_env_name="azure_automl"
IF "%automl_env_file%"=="" SET automl_env_file="automl_env.yml"
SET check_conda_version_script="check_conda_version.py"
IF NOT EXIST %automl_env_file% GOTO YmlMissing
IF "%CONDA_EXE%"=="" GOTO CondaMissing
IF NOT EXIST %check_conda_version_script% GOTO VersionCheckMissing
python "%check_conda_version_script%"
IF errorlevel 1 GOTO ErrorExit:
SET replace_version_script="replace_latest_version.ps1"
IF EXIST %replace_version_script% (
powershell -file %replace_version_script% %automl_env_file%
)
call conda activate %conda_env_name% 2>nul:
if not errorlevel 1 (
@@ -54,6 +65,10 @@ echo If you are running an older version of Miniconda or Anaconda,
echo you can upgrade using the command: conda update conda
goto End
:VersionCheckMissing
echo File %check_conda_version_script% not found.
goto End
:YmlMissing
echo File %automl_env_file% not found.

View File

@@ -4,6 +4,7 @@ CONDA_ENV_NAME=$1
AUTOML_ENV_FILE=$2
OPTIONS=$3
PIP_NO_WARN_SCRIPT_LOCATION=0
CHECK_CONDA_VERSION_SCRIPT="check_conda_version.py"
if [ "$CONDA_ENV_NAME" == "" ]
then
@@ -20,6 +21,18 @@ if [ ! -f $AUTOML_ENV_FILE ]; then
exit 1
fi
if [ ! -f $CHECK_CONDA_VERSION_SCRIPT ]; then
echo "File $CHECK_CONDA_VERSION_SCRIPT not found"
exit 1
fi
python "$CHECK_CONDA_VERSION_SCRIPT"
if [ $? -ne 0 ]; then
exit 1
fi
sed -i 's/AZUREML-SDK-VERSION/latest/' $AUTOML_ENV_FILE
if source activate $CONDA_ENV_NAME 2> /dev/null
then
echo "Upgrading existing conda environment" $CONDA_ENV_NAME

View File

@@ -4,6 +4,7 @@ CONDA_ENV_NAME=$1
AUTOML_ENV_FILE=$2
OPTIONS=$3
PIP_NO_WARN_SCRIPT_LOCATION=0
CHECK_CONDA_VERSION_SCRIPT="check_conda_version.py"
if [ "$CONDA_ENV_NAME" == "" ]
then
@@ -20,6 +21,18 @@ if [ ! -f $AUTOML_ENV_FILE ]; then
exit 1
fi
if [ ! -f $CHECK_CONDA_VERSION_SCRIPT ]; then
echo "File $CHECK_CONDA_VERSION_SCRIPT not found"
exit 1
fi
python "$CHECK_CONDA_VERSION_SCRIPT"
if [ $? -ne 0 ]; then
exit 1
fi
sed -i '' 's/AZUREML-SDK-VERSION/latest/' $AUTOML_ENV_FILE
if source activate $CONDA_ENV_NAME 2> /dev/null
then
echo "Upgrading existing conda environment" $CONDA_ENV_NAME

View File

@@ -0,0 +1,26 @@
from distutils.version import LooseVersion
import platform
try:
import conda
except:
print('Failed to import conda.')
print('This setup is usually run from the base conda environment.')
print('You can activate the base environment using the command "conda activate base"')
exit(1)
architecture = platform.architecture()[0]
if architecture != "64bit":
print('This setup requires 64bit Anaconda or Miniconda. Found: ' + architecture)
exit(1)
minimumVersion = "4.7.8"
versionInvalid = (LooseVersion(conda.__version__) < LooseVersion(minimumVersion))
if versionInvalid:
print('Setup requires conda version ' + minimumVersion + ' or higher.')
print('You can use the command "conda update conda" to upgrade conda.')
exit(versionInvalid)

View File

@@ -89,7 +89,7 @@
"from azureml.automl.core.featurization import FeaturizationConfig\n",
"from azureml.core.dataset import Dataset\n",
"from azureml.train.automl import AutoMLConfig\n",
"from azureml.interpret._internal.explanation_client import ExplanationClient"
"from azureml.interpret import ExplanationClient"
]
},
{
@@ -105,7 +105,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -167,7 +167,7 @@
"You will need to create a compute target for your AutoML run. In this tutorial, you create AmlCompute as your training compute resource.\n",
"#### Creation of AmlCompute takes approximately 5 minutes. \n",
"If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read this article on the default limits and how to request more quota."
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."
]
},
{
@@ -899,7 +899,7 @@
"metadata": {
"authors": [
{
"name": "anumamah"
"name": "ratanase"
}
],
"category": "tutorial",

View File

@@ -93,7 +93,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -424,22 +424,33 @@
"source": [
"This Credit Card fraud Detection dataset is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/ and is available at: https://www.kaggle.com/mlg-ulb/creditcardfraud\n",
"\n",
"The dataset has been collected and analysed during a research collaboration of Worldline and the Machine Learning Group (http://mlg.ulb.ac.be) of ULB (Universit\u00c3\u00a9 Libre de Bruxelles) on big data mining and fraud detection.\n",
"More details on current and past projects on related topics are available on https://www.researchgate.net/project/Fraud-detection-5 and the page of the DefeatFraud project\n",
"\n",
"The dataset has been collected and analysed during a research collaboration of Worldline and the Machine Learning Group (http://mlg.ulb.ac.be) of ULB (Universit\u00c3\u0192\u00c2\u00a9 Libre de Bruxelles) on big data mining and fraud detection. More details on current and past projects on related topics are available on https://www.researchgate.net/project/Fraud-detection-5 and the page of the DefeatFraud project\n",
"Please cite the following works:\n",
"\u00c3\u00a2\u00e2\u201a\u00ac\u00c2\u00a2\tAndrea Dal Pozzolo, Olivier Caelen, Reid A. Johnson and Gianluca Bontempi. Calibrating Probability with Undersampling for Unbalanced Classification. In Symposium on Computational Intelligence and Data Mining (CIDM), IEEE, 2015\n",
"\u00c3\u00a2\u00e2\u201a\u00ac\u00c2\u00a2\tDal Pozzolo, Andrea; Caelen, Olivier; Le Borgne, Yann-Ael; Waterschoot, Serge; Bontempi, Gianluca. Learned lessons in credit card fraud detection from a practitioner perspective, Expert systems with applications,41,10,4915-4928,2014, Pergamon\n",
"\u00c3\u00a2\u00e2\u201a\u00ac\u00c2\u00a2\tDal Pozzolo, Andrea; Boracchi, Giacomo; Caelen, Olivier; Alippi, Cesare; Bontempi, Gianluca. Credit card fraud detection: a realistic modeling and a novel learning strategy, IEEE transactions on neural networks and learning systems,29,8,3784-3797,2018,IEEE\n",
"o\tDal Pozzolo, Andrea Adaptive Machine learning for credit card fraud detection ULB MLG PhD thesis (supervised by G. Bontempi)\n",
"\u00c3\u00a2\u00e2\u201a\u00ac\u00c2\u00a2\tCarcillo, Fabrizio; Dal Pozzolo, Andrea; Le Borgne, Yann-A\u00c3\u0192\u00c2\u00abl; Caelen, Olivier; Mazzer, Yannis; Bontempi, Gianluca. Scarff: a scalable framework for streaming credit card fraud detection with Spark, Information fusion,41, 182-194,2018,Elsevier\n",
"\u00c3\u00a2\u00e2\u201a\u00ac\u00c2\u00a2\tCarcillo, Fabrizio; Le Borgne, Yann-A\u00c3\u0192\u00c2\u00abl; Caelen, Olivier; Bontempi, Gianluca. Streaming active learning strategies for real-life credit card fraud detection: assessment and visualization, International Journal of Data Science and Analytics, 5,4,285-300,2018,Springer International Publishing"
"\n",
"Andrea Dal Pozzolo, Olivier Caelen, Reid A. Johnson and Gianluca Bontempi. Calibrating Probability with Undersampling for Unbalanced Classification. In Symposium on Computational Intelligence and Data Mining (CIDM), IEEE, 2015\n",
"\n",
"Dal Pozzolo, Andrea; Caelen, Olivier; Le Borgne, Yann-Ael; Waterschoot, Serge; Bontempi, Gianluca. Learned lessons in credit card fraud detection from a practitioner perspective, Expert systems with applications,41,10,4915-4928,2014, Pergamon\n",
"\n",
"Dal Pozzolo, Andrea; Boracchi, Giacomo; Caelen, Olivier; Alippi, Cesare; Bontempi, Gianluca. Credit card fraud detection: a realistic modeling and a novel learning strategy, IEEE transactions on neural networks and learning systems,29,8,3784-3797,2018,IEEE\n",
"\n",
"Dal Pozzolo, Andrea Adaptive Machine learning for credit card fraud detection ULB MLG PhD thesis (supervised by G. Bontempi)\n",
"\n",
"Carcillo, Fabrizio; Dal Pozzolo, Andrea; Le Borgne, Yann-A\u00c3\u00abl; Caelen, Olivier; Mazzer, Yannis; Bontempi, Gianluca. Scarff: a scalable framework for streaming credit card fraud detection with Spark, Information fusion,41, 182-194,2018,Elsevier\n",
"\n",
"Carcillo, Fabrizio; Le Borgne, Yann-A\u00c3\u00abl; Caelen, Olivier; Bontempi, Gianluca. Streaming active learning strategies for real-life credit card fraud detection: assessment and visualization, International Journal of Data Science and Analytics, 5,4,285-300,2018,Springer International Publishing\n",
"\n",
"Bertrand Lebichot, Yann-A\u00c3\u00abl Le Borgne, Liyun He, Frederic Obl\u00c3\u00a9, Gianluca Bontempi Deep-Learning Domain Adaptation Techniques for Credit Cards Fraud Detection, INNSBDDL 2019: Recent Advances in Big Data and Deep Learning, pp 78-88, 2019\n",
"\n",
"Fabrizio Carcillo, Yann-A\u00c3\u00abl Le Borgne, Olivier Caelen, Frederic Obl\u00c3\u00a9, Gianluca Bontempi Combining Unsupervised and Supervised Learning in Credit Card Fraud Detection Information Sciences, 2019"
]
}
],
"metadata": {
"authors": [
{
"name": "tzvikei"
"name": "ratanase"
}
],
"category": "tutorial",

View File

@@ -0,0 +1,589 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/automated-machine-learning/classification-text-dnn/auto-ml-classification-text-dnn.png)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Automated Machine Learning\n",
"_**Text Classification Using Deep Learning**_\n",
"\n",
"## Contents\n",
"1. [Introduction](#Introduction)\n",
"1. [Setup](#Setup)\n",
"1. [Data](#Data)\n",
"1. [Train](#Train)\n",
"1. [Evaluate](#Evaluate)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Introduction\n",
"This notebook demonstrates classification with text data using deep learning in AutoML.\n",
"\n",
"AutoML highlights here include using deep neural networks (DNNs) to create embedded features from text data. Depending on the compute cluster the user provides, AutoML tried out Bidirectional Encoder Representations from Transformers (BERT) when a GPU compute is used, and Bidirectional Long-Short Term neural network (BiLSTM) when a CPU compute is used, thereby optimizing the choice of DNN for the uesr's setup.\n",
"\n",
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
"\n",
"Notebook synopsis:\n",
"\n",
"1. Creating an Experiment in an existing Workspace\n",
"2. Configuration and remote run of AutoML for a text dataset (20 Newsgroups dataset from scikit-learn) for classification\n",
"3. Registering the best model for future use\n",
"4. Evaluating the final model on a test set"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Setup"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import logging\n",
"import os\n",
"import shutil\n",
"\n",
"import pandas as pd\n",
"\n",
"import azureml.core\n",
"from azureml.core.experiment import Experiment\n",
"from azureml.core.workspace import Workspace\n",
"from azureml.core.dataset import Dataset\n",
"from azureml.core.compute import AmlCompute\n",
"from azureml.core.compute import ComputeTarget\n",
"from azureml.core.run import Run\n",
"from azureml.widgets import RunDetails\n",
"from azureml.core.model import Model \n",
"from helper import run_inference, get_result_df\n",
"from azureml.train.automl import AutoMLConfig\n",
"from sklearn.datasets import fetch_20newsgroups"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"This sample notebook may use features that are not available in previous versions of the Azure ML SDK."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"As part of the setup you have already created a <b>Workspace</b>. To run AutoML, you also need to create an <b>Experiment</b>. An Experiment corresponds to a prediction problem you are trying to solve, while a Run corresponds to a specific approach to the problem."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ws = Workspace.from_config()\n",
"\n",
"# Choose an experiment name.\n",
"experiment_name = 'automl-classification-text-dnn'\n",
"\n",
"experiment = Experiment(ws, experiment_name)\n",
"\n",
"output = {}\n",
"output['Subscription ID'] = ws.subscription_id\n",
"output['Workspace Name'] = ws.name\n",
"output['Resource Group'] = ws.resource_group\n",
"output['Location'] = ws.location\n",
"output['Experiment Name'] = experiment.name\n",
"pd.set_option('display.max_colwidth', -1)\n",
"outputDf = pd.DataFrame(data = output, index = [''])\n",
"outputDf.T"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Set up a compute cluster\n",
"This section uses a user-provided compute cluster (named \"dnntext-cluster\" in this example). If a cluster with this name does not exist in the user's workspace, the below code will create a new cluster. You can choose the parameters of the cluster as mentioned in the comments.\n",
"\n",
"Whether you provide/select a CPU or GPU cluster, AutoML will choose the appropriate DNN for that setup - BiLSTM or BERT text featurizer will be included in the candidate featurizers on CPU and GPU respectively. If your goal is to obtain the most accurate model, we recommend you use GPU clusters since BERT featurizers usually outperform BiLSTM featurizers."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.compute import ComputeTarget, AmlCompute\n",
"from azureml.core.compute_target import ComputeTargetException\n",
"\n",
"num_nodes = 2\n",
"\n",
"# Choose a name for your cluster.\n",
"amlcompute_cluster_name = \"dnntext-cluster\"\n",
"\n",
"# Verify that cluster does not exist already\n",
"try:\n",
" compute_target = ComputeTarget(workspace=ws, name=amlcompute_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size = \"STANDARD_NC6\", # CPU for BiLSTM, such as \"STANDARD_D2_V2\" \n",
" # To use BERT (this is recommended for best performance), select a GPU such as \"STANDARD_NC6\" \n",
" # or similar GPU option\n",
" # available in your workspace\n",
" max_nodes = num_nodes)\n",
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, compute_config)\n",
"\n",
"compute_target.wait_for_completion(show_output=True)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Get data\n",
"For this notebook we will use 20 Newsgroups data from scikit-learn. We filter the data to contain four classes and take a sample as training data. Please note that for accuracy improvement, more data is needed. For this notebook we provide a small-data example so that you can use this template to use with your larger sized data."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"data_dir = \"text-dnn-data\" # Local directory to store data\n",
"blobstore_datadir = data_dir # Blob store directory to store data in\n",
"target_column_name = 'y'\n",
"feature_column_name = 'X'\n",
"\n",
"def get_20newsgroups_data():\n",
" '''Fetches 20 Newsgroups data from scikit-learn\n",
" Returns them in form of pandas dataframes\n",
" '''\n",
" remove = ('headers', 'footers', 'quotes')\n",
" categories = [\n",
" 'rec.sport.baseball',\n",
" 'rec.sport.hockey',\n",
" 'comp.graphics',\n",
" 'sci.space',\n",
" ]\n",
"\n",
" data = fetch_20newsgroups(subset = 'train', categories = categories,\n",
" shuffle = True, random_state = 42,\n",
" remove = remove)\n",
" data = pd.DataFrame({feature_column_name: data.data, target_column_name: data.target})\n",
"\n",
" data_train = data[:200]\n",
" data_test = data[200:300] \n",
"\n",
" data_train = remove_blanks_20news(data_train, feature_column_name, target_column_name)\n",
" data_test = remove_blanks_20news(data_test, feature_column_name, target_column_name)\n",
" \n",
" return data_train, data_test\n",
" \n",
"def remove_blanks_20news(data, feature_column_name, target_column_name):\n",
" \n",
" data[feature_column_name] = data[feature_column_name].replace(r'\\n', ' ', regex=True).apply(lambda x: x.strip())\n",
" data = data[data[feature_column_name] != '']\n",
" \n",
" return data"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Fetch data and upload to datastore for use in training"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"data_train, data_test = get_20newsgroups_data()\n",
"\n",
"if not os.path.isdir(data_dir):\n",
" os.mkdir(data_dir)\n",
" \n",
"train_data_fname = data_dir + '/train_data.csv'\n",
"test_data_fname = data_dir + '/test_data.csv'\n",
"\n",
"data_train.to_csv(train_data_fname, index=False)\n",
"data_test.to_csv(test_data_fname, index=False)\n",
"\n",
"datastore = ws.get_default_datastore()\n",
"datastore.upload(src_dir=data_dir, target_path=blobstore_datadir,\n",
" overwrite=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"train_dataset = Dataset.Tabular.from_delimited_files(path = [(datastore, blobstore_datadir + '/train_data.csv')])"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Prepare AutoML run"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"This notebook uses the blocked_models parameter to exclude some models that can take a longer time to train on some text datasets. You can choose to remove models from the blocked_models list but you may need to increase the experiment_timeout_hours parameter value to get results."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"automl_settings = {\n",
" \"experiment_timeout_minutes\": 20,\n",
" \"primary_metric\": 'accuracy',\n",
" \"max_concurrent_iterations\": num_nodes, \n",
" \"max_cores_per_iteration\": -1,\n",
" \"enable_dnn\": True,\n",
" \"enable_early_stopping\": True,\n",
" \"validation_size\": 0.3,\n",
" \"verbosity\": logging.INFO,\n",
" \"enable_voting_ensemble\": False,\n",
" \"enable_stack_ensemble\": False,\n",
"}\n",
"\n",
"automl_config = AutoMLConfig(task = 'classification',\n",
" debug_log = 'automl_errors.log',\n",
" compute_target=compute_target,\n",
" training_data=train_dataset,\n",
" label_column_name=target_column_name,\n",
" blocked_models = ['LightGBM', 'XGBoostClassifier'],\n",
" **automl_settings\n",
" )"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Submit AutoML Run"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"automl_run = experiment.submit(automl_config, show_output=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"automl_run"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Displaying the run objects gives you links to the visual tools in the Azure Portal. Go try them!"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Retrieve the Best Model\n",
"Below we select the best model pipeline from our iterations, use it to test on test data on the same compute cluster."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"You can test the model locally to get a feel of the input/output. When the model contains BERT, this step will require pytorch and pytorch-transformers installed in your local environment. The exact versions of these packages can be found in the **automl_env.yml** file located in the local copy of your MachineLearningNotebooks folder here:\n",
"MachineLearningNotebooks/how-to-use-azureml/automated-machine-learning/automl_env.yml"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"best_run, fitted_model = automl_run.get_output()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"You can now see what text transformations are used to convert text data to features for this dataset, including deep learning transformations based on BiLSTM or Transformer (BERT is one implementation of a Transformer) models."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"text_transformations_used = []\n",
"for column_group in fitted_model.named_steps['datatransformer'].get_featurization_summary():\n",
" text_transformations_used.extend(column_group['Transformations'])\n",
"text_transformations_used"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Registering the best model\n",
"We now register the best fitted model from the AutoML Run for use in future deployments. "
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Get results stats, extract the best model from AutoML run, download and register the resultant best model"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"summary_df = get_result_df(automl_run)\n",
"best_dnn_run_id = summary_df['run_id'].iloc[0]\n",
"best_dnn_run = Run(experiment, best_dnn_run_id)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"model_dir = 'Model' # Local folder where the model will be stored temporarily\n",
"if not os.path.isdir(model_dir):\n",
" os.mkdir(model_dir)\n",
" \n",
"best_dnn_run.download_file('outputs/model.pkl', model_dir + '/model.pkl')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Register the model in your Azure Machine Learning Workspace. If you previously registered a model, please make sure to delete it so as to replace it with this new model."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Register the model\n",
"model_name = 'textDNN-20News'\n",
"model = Model.register(model_path = model_dir + '/model.pkl',\n",
" model_name = model_name,\n",
" tags=None,\n",
" workspace=ws)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Evaluate on Test Data"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We now use the best fitted model from the AutoML Run to make predictions on the test set. \n",
"\n",
"Test set schema should match that of the training set."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"test_dataset = Dataset.Tabular.from_delimited_files(path = [(datastore, blobstore_datadir + '/test_data.csv')])\n",
"\n",
"# preview the first 3 rows of the dataset\n",
"test_dataset.take(3).to_pandas_dataframe()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"test_experiment = Experiment(ws, experiment_name + \"_test\")"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"script_folder = os.path.join(os.getcwd(), 'inference')\n",
"os.makedirs(script_folder, exist_ok=True)\n",
"shutil.copy('infer.py', script_folder)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"test_run = run_inference(test_experiment, compute_target, script_folder, best_dnn_run,\n",
" train_dataset, test_dataset, target_column_name, model_name)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Display computed metrics"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"test_run"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"RunDetails(test_run).show()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"test_run.wait_for_completion()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"pd.Series(test_run.get_metrics())"
]
}
],
"metadata": {
"authors": [
{
"name": "anshirga"
}
],
"compute": [
"AML Compute"
],
"datasets": [
"None"
],
"deployment": [
"None"
],
"exclude_from_index": false,
"framework": [
"None"
],
"friendly_name": "DNN Text Featurization",
"index_order": 2,
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.7"
},
"tags": [
"None"
],
"task": "Text featurization using DNNs for classification"
},
"nbformat": 4,
"nbformat_minor": 2
}

View File

@@ -0,0 +1,4 @@
name: auto-ml-classification-text-dnn
dependencies:
- pip:
- azureml-sdk

View File

@@ -0,0 +1,56 @@
import pandas as pd
from azureml.core import Environment
from azureml.train.estimator import Estimator
from azureml.core.run import Run
def run_inference(test_experiment, compute_target, script_folder, train_run,
train_dataset, test_dataset, target_column_name, model_name):
inference_env = train_run.get_environment()
est = Estimator(source_directory=script_folder,
entry_script='infer.py',
script_params={
'--target_column_name': target_column_name,
'--model_name': model_name
},
inputs=[
train_dataset.as_named_input('train_data'),
test_dataset.as_named_input('test_data')
],
compute_target=compute_target,
environment_definition=inference_env)
run = test_experiment.submit(
est, tags={
'training_run_id': train_run.id,
'run_algorithm': train_run.properties['run_algorithm'],
'valid_score': train_run.properties['score'],
'primary_metric': train_run.properties['primary_metric']
})
run.log("run_algorithm", run.tags['run_algorithm'])
return run
def get_result_df(remote_run):
children = list(remote_run.get_children(recursive=True))
summary_df = pd.DataFrame(index=['run_id', 'run_algorithm',
'primary_metric', 'Score'])
goal_minimize = False
for run in children:
if('run_algorithm' in run.properties and 'score' in run.properties):
summary_df[run.id] = [run.id, run.properties['run_algorithm'],
run.properties['primary_metric'],
float(run.properties['score'])]
if('goal' in run.properties):
goal_minimize = run.properties['goal'].split('_')[-1] == 'min'
summary_df = summary_df.T.sort_values(
'Score',
ascending=goal_minimize).drop_duplicates(['run_algorithm'])
summary_df = summary_df.set_index('run_algorithm')
return summary_df

View File

@@ -0,0 +1,60 @@
import argparse
import numpy as np
from sklearn.externals import joblib
from azureml.automl.runtime.shared.score import scoring, constants
from azureml.core import Run
from azureml.core.model import Model
parser = argparse.ArgumentParser()
parser.add_argument(
'--target_column_name', type=str, dest='target_column_name',
help='Target Column Name')
parser.add_argument(
'--model_name', type=str, dest='model_name',
help='Name of registered model')
args = parser.parse_args()
target_column_name = args.target_column_name
model_name = args.model_name
print('args passed are: ')
print('Target column name: ', target_column_name)
print('Name of registered model: ', model_name)
model_path = Model.get_model_path(model_name)
# deserialize the model file back into a sklearn model
model = joblib.load(model_path)
run = Run.get_context()
# get input dataset by name
test_dataset = run.input_datasets['test_data']
train_dataset = run.input_datasets['train_data']
X_test_df = test_dataset.drop_columns(columns=[target_column_name]) \
.to_pandas_dataframe()
y_test_df = test_dataset.with_timestamp_columns(None) \
.keep_columns(columns=[target_column_name]) \
.to_pandas_dataframe()
y_train_df = test_dataset.with_timestamp_columns(None) \
.keep_columns(columns=[target_column_name]) \
.to_pandas_dataframe()
predicted = model.predict_proba(X_test_df)
# Use the AutoML scoring module
class_labels = np.unique(np.concatenate((y_train_df.values, y_test_df.values)))
train_labels = model.classes_
classification_metrics = list(constants.CLASSIFICATION_SCALAR_SET)
scores = scoring.score_classification(y_test_df.values, predicted,
classification_metrics,
class_labels, train_labels)
print("scores:")
print(scores)
for key, value in scores.items():
run.log(key, value)

View File

@@ -32,13 +32,6 @@
"8. [Test Retraining](#Test-Retraining)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"An Enterprise workspace is required for this notebook. To learn more about creating an Enterprise workspace or upgrading to an Enterprise workspace from the Azure portal, please visit our [Workspace page.](https://docs.microsoft.com/azure/machine-learning/service/concept-workspace#upgrade)"
]
},
{
"cell_type": "markdown",
"metadata": {},
@@ -88,7 +81,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -150,7 +143,7 @@
"You will need to create a compute target for your AutoML run. In this tutorial, you create AmlCompute as your training compute resource.\n",
"#### Creation of AmlCompute takes approximately 5 minutes. \n",
"If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read this article on the default limits and how to request more quota."
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."
]
},
{
@@ -190,7 +183,7 @@
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.runconfig import CondaDependencies, DEFAULT_CPU_IMAGE, RunConfiguration\n",
"from azureml.core.runconfig import CondaDependencies, RunConfiguration\n",
"\n",
"# create a new RunConfig object\n",
"conda_run_config = RunConfiguration(framework=\"python\")\n",
@@ -199,7 +192,6 @@
"conda_run_config.target = compute_target\n",
"\n",
"conda_run_config.environment.docker.enabled = True\n",
"conda_run_config.environment.docker.base_image = azureml.core.runconfig.DEFAULT_CPU_IMAGE\n",
"\n",
"cd = CondaDependencies.create(pip_packages=['azureml-sdk[automl]', 'applicationinsights', 'azureml-opendatasets', 'azureml-defaults'], \n",
" conda_packages=['numpy==1.16.2'], \n",

View File

@@ -17,16 +17,16 @@ There's no need to install mini-conda specifically.
- Download the sample notebooks from [GitHub](https://github.com/Azure/MachineLearningNotebooks) as zip and extract the contents to a local directory. The automated ML sample notebooks are in the "automated-machine-learning" folder.
### 3. Setup a new conda environment
The **automl_setup** script creates a new conda environment, installs the necessary packages, configures the widget and starts a jupyter notebook. It takes the conda environment name as an optional parameter. The default conda environment name is azure_automl. The exact command depends on the operating system. See the specific sections below for Windows, Mac and Linux. It can take about 10 minutes to execute.
The **automl_setup_thin_client** script creates a new conda environment, installs the necessary packages, configures the widget and starts a jupyter notebook. It takes the conda environment name as an optional parameter. The default conda environment name is azure_automl_experimental. The exact command depends on the operating system. See the specific sections below for Windows, Mac and Linux. It can take about 10 minutes to execute.
Packages installed by the **automl_setup** script:
<ul><li>python</li><li>nb_conda</li><li>matplotlib</li><li>numpy</li><li>cython</li><li>urllib3</li><li>pandas</li><li>azureml-sdk</li><li>azureml-widgets</li><li>pandas-ml</li></ul>
For more details refer to the [automl_env.yml](./automl_env.yml)
For more details refer to the [automl_env_thin_client.yml](./automl_env_thin_client.yml)
## Windows
Start an **Anaconda Prompt** window, cd to the **how-to-use-azureml/automated-machine-learning/experimental** folder where the sample notebooks were extracted and then run:
```
automl_setup
automl_setup_thin_client
```
## Mac
Install "Command line developer tools" if it is not already installed (you can use the command: `xcode-select --install`).
@@ -34,14 +34,14 @@ Install "Command line developer tools" if it is not already installed (you can u
Start a Terminal windows, cd to the **how-to-use-azureml/automated-machine-learning/experimental** folder where the sample notebooks were extracted and then run:
```
bash automl_setup_mac.sh
bash automl_setup_thin_client_mac.sh
```
## Linux
cd to the **how-to-use-azureml/automated-machine-learning/experimental** folder where the sample notebooks were extracted and then run:
```
bash automl_setup_linux.sh
bash automl_setup_thin_client_linux.sh
```
### 4. Running configuration.ipynb
@@ -49,7 +49,7 @@ bash automl_setup_linux.sh
- Execute the cells in the notebook to Register Machine Learning Services Resource Provider and create a workspace. (*instructions in notebook*)
### 5. Running Samples
- Please make sure you use the Python [conda env:azure_automl] kernel when trying the sample Notebooks.
- Please make sure you use the Python [conda env:azure_automl_experimental] kernel when trying the sample Notebooks.
- Follow the instructions in the individual notebooks to explore various features in automated ML.
### 6. Starting jupyter notebook manually
@@ -71,7 +71,7 @@ jupyter notebook
<a name="samples"></a>
# Automated ML SDK Sample Notebooks
- [auto-ml-regression.ipynb](regression/auto-ml-regression.ipynb)
- [auto-ml-regression-model-proxy.ipynb](regression-model-proxy/auto-ml-regression-model-proxy.ipynb)
- Dataset: Hardware Performance Dataset
- Simple example of using automated ML for regression
- Uses azure compute for training

View File

@@ -5,7 +5,7 @@ set options=%3
set PIP_NO_WARN_SCRIPT_LOCATION=0
IF "%conda_env_name%"=="" SET conda_env_name="azure_automl_experimental"
IF "%automl_env_file%"=="" SET automl_env_file="automl_env.yml"
IF "%automl_env_file%"=="" SET automl_env_file="automl_thin_client_env.yml"
IF NOT EXIST %automl_env_file% GOTO YmlMissing

View File

@@ -12,7 +12,7 @@ fi
if [ "$AUTOML_ENV_FILE" == "" ]
then
AUTOML_ENV_FILE="automl_env.yml"
AUTOML_ENV_FILE="automl_thin_client_env.yml"
fi
if [ ! -f $AUTOML_ENV_FILE ]; then

View File

@@ -12,7 +12,7 @@ fi
if [ "$AUTOML_ENV_FILE" == "" ]
then
AUTOML_ENV_FILE="automl_env.yml"
AUTOML_ENV_FILE="automl_thin_client_env_mac.yml"
fi
if [ ! -f $AUTOML_ENV_FILE ]; then

View File

@@ -5,16 +5,14 @@ dependencies:
- pip<=19.3.1
- python>=3.5.2,<3.8
- nb_conda
- matplotlib==2.1.0
- numpy~=1.18.0
- cython
- urllib3<1.24
- scikit-learn==0.22.1
- pandas==0.25.1
- PyJWT < 2.0.0
- numpy==1.18.5
- pip:
# Required packages for AzureML execution, history, and data preparation.
- azureml-defaults
- azureml-sdk
- azureml-widgets
- azureml-explain-model
- pandas

View File

@@ -6,16 +6,14 @@ dependencies:
- nomkl
- python>=3.5.2,<3.8
- nb_conda
- matplotlib==2.1.0
- numpy~=1.18.0
- cython
- urllib3<1.24
- scikit-learn==0.22.1
- pandas==0.25.1
- PyJWT < 2.0.0
- numpy==1.18.5
- pip:
# Required packages for AzureML execution, history, and data preparation.
- azureml-defaults
- azureml-sdk
- azureml-widgets
- azureml-explain-model
- pandas

View File

@@ -13,7 +13,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/automated-machine-learning/experimental/regression/auto-ml-regression.png)"
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/automated-machine-learning/experimental/regression-model-proxy/auto-ml-regression-model-proxy.png)"
]
},
{
@@ -38,7 +38,7 @@
"metadata": {},
"source": [
"## Introduction\n",
"In this example we use the Hardware Performance Dataset to showcase how you can use AutoML for a simple regression problem. The Regression goal is to predict the performance of certain combinations of hardware parts.\n",
"In this example we use an experimental feature, Model Proxy, to do a predict on the best generated model without downloading the model locally. The prediction will happen on same compute and environment that was used to train the model. This feature is currently in the experimental state, which means that the API is prone to changing, please make sure to run on the latest version of this notebook if you face any issues.\n",
"\n",
"If you are using an Azure Machine Learning Compute Instance, you are all set. Otherwise, go through the [configuration](../../../../configuration.ipynb) notebook first if you haven't already to establish your connection to the AzureML Workspace. \n",
"\n",
@@ -67,9 +67,7 @@
"source": [
"import logging\n",
"\n",
"from matplotlib import pyplot as plt\n",
"import numpy as np\n",
"import pandas as pd\n",
"import json\n",
"\n",
"\n",
"import azureml.core\n",
@@ -92,7 +90,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -115,9 +113,7 @@
"output['Resource Group'] = ws.resource_group\n",
"output['Location'] = ws.location\n",
"output['Run History Name'] = experiment_name\n",
"pd.set_option('display.max_colwidth', -1)\n",
"outputDf = pd.DataFrame(data = output, index = [''])\n",
"outputDf.T"
"output"
]
},
{
@@ -138,7 +134,8 @@
"from azureml.core.compute_target import ComputeTargetException\n",
"\n",
"# Choose a name for your CPU cluster\n",
"cpu_cluster_name = \"reg-cluster\"\n",
"# Try to ensure that the cluster name is unique across the notebooks\n",
"cpu_cluster_name = \"reg-model-proxy\"\n",
"\n",
"# Verify that cluster does not exist already\n",
"try:\n",
@@ -272,34 +269,13 @@
"## Results"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Widget for Monitoring Runs\n",
"\n",
"The widget will first report a \"loading\" status while running the first iteration. After completing the first iteration, an auto-updating graph and table will be shown. The widget will refresh once per minute, so you should see the graph update as child runs complete.\n",
"\n",
"**Note:** The widget displays a link at the bottom. Use this link to open a web interface to explore the individual run details."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.widgets import RunDetails\n",
"RunDetails(remote_run).show() "
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"remote_run.wait_for_completion()"
"remote_run.wait_for_completion(show_output=True)"
]
},
{
@@ -321,6 +297,24 @@
"print(best_run)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Show hyperparameters\n",
"Show the model pipeline used for the best run with its hyperparameters."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"run_properties = json.loads(best_run.get_details()['properties']['pipeline_script'])\n",
"print(json.dumps(run_properties, indent = 1)) "
]
},
{
"cell_type": "markdown",
"metadata": {},
@@ -346,18 +340,12 @@
"metadata": {},
"outputs": [],
"source": [
"# preview the first 3 rows of the dataset\n",
"\n",
"test_data = test_data.to_pandas_dataframe()\n",
"y_test = test_data['ERP'].fillna(0)\n",
"test_data = test_data.drop('ERP', 1)\n",
"test_data = test_data.fillna(0)\n",
"y_test = test_data.keep_columns('ERP')\n",
"test_data = test_data.drop_columns('ERP')\n",
"\n",
"\n",
"train_data = train_data.to_pandas_dataframe()\n",
"y_train = train_data['ERP'].fillna(0)\n",
"train_data = train_data.drop('ERP', 1)\n",
"train_data = train_data.fillna(0)\n"
"y_train = train_data.keep_columns('ERP')\n",
"train_data = train_data.drop_columns('ERP')\n"
]
},
{
@@ -375,7 +363,16 @@
"outputs": [],
"source": [
"from azureml.train.automl.model_proxy import ModelProxy\n",
"best_model_proxy = ModelProxy(best_run)"
"best_model_proxy = ModelProxy(best_run)\n",
"y_pred_train = best_model_proxy.predict(train_data)\n",
"y_pred_test = best_model_proxy.predict(test_data)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Exploring results"
]
},
{
@@ -384,60 +381,15 @@
"metadata": {},
"outputs": [],
"source": [
"y_pred_train = best_model_proxy.predict(train_data).to_pandas_dataframe()\n",
"y_pred_train = y_pred_train.to_pandas_dataframe().values.flatten()\n",
"y_train = y_train.to_pandas_dataframe().values.flatten()\n",
"y_residual_train = y_train - y_pred_train\n",
"\n",
"y_pred_test = best_model_proxy.predict(test_data).to_pandas_dataframe()\n",
"y_residual_test = y_test - y_pred_test"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"%matplotlib inline\n",
"from sklearn.metrics import mean_squared_error, r2_score\n",
"\n",
"# Set up a multi-plot chart.\n",
"f, (a0, a1) = plt.subplots(1, 2, gridspec_kw = {'width_ratios':[1, 1], 'wspace':0, 'hspace': 0})\n",
"f.suptitle('Regression Residual Values', fontsize = 18)\n",
"f.set_figheight(6)\n",
"f.set_figwidth(16)\n",
"\n",
"# Plot residual values of training set.\n",
"a0.axis([0, 360, -100, 100])\n",
"a0.plot(y_residual_train, 'bo', alpha = 0.5)\n",
"a0.plot([-10,360],[0,0], 'r-', lw = 3)\n",
"a0.text(16,170,'RMSE = {0:.2f}'.format(np.sqrt(mean_squared_error(y_train, y_pred_train))), fontsize = 12)\n",
"a0.text(16,140,'R2 score = {0:.2f}'.format(r2_score(y_train, y_pred_train)),fontsize = 12)\n",
"a0.set_xlabel('Training samples', fontsize = 12)\n",
"a0.set_ylabel('Residual Values', fontsize = 12)\n",
"\n",
"# Plot residual values of test set.\n",
"a1.axis([0, 90, -100, 100])\n",
"a1.plot(y_residual_test, 'bo', alpha = 0.5)\n",
"a1.plot([-10,360],[0,0], 'r-', lw = 3)\n",
"a1.text(5,170,'RMSE = {0:.2f}'.format(np.sqrt(mean_squared_error(y_test, y_pred_test))), fontsize = 12)\n",
"a1.text(5,140,'R2 score = {0:.2f}'.format(r2_score(y_test, y_pred_test)),fontsize = 12)\n",
"a1.set_xlabel('Test samples', fontsize = 12)\n",
"a1.set_yticklabels([])\n",
"\n",
"plt.show()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"%matplotlib inline\n",
"test_pred = plt.scatter(y_test, y_pred_test, color='')\n",
"test_test = plt.scatter(y_test, y_test, color='g')\n",
"plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
"plt.show()"
"y_pred_test = y_pred_test.to_pandas_dataframe().values.flatten()\n",
"y_test = y_test.to_pandas_dataframe().values.flatten()\n",
"y_residual_test = y_test - y_pred_test\n",
"print(y_residual_train)\n",
"print(y_residual_test)"
]
},
{
@@ -451,7 +403,7 @@
"metadata": {
"authors": [
{
"name": "rakellam"
"name": "sekrupa"
}
],
"categories": [

View File

@@ -54,9 +54,8 @@
"\n",
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
"\n",
"An Enterprise workspace is required for this notebook. To learn more about creating an Enterprise workspace or upgrading to an Enterprise workspace from the Azure portal, please visit our [Workspace page.](https://docs.microsoft.com/azure/machine-learning/service/concept-workspace#upgrade)\n",
"\n",
"Notebook synopsis:\n",
"\n",
"1. Creating an Experiment in an existing Workspace\n",
"2. Configuration and remote run of AutoML for a time-series model exploring Regression learners, Arima, Prophet and DNNs\n",
"4. Evaluating the fitted model using a rolling test "
@@ -114,7 +113,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -219,6 +218,8 @@
"\n",
"**Time series identifier columns** are identified by values of the columns listed `time_series_id_column_names`, for example \"store\" and \"item\" if your data has multiple time series of sales, one series for each combination of store and item sold.\n",
"\n",
"**Forecast frequency (freq)** This optional parameter represents the period with which the forecast is desired, for example, daily, weekly, yearly, etc. Use this parameter for the correction of time series containing irregular data points or for padding of short time series. The frequency needs to be a pandas offset alias. Please refer to [pandas documentation](https://pandas.pydata.org/pandas-docs/stable/user_guide/timeseries.html#dateoffset-objects) for more information.\n",
"\n",
"This dataset has only one time series. Please see the [orange juice notebook](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/automated-machine-learning/forecasting-orange-juice-sales) for an example of a multi-time series dataset."
]
},
@@ -350,9 +351,7 @@
"|**iteration_timeout_minutes**|Time limit in minutes for each iteration.|\n",
"|**training_data**|Input dataset, containing both features and label column.|\n",
"|**label_column_name**|The name of the label column.|\n",
"|**enable_dnn**|Enable Forecasting DNNs|\n",
"\n",
"This step requires an Enterprise workspace to gain access to this feature. To learn more about creating an Enterprise workspace or upgrading to an Enterprise workspace from the Azure portal, please visit our [Workspace page.](https://docs.microsoft.com/azure/machine-learning/service/concept-workspace#upgrade)."
"|**enable_dnn**|Enable Forecasting DNNs|\n"
]
},
{
@@ -650,7 +649,7 @@
"metadata": {
"authors": [
{
"name": "omkarm"
"name": "jialiu"
}
],
"hide_code_all_hidden": false,

View File

@@ -3,11 +3,11 @@ from azureml.core import Environment
from azureml.core.conda_dependencies import CondaDependencies
from azureml.train.estimator import Estimator
from azureml.core.run import Run
from azureml.automl.core.shared import constants
def split_fraction_by_grain(df, fraction, time_column_name,
grain_column_names=None):
if not grain_column_names:
df['tmp_grain_column'] = 'grain'
grain_column_names = ['tmp_grain_column']
@@ -59,7 +59,9 @@ def get_result_df(remote_run):
'primary_metric', 'Score'])
goal_minimize = False
for run in children:
if('run_algorithm' in run.properties and 'score' in run.properties):
if run.get_status().lower() == constants.RunState.COMPLETE_RUN \
and 'run_algorithm' in run.properties and 'score' in run.properties:
# We only count in the completed child runs.
summary_df[run.id] = [run.id, run.properties['run_algorithm'],
run.properties['primary_metric'],
float(run.properties['score'])]
@@ -118,7 +120,6 @@ def run_multiple_inferences(summary_df, train_experiment, test_experiment,
compute_target, script_folder, test_dataset,
lookback_dataset, max_horizon, target_column_name,
time_column_name, freq):
for run_name, run_summary in summary_df.iterrows():
print(run_name)
print(run_summary)

View File

@@ -1,4 +1,5 @@
import argparse
import os
import numpy as np
import pandas as pd
@@ -10,6 +11,13 @@ from sklearn.metrics import mean_absolute_error, mean_squared_error
from azureml.automl.runtime.shared.score import scoring, constants
from azureml.core import Run
try:
import torch
_torch_present = True
except ImportError:
_torch_present = False
def align_outputs(y_predicted, X_trans, X_test, y_test,
predicted_column_name='predicted',
@@ -83,8 +91,7 @@ def do_rolling_forecast_with_lookback(fitted_model, X_test, y_test,
if origin_time != X[time_column_name].min():
# Set the context by including actuals up-to the origin time
test_context_expand_wind = (X[time_column_name] < origin_time)
context_expand_wind = (
X_test_expand[time_column_name] < origin_time)
context_expand_wind = (X_test_expand[time_column_name] < origin_time)
y_query_expand[context_expand_wind] = y[test_context_expand_wind]
# Print some debug info
@@ -115,8 +122,7 @@ def do_rolling_forecast_with_lookback(fitted_model, X_test, y_test,
# Align forecast with test set for dates within
# the current rolling window
trans_tindex = X_trans.index.get_level_values(time_column_name)
trans_roll_wind = (trans_tindex >= origin_time) & (
trans_tindex < horizon_time)
trans_roll_wind = (trans_tindex >= origin_time) & (trans_tindex < horizon_time)
test_roll_wind = expand_wind & (X[time_column_name] >= origin_time)
df_list.append(align_outputs(
y_fcst[trans_roll_wind], X_trans[trans_roll_wind],
@@ -155,8 +161,7 @@ def do_rolling_forecast(fitted_model, X_test, y_test, max_horizon, freq='D'):
if origin_time != X_test[time_column_name].min():
# Set the context by including actuals up-to the origin time
test_context_expand_wind = (X_test[time_column_name] < origin_time)
context_expand_wind = (
X_test_expand[time_column_name] < origin_time)
context_expand_wind = (X_test_expand[time_column_name] < origin_time)
y_query_expand[context_expand_wind] = y_test[
test_context_expand_wind]
@@ -186,10 +191,8 @@ def do_rolling_forecast(fitted_model, X_test, y_test, max_horizon, freq='D'):
# Align forecast with test set for dates within the
# current rolling window
trans_tindex = X_trans.index.get_level_values(time_column_name)
trans_roll_wind = (trans_tindex >= origin_time) & (
trans_tindex < horizon_time)
test_roll_wind = expand_wind & (
X_test[time_column_name] >= origin_time)
trans_roll_wind = (trans_tindex >= origin_time) & (trans_tindex < horizon_time)
test_roll_wind = expand_wind & (X_test[time_column_name] >= origin_time)
df_list.append(align_outputs(y_fcst[trans_roll_wind],
X_trans[trans_roll_wind],
X_test[test_roll_wind],
@@ -221,6 +224,10 @@ def MAPE(actual, pred):
return np.mean(APE(actual_safe, pred_safe))
def map_location_cuda(storage, loc):
return storage.cuda()
parser = argparse.ArgumentParser()
parser.add_argument(
'--max_horizon', type=int, dest='max_horizon',
@@ -238,7 +245,6 @@ parser.add_argument(
'--model_path', type=str, dest='model_path',
default='model.pkl', help='Filename of model to be loaded')
args = parser.parse_args()
max_horizon = args.max_horizon
target_column_name = args.target_column_name
@@ -246,7 +252,6 @@ time_column_name = args.time_column_name
freq = args.freq
model_path = args.model_path
print('args passed are: ')
print(max_horizon)
print(target_column_name)
@@ -274,9 +279,20 @@ X_lookback_df = lookback_dataset.drop_columns(columns=[target_column_name])
y_lookback_df = lookback_dataset.with_timestamp_columns(
None).keep_columns(columns=[target_column_name])
_, ext = os.path.splitext(model_path)
if ext == '.pt':
# Load the fc-tcn torch model.
assert _torch_present
if torch.cuda.is_available():
map_location = map_location_cuda
else:
map_location = 'cpu'
with open(model_path, 'rb') as fh:
fitted_model = torch.load(fh, map_location=map_location)
else:
# Load the sklearn pipeline.
fitted_model = joblib.load(model_path)
if hasattr(fitted_model, 'get_lookback'):
lookback = fitted_model.get_lookback()
df_all = do_rolling_forecast_with_lookback(

View File

@@ -87,7 +87,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -131,7 +131,7 @@
"You will need to create a [compute target](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute) for your AutoML run. In this tutorial, you create AmlCompute as your training compute resource.\n",
"#### Creation of AmlCompute takes approximately 5 minutes. \n",
"If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read this article on the default limits and how to request more quota."
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."
]
},
{
@@ -205,6 +205,10 @@
"outputs": [],
"source": [
"dataset = Dataset.Tabular.from_delimited_files(path = [(datastore, 'dataset/bike-no.csv')]).with_timestamp_columns(fine_grain_timestamp=time_column_name) \n",
"\n",
"# Drop the columns 'casual' and 'registered' as these columns are a breakdown of the total and therefore a leak.\n",
"dataset = dataset.drop_columns(columns=['casual', 'registered'])\n",
"\n",
"dataset.take(5).to_pandas_dataframe().reset_index(drop=True)"
]
},
@@ -251,7 +255,7 @@
"|**forecast_horizon**|The forecast horizon is how many periods forward you would like to forecast. This integer horizon is in units of the timeseries frequency (e.g. daily, weekly).|\n",
"|**country_or_region_for_holidays**|The country/region used to generate holiday features. These should be ISO 3166 two-letter country/region codes (i.e. 'US', 'GB').|\n",
"|**target_lags**|The target_lags specifies how far back we will construct the lags of the target variable.|\n",
"|**drop_column_names**|Name(s) of columns to drop prior to modeling|"
"|**freq**|Forecast frequency. This optional parameter represents the period with which the forecast is desired, for example, daily, weekly, yearly, etc. Use this parameter for the correction of time series containing irregular data points or for padding of short time series. The frequency needs to be a pandas offset alias. Please refer to [pandas documentation](https://pandas.pydata.org/pandas-docs/stable/user_guide/timeseries.html#dateoffset-objects) for more information."
]
},
{
@@ -314,8 +318,7 @@
" time_column_name=time_column_name,\n",
" forecast_horizon=forecast_horizon,\n",
" country_or_region_for_holidays='US', # set country_or_region will trigger holiday featurizer\n",
" target_lags='auto', # use heuristic based lag setting \n",
" drop_column_names=['casual', 'registered'] # these columns are a breakdown of the total and therefore a leak\n",
" target_lags='auto' # use heuristic based lag setting \n",
")\n",
"\n",
"automl_config = AutoMLConfig(task='forecasting', \n",
@@ -548,6 +551,9 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"For more details on what metrics are included and how they are calculated, please refer to [supported metrics](https://docs.microsoft.com/en-us/azure/machine-learning/how-to-understand-automated-ml#regressionforecasting-metrics). You could also calculate residuals, like described [here](https://docs.microsoft.com/en-us/azure/machine-learning/how-to-understand-automated-ml#residuals).\n",
"\n",
"\n",
"Since we did a rolling evaluation on the test set, we can analyze the predictions by their forecast horizon relative to the rolling origin. The model was initially trained at a forecast horizon of 14, so each prediction from the model is associated with a horizon value from 1 to 14. The horizon values are in a column named, \"horizon_origin,\" in the prediction set. For example, we can calculate some of the error metrics grouped by the horizon:"
]
},
@@ -594,7 +600,7 @@
"metadata": {
"authors": [
{
"name": "erwright"
"name": "jialiu"
}
],
"category": "tutorial",

View File

@@ -1,22 +1,24 @@
import argparse
import azureml.train.automl
from azureml.core import Run
from azureml.core import Dataset, Run
from sklearn.externals import joblib
parser = argparse.ArgumentParser()
parser.add_argument(
'--target_column_name', type=str, dest='target_column_name',
help='Target Column Name')
parser.add_argument(
'--test_dataset', type=str, dest='test_dataset',
help='Test Dataset')
args = parser.parse_args()
target_column_name = args.target_column_name
test_dataset_id = args.test_dataset
run = Run.get_context()
# get input dataset by name
test_dataset = run.input_datasets['test_data']
ws = run.experiment.workspace
df = test_dataset.to_pandas_dataframe().reset_index(drop=True)
# get the input dataset by id
test_dataset = Dataset.get_by_id(ws, id=test_dataset_id)
X_test_df = test_dataset.drop_columns(columns=[target_column_name]).to_pandas_dataframe().reset_index(drop=True)
y_test_df = test_dataset.with_timestamp_columns(None).keep_columns(columns=[target_column_name]).to_pandas_dataframe()

View File

@@ -1,37 +1,32 @@
from azureml.core import Environment
from azureml.core.conda_dependencies import CondaDependencies
from azureml.train.estimator import Estimator
from azureml.core.run import Run
from azureml.core import ScriptRunConfig
def run_rolling_forecast(test_experiment, compute_target, train_run, test_dataset,
target_column_name, inference_folder='./forecast'):
condafile = inference_folder + '/condafile.yml'
def run_rolling_forecast(test_experiment, compute_target, train_run,
test_dataset, target_column_name,
inference_folder='./forecast'):
train_run.download_file('outputs/model.pkl',
inference_folder + '/model.pkl')
train_run.download_file('outputs/conda_env_v_1_0_0.yml', condafile)
inference_env = Environment("myenv")
inference_env.docker.enabled = True
inference_env.python.conda_dependencies = CondaDependencies(
conda_dependencies_file_path=condafile)
inference_env = train_run.get_environment()
est = Estimator(source_directory=inference_folder,
entry_script='forecasting_script.py',
script_params={
'--target_column_name': target_column_name
},
inputs=[test_dataset.as_named_input('test_data')],
config = ScriptRunConfig(source_directory=inference_folder,
script='forecasting_script.py',
arguments=['--target_column_name',
target_column_name,
'--test_dataset',
test_dataset.as_named_input(test_dataset.name)],
compute_target=compute_target,
environment_definition=inference_env)
environment=inference_env)
run = test_experiment.submit(est,
tags={
'training_run_id': train_run.id,
'run_algorithm': train_run.properties['run_algorithm'],
'valid_score': train_run.properties['score'],
'primary_metric': train_run.properties['primary_metric']
})
run = test_experiment.submit(config,
tags={'training_run_id':
train_run.id,
'run_algorithm':
train_run.properties['run_algorithm'],
'valid_score':
train_run.properties['score'],
'primary_metric':
train_run.properties['primary_metric']})
run.log("run_algorithm", run.tags['run_algorithm'])
return run

View File

@@ -97,7 +97,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -301,7 +301,8 @@
"|Property|Description|\n",
"|-|-|\n",
"|**time_column_name**|The name of your time column.|\n",
"|**forecast_horizon**|The forecast horizon is how many periods forward you would like to forecast. This integer horizon is in units of the timeseries frequency (e.g. daily, weekly).|"
"|**forecast_horizon**|The forecast horizon is how many periods forward you would like to forecast. This integer horizon is in units of the timeseries frequency (e.g. daily, weekly).|\n",
"|**freq**|Forecast frequency. This optional parameter represents the period with which the forecast is desired, for example, daily, weekly, yearly, etc. Use this parameter for the correction of time series containing irregular data points or for padding of short time series. The frequency needs to be a pandas offset alias. Please refer to [pandas documentation](https://pandas.pydata.org/pandas-docs/stable/user_guide/timeseries.html#dateoffset-objects) for more information."
]
},
{
@@ -497,7 +498,7 @@
"metadata": {},
"source": [
"### Evaluate\n",
"To evaluate the accuracy of the forecast, we'll compare against the actual sales quantities for some select metrics, included the mean absolute percentage error (MAPE).\n",
"To evaluate the accuracy of the forecast, we'll compare against the actual sales quantities for some select metrics, included the mean absolute percentage error (MAPE). For more metrics that can be used for evaluation after training, please see [supported metrics](https://docs.microsoft.com/en-us/azure/machine-learning/how-to-understand-automated-ml#regressionforecasting-metrics), and [how to calculate residuals](https://docs.microsoft.com/en-us/azure/machine-learning/how-to-understand-automated-ml#residuals).\n",
"\n",
"It is a good practice to always align the output explicitly to the input, as the count and order of the rows may have changed during transformations that span multiple rows."
]
@@ -703,7 +704,7 @@
"metadata": {
"authors": [
{
"name": "erwright"
"name": "jialiu"
}
],
"categories": [

View File

@@ -24,7 +24,7 @@
"metadata": {},
"source": [
"## Introduction\n",
"This notebook demonstrates the full interface to the `forecast()` function. \n",
"This notebook demonstrates the full interface of the `forecast()` function. \n",
"\n",
"The best known and most frequent usage of `forecast` enables forecasting on test sets that immediately follows training data. \n",
"\n",
@@ -94,7 +94,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -302,7 +302,8 @@
"* Set early termination to True, so the iterations through the models will stop when no improvements in accuracy score will be made.\n",
"* Set limitations on the length of experiment run to 15 minutes.\n",
"* Finally, we set the task to be forecasting.\n",
"* We apply the lag lead operator to the target value i.e. we use the previous values as a predictor for the future ones."
"* We apply the lag lead operator to the target value i.e. we use the previous values as a predictor for the future ones.\n",
"* [Optional] Forecast frequency parameter (freq) represents the period with which the forecast is desired, for example, daily, weekly, yearly, etc. Use this parameter for the correction of time series containing irregular data points or for padding of short time series. The frequency needs to be a pandas offset alias. Please refer to [pandas documentation](https://pandas.pydata.org/pandas-docs/stable/user_guide/timeseries.html#dateoffset-objects) for more information."
]
},
{
@@ -809,7 +810,7 @@
"metadata": {
"authors": [
{
"name": "erwright"
"name": "jialiu"
}
],
"category": "tutorial",

View File

@@ -82,7 +82,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -126,7 +126,7 @@
"You will need to create a [compute target](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute) for your AutoML run. In this tutorial, you create AmlCompute as your training compute resource.\n",
"#### Creation of AmlCompute takes approximately 5 minutes. \n",
"If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read this article on the default limits and how to request more quota."
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."
]
},
{
@@ -169,6 +169,10 @@
"source": [
"time_column_name = 'WeekStarting'\n",
"data = pd.read_csv(\"dominicks_OJ.csv\", parse_dates=[time_column_name])\n",
"\n",
"# Drop the columns 'logQuantity' as it is a leaky feature.\n",
"data.drop('logQuantity', axis=1, inplace=True)\n",
"\n",
"data.head()"
]
},
@@ -325,12 +329,11 @@
"source": [
"## Customization\n",
"\n",
"The featurization customization in forecasting is an advanced feature in AutoML which allows our customers to change the default forecasting featurization behaviors and column types through `FeaturizationConfig`. The supported scenarios include,\n",
"The featurization customization in forecasting is an advanced feature in AutoML which allows our customers to change the default forecasting featurization behaviors and column types through `FeaturizationConfig`. The supported scenarios include:\n",
"\n",
"1. Column purposes update: Override feature type for the specified column. Currently supports DateTime, Categorical and Numeric. This customization can be used in the scenario that the type of the column cannot correctly reflect its purpose. Some numerical columns, for instance, can be treated as Categorical columns which need to be converted to categorical while some can be treated as epoch timestamp which need to be converted to datetime. To tell our SDK to correctly preprocess these columns, a configuration need to be add with the columns and their desired types.\n",
"2. Transformer parameters update: Currently supports parameter change for Imputer only. User can customize imputation methods. The supported imputing methods for target column are constant and ffill (forward fill). The supported imputing methods for feature columns are mean, median, most frequent, constant and ffill (forward fill). This customization can be used for the scenario that our customers know which imputation methods fit best to the input data. For instance, some datasets use NaN to represent 0 which the correct behavior should impute all the missing value with 0. To achieve this behavior, these columns need to be configured as constant imputation with `fill_value` 0.\n",
"3. Drop columns: Columns to drop from being featurized. These usually are the columns which are leaky or the columns contain no useful data.\n",
"\n",
"This step requires an Enterprise workspace to gain access to this feature. To learn more about creating an Enterprise workspace or upgrading to an Enterprise workspace from the Azure portal, please visit our [Workspace page.](https://docs.microsoft.com/azure/machine-learning/service/concept-workspace#upgrade)"
"3. Drop columns: Columns to drop from being featurized. These usually are the columns which are leaky or the columns contain no useful data."
]
},
{
@@ -344,7 +347,6 @@
"outputs": [],
"source": [
"featurization_config = FeaturizationConfig()\n",
"featurization_config.drop_columns = ['logQuantity'] # 'logQuantity' is a leaky feature, so we remove it.\n",
"# Force the CPWVOL5 feature to be numeric type.\n",
"featurization_config.add_column_purpose('CPWVOL5', 'Numeric')\n",
"# Fill missing values in the target column, Quantity, with zeros.\n",
@@ -367,7 +369,8 @@
"|-|-|\n",
"|**time_column_name**|The name of your time column.|\n",
"|**forecast_horizon**|The forecast horizon is how many periods forward you would like to forecast. This integer horizon is in units of the timeseries frequency (e.g. daily, weekly).|\n",
"|**time_series_id_column_names**|The column names used to uniquely identify the time series in data that has multiple rows with the same timestamp. If the time series identifiers are not defined, the data set is assumed to be one time series.|"
"|**time_series_id_column_names**|The column names used to uniquely identify the time series in data that has multiple rows with the same timestamp. If the time series identifiers are not defined, the data set is assumed to be one time series.|\n",
"|**freq**|Forecast frequency. This optional parameter represents the period with which the forecast is desired, for example, daily, weekly, yearly, etc. Use this parameter for the correction of time series containing irregular data points or for padding of short time series. The frequency needs to be a pandas offset alias. Please refer to [pandas documentation](https://pandas.pydata.org/pandas-docs/stable/user_guide/timeseries.html#dateoffset-objects) for more information."
]
},
{
@@ -383,7 +386,7 @@
"The forecast horizon is given in units of the time-series frequency; for instance, the OJ series frequency is weekly, so a horizon of 20 means that a trained model will estimate sales up to 20 weeks beyond the latest date in the training data for each series. In this example, we set the forecast horizon to the number of samples per series in the test set (n_test_periods). Generally, the value of this parameter will be dictated by business needs. For example, a demand planning application that estimates the next month of sales should set the horizon according to suitable planning time-scales. Please see the [energy_demand notebook](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/automated-machine-learning/forecasting-energy-demand) for more discussion of forecast horizon.\n",
"\n",
"We note here that AutoML can sweep over two types of time-series models:\n",
"* Models that are trained for each series such as ARIMA and Facebook's Prophet. Note that these models are only available for [Enterprise Edition Workspaces](https://docs.microsoft.com/en-us/azure/machine-learning/how-to-manage-workspace#upgrade).\n",
"* Models that are trained for each series such as ARIMA and Facebook's Prophet.\n",
"* Models trained across multiple time-series using a regression approach.\n",
"\n",
"In the first case, AutoML loops over all time-series in your dataset and trains one model (e.g. AutoArima or Prophet, as the case may be) for each series. This can result in long runtimes to train these models if there are a lot of series in the data. One way to mitigate this problem is to fit models for different series in parallel if you have multiple compute cores available. To enable this behavior, set the `max_cores_per_iteration` parameter in your AutoMLConfig as shown in the example in the next cell. \n",
@@ -572,7 +575,7 @@
"source": [
"# Evaluate\n",
"\n",
"To evaluate the accuracy of the forecast, we'll compare against the actual sales quantities for some select metrics, included the mean absolute percentage error (MAPE). \n",
"To evaluate the accuracy of the forecast, we'll compare against the actual sales quantities for some select metrics, included the mean absolute percentage error (MAPE). For more metrics that can be used for evaluation after training, please see [supported metrics](https://docs.microsoft.com/en-us/azure/machine-learning/how-to-understand-automated-ml#regressionforecasting-metrics), and [how to calculate residuals](https://docs.microsoft.com/en-us/azure/machine-learning/how-to-understand-automated-ml#residuals).\n",
"\n",
"We'll add predictions and actuals into a single dataframe for convenience in calculating the metrics."
]
@@ -764,7 +767,7 @@
"metadata": {
"authors": [
{
"name": "erwright"
"name": "jialiu"
}
],
"category": "tutorial",

View File

@@ -80,7 +80,7 @@
"from azureml.core.workspace import Workspace\n",
"from azureml.core.dataset import Dataset\n",
"from azureml.train.automl import AutoMLConfig\n",
"from azureml.interpret._internal.explanation_client import ExplanationClient"
"from azureml.interpret import ExplanationClient"
]
},
{
@@ -96,7 +96,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -359,7 +359,7 @@
"Besides retrieving an existing model explanation for an AutoML model, you can also explain your AutoML model with different test data. The following steps will allow you to compute and visualize engineered feature importance based on your test data.\n",
"\n",
"### Run the explanation\n",
"#### Download engineered feature importance from artifact store\n",
"#### Download the engineered feature importance from artifact store\n",
"You can use ExplanationClient to download the engineered feature explanations from the artifact store of the best_run. You can also use azure portal url to view the dash board visualization of the feature importance values of the engineered features."
]
},
@@ -375,6 +375,25 @@
"print(\"You can visualize the engineered explanations under the 'Explanations (preview)' tab in the AutoML run at:-\\n\" + best_run.get_portal_url())"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Download the raw feature importance from artifact store\n",
"You can use ExplanationClient to download the raw feature explanations from the artifact store of the best_run. You can also use azure portal url to view the dash board visualization of the feature importance values of the raw features."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"raw_explanations = client.download_model_explanation(raw=True)\n",
"print(raw_explanations.get_feature_importance_dict())\n",
"print(\"You can visualize the raw explanations under the 'Explanations (preview)' tab in the AutoML run at:-\\n\" + best_run.get_portal_url())"
]
},
{
"cell_type": "markdown",
"metadata": {},
@@ -474,6 +493,29 @@
"print(\"You can visualize the engineered explanations under the 'Explanations (preview)' tab in the AutoML run at:-\\n\" + automl_run.get_portal_url())"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Use Mimic Explainer for computing and visualizing raw feature importance\n",
"The explain() method in MimicWrapper can be called with the transformed test samples to get the feature importance for the original features in your data. You can also use azure portal url to view the dash board visualization of the feature importance values of the original/raw features."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Compute the raw explanations\n",
"raw_explanations = explainer.explain(['local', 'global'], get_raw=True,\n",
" raw_feature_names=automl_explainer_setup_obj.raw_feature_names,\n",
" eval_dataset=automl_explainer_setup_obj.X_test_transform,\n",
" raw_eval_dataset=automl_explainer_setup_obj.X_test_raw)\n",
"print(raw_explanations.get_feature_importance_dict())\n",
"print(\"You can visualize the raw explanations under the 'Explanations (preview)' tab in the AutoML run at:-\\n\" + automl_run.get_portal_url())"
]
},
{
"cell_type": "markdown",
"metadata": {},
@@ -590,9 +632,12 @@
" X_test=data, task='classification')\n",
" # Retrieve model explanations for engineered explanations\n",
" engineered_local_importance_values = scoring_explainer.explain(automl_explainer_setup_obj.X_test_transform)\n",
" # Retrieve model explanations for raw explanations\n",
" raw_local_importance_values = scoring_explainer.explain(automl_explainer_setup_obj.X_test_transform, get_raw=True)\n",
" # You can return any data type as long as it is JSON-serializable\n",
" return {'predictions': predictions.tolist(),\n",
" 'engineered_local_importance_values': engineered_local_importance_values}\n"
" 'engineered_local_importance_values': engineered_local_importance_values,\n",
" 'raw_local_importance_values': raw_local_importance_values}\n"
]
},
{
@@ -725,7 +770,9 @@
"# Print the predicted value\n",
"print('predictions:\\n{}\\n'.format(output['predictions']))\n",
"# Print the engineered feature importances for the predicted value\n",
"print('engineered_local_importance_values:\\n{}\\n'.format(output['engineered_local_importance_values']))"
"print('engineered_local_importance_values:\\n{}\\n'.format(output['engineered_local_importance_values']))\n",
"# Print the raw feature importances for the predicted value\n",
"print('raw_local_importance_values:\\n{}\\n'.format(output['raw_local_importance_values']))\n"
]
},
{
@@ -773,7 +820,7 @@
"metadata": {
"authors": [
{
"name": "anumamah"
"name": "ratanase"
}
],
"category": "tutorial",

View File

@@ -42,8 +42,6 @@
"\n",
"If you are using an Azure Machine Learning Compute Instance, you are all set. Otherwise, go through the [configuration](../../../configuration.ipynb) notebook first if you haven't already to establish your connection to the AzureML Workspace. \n",
"\n",
"An Enterprise workspace is required for this notebook. To learn more about creating an Enterprise workspace or upgrading to an Enterprise workspace from the Azure portal, please visit our [Workspace page.](https://docs.microsoft.com/azure/machine-learning/service/concept-workspace#upgrade) \n",
"\n",
"In this notebook you will learn how to:\n",
"1. Create an `Experiment` in an existing `Workspace`.\n",
"2. Instantiating AutoMLConfig with FeaturizationConfig for customization\n",
@@ -98,7 +96,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -223,9 +221,8 @@
"source": [
"## Customization\n",
"\n",
"This step requires an Enterprise workspace to gain access to this feature. To learn more about creating an Enterprise workspace or upgrading to an Enterprise workspace from the Azure portal, please visit our [Workspace page.](https://docs.microsoft.com/azure/machine-learning/service/concept-workspace#upgrade). \n",
"\n",
"Supported customization includes:\n",
"\n",
"1. Column purpose update: Override feature type for the specified column.\n",
"2. Transformer parameter update: Update parameters for the specified transformer. Currently supports Imputer and HashOneHotEncoder.\n",
"3. Drop columns: Columns to drop from being featurized.\n",
@@ -447,7 +444,6 @@
"metadata": {},
"source": [
"## Explanations\n",
"This step requires an Enterprise workspace to gain access to this feature. To learn more about creating an Enterprise workspace or upgrading to an Enterprise workspace from the Azure portal, please visit our [Workspace page.](https://docs.microsoft.com/azure/machine-learning/service/concept-workspace#upgrade). \n",
"This section will walk you through the workflow to compute model explanations for an AutoML model on your remote compute.\n",
"\n",
"### Retrieve any AutoML Model for explanations\n",
@@ -625,7 +621,7 @@
"metadata": {},
"outputs": [],
"source": [
"from azureml.interpret._internal.explanation_client import ExplanationClient\n",
"from azureml.interpret import ExplanationClient\n",
"client = ExplanationClient.from_run(automl_run)\n",
"engineered_explanations = client.download_model_explanation(raw=False, comment='engineered explanations')\n",
"print(engineered_explanations.get_feature_importance_dict())\n",
@@ -655,7 +651,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"## Operationailze\n",
"## Operationalize\n",
"In this section we will show how you can operationalize an AutoML model and the explainer which was used to compute the explanations in the previous section.\n",
"\n",
"### Register the AutoML model and the scoring explainer\n",
@@ -905,7 +901,7 @@
"metadata": {
"authors": [
{
"name": "anumamah"
"name": "anshirga"
}
],
"categories": [

View File

@@ -4,7 +4,7 @@ import os
import joblib
from interpret.ext.glassbox import LGBMExplainableModel
from automl.client.core.common.constants import MODEL_PATH
from azureml.automl.core.shared.constants import MODEL_PATH
from azureml.core.experiment import Experiment
from azureml.core.dataset import Dataset
from azureml.core.run import Run
@@ -66,7 +66,8 @@ engineered_explanations = explainer.explain(['local', 'global'], tag='engineered
# Compute the raw explanations
raw_explanations = explainer.explain(['local', 'global'], get_raw=True, tag='raw explanations',
raw_feature_names=automl_explainer_setup_obj.raw_feature_names,
eval_dataset=automl_explainer_setup_obj.X_test_transform)
eval_dataset=automl_explainer_setup_obj.X_test_transform,
raw_eval_dataset=automl_explainer_setup_obj.X_test_raw)
print("Engineered and raw explanations computed successfully")

View File

@@ -92,7 +92,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.14.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.24.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -375,18 +375,12 @@
"metadata": {},
"outputs": [],
"source": [
"# preview the first 3 rows of the dataset\n",
"\n",
"test_data = test_data.to_pandas_dataframe()\n",
"y_test = test_data['ERP'].fillna(0)\n",
"test_data = test_data.drop('ERP', 1)\n",
"test_data = test_data.fillna(0)\n",
"y_test = test_data.keep_columns('ERP').to_pandas_dataframe()\n",
"test_data = test_data.drop_columns('ERP').to_pandas_dataframe()\n",
"\n",
"\n",
"train_data = train_data.to_pandas_dataframe()\n",
"y_train = train_data['ERP'].fillna(0)\n",
"train_data = train_data.drop('ERP', 1)\n",
"train_data = train_data.fillna(0)\n"
"y_train = train_data.keep_columns('ERP').to_pandas_dataframe()\n",
"train_data = train_data.drop_columns('ERP').to_pandas_dataframe()\n"
]
},
{
@@ -396,10 +390,10 @@
"outputs": [],
"source": [
"y_pred_train = fitted_model.predict(train_data)\n",
"y_residual_train = y_train - y_pred_train\n",
"y_residual_train = y_train.values - y_pred_train\n",
"\n",
"y_pred_test = fitted_model.predict(test_data)\n",
"y_residual_test = y_test - y_pred_test"
"y_residual_test = y_test.values - y_pred_test"
]
},
{
@@ -462,7 +456,7 @@
"metadata": {
"authors": [
{
"name": "rakellam"
"name": "ratanase"
}
],
"categories": [

View File

@@ -1,33 +0,0 @@
Azure Databricks is a managed Spark offering on Azure and customers already use it for advanced analytics. It provides a collaborative Notebook based environment with CPU or GPU based compute cluster.
In this section, you will find sample notebooks on how to use Azure Machine Learning SDK with Azure Databricks. You can train a model using Spark MLlib and then deploy the model to ACI/AKS from within Azure Databricks. You can also use Automated ML capability (**public preview**) of Azure ML SDK with Azure Databricks.
- Customers who use Azure Databricks for advanced analytics can now use the same cluster to run experiments with or without automated machine learning.
- You can keep the data within the same cluster.
- You can leverage the local worker nodes with autoscale and auto termination capabilities.
- You can use multiple cores of your Azure Databricks cluster to perform simultenous training.
- You can further tune the model generated by automated machine learning if you chose to.
- Every run (including the best run) is available as a pipeline, which you can tune further if needed.
- The model trained using Azure Databricks can be registered in Azure ML SDK workspace and then deployed to Azure managed compute (ACI or AKS) using the Azure Machine learning SDK.
Please follow our [Azure doc](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-configure-environment#azure-databricks) to install the sdk in your Azure Databricks cluster before trying any of the sample notebooks.
**Single file** -
The following archive contains all the sample notebooks. You can the run notebooks after importing [DBC](Databricks_AMLSDK_1-4_6.dbc) in your Databricks workspace instead of downloading individually.
Notebooks 1-4 have to be run sequentially & are related to Income prediction experiment based on this [dataset](https://archive.ics.uci.edu/ml/datasets/adult) and demonstrate how to data prep, train and operationalize a Spark ML model with Azure ML Python SDK from within Azure Databricks.
Notebook 6 is an Automated ML sample notebook for Classification.
Learn more about [how to use Azure Databricks as a development environment](https://docs.microsoft.com/azure/machine-learning/service/how-to-configure-environment#azure-databricks) for Azure Machine Learning service.
**Databricks as a Compute Target from AML Pipelines**
You can use Azure Databricks as a compute target from [Azure Machine Learning Pipelines](https://docs.microsoft.com/en-us/azure/machine-learning/service/concept-ml-pipelines). Take a look at this notebook for details: [aml-pipelines-use-databricks-as-compute-target.ipynb](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/azure-databricks/databricks-as-remote-compute-target/aml-pipelines-use-databricks-as-compute-target.ipynb).
For more on SDK concepts, please refer to [notebooks](https://github.com/Azure/MachineLearningNotebooks).
**Please let us know your feedback.**
![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/azure-databricks/README.png)

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@@ -1,373 +0,0 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Azure ML & Azure Databricks notebooks by Parashar Shah.\n",
"\n",
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#Model Building"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"import pprint\n",
"import numpy as np\n",
"\n",
"from pyspark.ml import Pipeline, PipelineModel\n",
"from pyspark.ml.feature import OneHotEncoder, StringIndexer, VectorAssembler\n",
"from pyspark.ml.classification import LogisticRegression\n",
"from pyspark.ml.evaluation import BinaryClassificationEvaluator\n",
"from pyspark.ml.tuning import CrossValidator, ParamGridBuilder"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import azureml.core\n",
"\n",
"# Check core SDK version number\n",
"print(\"SDK version:\", azureml.core.VERSION)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Set auth to be used by workspace related APIs.\n",
"# For automation or CI/CD ServicePrincipalAuthentication can be used.\n",
"# https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.authentication.serviceprincipalauthentication?view=azure-ml-py\n",
"auth = None"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# import the Workspace class and check the azureml SDK version\n",
"from azureml.core import Workspace\n",
"\n",
"ws = Workspace.from_config(auth = auth)\n",
"print('Workspace name: ' + ws.name, \n",
" 'Azure region: ' + ws.location, \n",
" 'Subscription id: ' + ws.subscription_id, \n",
" 'Resource group: ' + ws.resource_group, sep = '\\n')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#get the train and test datasets\n",
"train_data_path = \"AdultCensusIncomeTrain\"\n",
"test_data_path = \"AdultCensusIncomeTest\"\n",
"\n",
"train = spark.read.parquet(train_data_path)\n",
"test = spark.read.parquet(test_data_path)\n",
"\n",
"print(\"train: ({}, {})\".format(train.count(), len(train.columns)))\n",
"print(\"test: ({}, {})\".format(test.count(), len(test.columns)))\n",
"\n",
"train.printSchema()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#Define Model"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"label = \"income\"\n",
"dtypes = dict(train.dtypes)\n",
"dtypes.pop(label)\n",
"\n",
"si_xvars = []\n",
"ohe_xvars = []\n",
"featureCols = []\n",
"for idx,key in enumerate(dtypes):\n",
" if dtypes[key] == \"string\":\n",
" featureCol = \"-\".join([key, \"encoded\"])\n",
" featureCols.append(featureCol)\n",
" \n",
" tmpCol = \"-\".join([key, \"tmp\"])\n",
" # string-index and one-hot encode the string column\n",
" #https://spark.apache.org/docs/2.3.0/api/java/org/apache/spark/ml/feature/StringIndexer.html\n",
" #handleInvalid: Param for how to handle invalid data (unseen labels or NULL values). \n",
" #Options are 'skip' (filter out rows with invalid data), 'error' (throw an error), \n",
" #or 'keep' (put invalid data in a special additional bucket, at index numLabels). Default: \"error\"\n",
" si_xvars.append(StringIndexer(inputCol=key, outputCol=tmpCol, handleInvalid=\"skip\"))\n",
" ohe_xvars.append(OneHotEncoder(inputCol=tmpCol, outputCol=featureCol))\n",
" else:\n",
" featureCols.append(key)\n",
"\n",
"# string-index the label column into a column named \"label\"\n",
"si_label = StringIndexer(inputCol=label, outputCol='label')\n",
"\n",
"# assemble the encoded feature columns in to a column named \"features\"\n",
"assembler = VectorAssembler(inputCols=featureCols, outputCol=\"features\")"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.run import Run\n",
"from azureml.core.experiment import Experiment\n",
"import numpy as np\n",
"import os\n",
"import shutil\n",
"\n",
"model_name = \"AdultCensus_runHistory.mml\"\n",
"model_dbfs = os.path.join(\"/dbfs\", model_name)\n",
"run_history_name = 'spark-ml-notebook'\n",
"\n",
"# start a training run by defining an experiment\n",
"myexperiment = Experiment(ws, \"Ignite_AI_Talk\")\n",
"root_run = myexperiment.start_logging()\n",
"\n",
"# Regularization Rates - \n",
"regs = [0.0001, 0.001, 0.01, 0.1]\n",
" \n",
"# try a bunch of regularization rate in a Logistic Regression model\n",
"for reg in regs:\n",
" print(\"Regularization rate: {}\".format(reg))\n",
" # create a bunch of child runs\n",
" with root_run.child_run(\"reg-\" + str(reg)) as run:\n",
" # create a new Logistic Regression model.\n",
" lr = LogisticRegression(regParam=reg)\n",
" \n",
" # put together the pipeline\n",
" pipe = Pipeline(stages=[*si_xvars, *ohe_xvars, si_label, assembler, lr])\n",
"\n",
" # train the model\n",
" model_p = pipe.fit(train)\n",
" \n",
" # make prediction\n",
" pred = model_p.transform(test)\n",
" \n",
" # evaluate. note only 2 metrics are supported out of the box by Spark ML.\n",
" bce = BinaryClassificationEvaluator(rawPredictionCol='rawPrediction')\n",
" au_roc = bce.setMetricName('areaUnderROC').evaluate(pred)\n",
" au_prc = bce.setMetricName('areaUnderPR').evaluate(pred)\n",
"\n",
" print(\"Area under ROC: {}\".format(au_roc))\n",
" print(\"Area Under PR: {}\".format(au_prc))\n",
" \n",
" # log reg, au_roc, au_prc and feature names in run history\n",
" run.log(\"reg\", reg)\n",
" run.log(\"au_roc\", au_roc)\n",
" run.log(\"au_prc\", au_prc)\n",
" run.log_list(\"columns\", train.columns)\n",
"\n",
" # save model\n",
" model_p.write().overwrite().save(model_name)\n",
" \n",
" # upload the serialized model into run history record\n",
" mdl, ext = model_name.split(\".\")\n",
" model_zip = mdl + \".zip\"\n",
" shutil.make_archive(mdl, 'zip', model_dbfs)\n",
" run.upload_file(\"outputs/\" + model_name, model_zip) \n",
" #run.upload_file(\"outputs/\" + model_name, path_or_stream = model_dbfs) #cannot deal with folders\n",
"\n",
" # now delete the serialized model from local folder since it is already uploaded to run history \n",
" shutil.rmtree(model_dbfs)\n",
" os.remove(model_zip)\n",
" \n",
"# Declare run completed\n",
"root_run.complete()\n",
"root_run_id = root_run.id\n",
"print (\"run id:\", root_run.id)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"metrics = root_run.get_metrics(recursive=True)\n",
"best_run_id = max(metrics, key = lambda k: metrics[k]['au_roc'])\n",
"print(best_run_id, metrics[best_run_id]['au_roc'], metrics[best_run_id]['reg'])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#Get the best run\n",
"child_runs = {}\n",
"\n",
"for r in root_run.get_children():\n",
" child_runs[r.id] = r\n",
" \n",
"best_run = child_runs[best_run_id]"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#Download the model from the best run to a local folder\n",
"best_model_file_name = \"best_model.zip\"\n",
"best_run.download_file(name = 'outputs/' + model_name, output_file_path = best_model_file_name)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#Model Evaluation"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"##unzip the model to dbfs (as load() seems to require that) and load it.\n",
"if os.path.isfile(model_dbfs) or os.path.isdir(model_dbfs):\n",
" shutil.rmtree(model_dbfs)\n",
"shutil.unpack_archive(best_model_file_name, model_dbfs)\n",
"\n",
"model_p_best = PipelineModel.load(model_name)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# make prediction\n",
"pred = model_p_best.transform(test)\n",
"output = pred[['hours_per_week','age','workclass','marital_status','income','prediction']]\n",
"display(output.limit(5))"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# evaluate. note only 2 metrics are supported out of the box by Spark ML.\n",
"bce = BinaryClassificationEvaluator(rawPredictionCol='rawPrediction')\n",
"au_roc = bce.setMetricName('areaUnderROC').evaluate(pred)\n",
"au_prc = bce.setMetricName('areaUnderPR').evaluate(pred)\n",
"\n",
"print(\"Area under ROC: {}\".format(au_roc))\n",
"print(\"Area Under PR: {}\".format(au_prc))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#Model Persistence"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"##NOTE: by default the model is saved to and loaded from /dbfs/ instead of cwd!\n",
"model_p_best.write().overwrite().save(model_name)\n",
"print(\"saved model to {}\".format(model_dbfs))"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"%sh\n",
"\n",
"ls -la /dbfs/AdultCensus_runHistory.mml/*"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"dbutils.notebook.exit(\"success\")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/azure-databricks/amlsdk/build-model-run-history-03.png)"
]
}
],
"metadata": {
"authors": [
{
"name": "pasha"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.6"
},
"name": "build-model-run-history-03",
"notebookId": 3836944406456339
},
"nbformat": 4,
"nbformat_minor": 1
}

View File

@@ -1,320 +0,0 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Azure ML & Azure Databricks notebooks by Parashar Shah.\n",
"\n",
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Register Azure Databricks trained model and deploy it to ACI\n"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Please ensure you have run all previous notebooks in sequence before running this.\n",
"\n",
"Please Register Azure Container Instance(ACI) using Azure Portal: https://docs.microsoft.com/en-us/azure/azure-resource-manager/resource-manager-supported-services#portal in your subscription before using the SDK to deploy your ML model to ACI."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import azureml.core\n",
"\n",
"# Check core SDK version number\n",
"print(\"SDK version:\", azureml.core.VERSION)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Set auth to be used by workspace related APIs.\n",
"# For automation or CI/CD ServicePrincipalAuthentication can be used.\n",
"# https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.authentication.serviceprincipalauthentication?view=azure-ml-py\n",
"auth = None"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Workspace\n",
"\n",
"ws = Workspace.from_config(auth = auth)\n",
"print('Workspace name: ' + ws.name, \n",
" 'Azure region: ' + ws.location, \n",
" 'Subscription id: ' + ws.subscription_id, \n",
" 'Resource group: ' + ws.resource_group, sep = '\\n')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"##NOTE: service deployment always gets the model from the current working dir.\n",
"import os\n",
"\n",
"model_name = \"AdultCensus_runHistory.mml\" # \n",
"model_name_dbfs = os.path.join(\"/dbfs\", model_name)\n",
"\n",
"print(\"copy model from dbfs to local\")\n",
"model_local = \"file:\" + os.getcwd() + \"/\" + model_name\n",
"dbutils.fs.cp(model_name, model_local, True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#Register the model\n",
"from azureml.core.model import Model\n",
"mymodel = Model.register(model_path = model_name, # this points to a local file\n",
" model_name = model_name, # this is the name the model is registered as, am using same name for both path and name. \n",
" description = \"ADB trained model by Parashar\",\n",
" workspace = ws)\n",
"\n",
"print(mymodel.name, mymodel.description, mymodel.version)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#%%writefile score_sparkml.py\n",
"score_sparkml = \"\"\"\n",
" \n",
"import json\n",
" \n",
"def init():\n",
" # One-time initialization of PySpark and predictive model\n",
" import pyspark\n",
" import os\n",
" from azureml.core.model import Model\n",
" from pyspark.ml import PipelineModel\n",
" \n",
" global trainedModel\n",
" global spark\n",
" \n",
" spark = pyspark.sql.SparkSession.builder.appName(\"ADB and AML notebook by Parashar\").getOrCreate()\n",
" model_name = \"{model_name}\" #interpolated\n",
" # AZUREML_MODEL_DIR is an environment variable created during deployment.\n",
" # It is the path to the model folder (./azureml-models/$MODEL_NAME/$VERSION)\n",
" # For multiple models, it points to the folder containing all deployed models (./azureml-models)\n",
" model_path = os.path.join(os.getenv('AZUREML_MODEL_DIR'), model_name)\n",
" trainedModel = PipelineModel.load(model_path)\n",
" \n",
"def run(input_json):\n",
" if isinstance(trainedModel, Exception):\n",
" return json.dumps({{\"trainedModel\":str(trainedModel)}})\n",
" \n",
" try:\n",
" sc = spark.sparkContext\n",
" input_list = json.loads(input_json)\n",
" input_rdd = sc.parallelize(input_list)\n",
" input_df = spark.read.json(input_rdd)\n",
" \n",
" # Compute prediction\n",
" prediction = trainedModel.transform(input_df)\n",
" #result = prediction.first().prediction\n",
" predictions = prediction.collect()\n",
" \n",
" #Get each scored result\n",
" preds = [str(x['prediction']) for x in predictions]\n",
" result = \",\".join(preds)\n",
" # you can return any data type as long as it is JSON-serializable\n",
" return result.tolist()\n",
" except Exception as e:\n",
" result = str(e)\n",
" return result\n",
" \n",
"\"\"\".format(model_name=model_name)\n",
" \n",
"exec(score_sparkml)\n",
" \n",
"with open(\"score_sparkml.py\", \"w\") as file:\n",
" file.write(score_sparkml)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.conda_dependencies import CondaDependencies \n",
"\n",
"myacienv = CondaDependencies.create(conda_packages=['scikit-learn','numpy','pandas']) # showing how to add libs as an eg. - not needed for this model.\n",
"\n",
"with open(\"myenv.yml\",\"w\") as f:\n",
" f.write(myacienv.serialize_to_string())"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#deploy to ACI\n",
"from azureml.core.webservice import AciWebservice, Webservice\n",
"from azureml.exceptions import WebserviceException\n",
"from azureml.core.model import InferenceConfig\n",
"from azureml.core.environment import Environment\n",
"from azureml.core.conda_dependencies import CondaDependencies\n",
"\n",
"\n",
"myaci_config = AciWebservice.deploy_configuration(cpu_cores = 2, \n",
" memory_gb = 2, \n",
" tags = {'name':'Databricks Azure ML ACI'}, \n",
" description = 'This is for ADB and AML example.')\n",
"\n",
"service_name = 'aciws'\n",
"\n",
"# Remove any existing service under the same name.\n",
"try:\n",
" Webservice(ws, service_name).delete()\n",
"except WebserviceException:\n",
" pass\n",
"\n",
"myenv = Environment.get(ws, name='AzureML-PySpark-MmlSpark-0.15')\n",
"# we need to add extra packages to procured environment\n",
"# in order to deploy amended environment we need to rename it\n",
"myenv.name = 'myenv'\n",
"model_dependencies = CondaDependencies('myenv.yml')\n",
"for pip_dep in model_dependencies.pip_packages:\n",
" myenv.python.conda_dependencies.add_pip_package(pip_dep)\n",
"for conda_dep in model_dependencies.conda_packages:\n",
" myenv.python.conda_dependencies.add_conda_package(conda_dep)\n",
"inference_config = InferenceConfig(entry_script='score_sparkml.py', environment=myenv)\n",
"\n",
"myservice = Model.deploy(ws, service_name, [mymodel], inference_config, myaci_config)\n",
"myservice.wait_for_deployment(show_output=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"help(Webservice)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#for using the Web HTTP API \n",
"print(myservice.scoring_uri)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import json\n",
"\n",
"#get the some sample data\n",
"test_data_path = \"AdultCensusIncomeTest\"\n",
"test = spark.read.parquet(test_data_path).limit(5)\n",
"\n",
"test_json = json.dumps(test.toJSON().collect())\n",
"\n",
"print(test_json)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#using data defined above predict if income is >50K (1) or <=50K (0)\n",
"myservice.run(input_data=test_json)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#comment to not delete the web service\n",
"myservice.delete()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Deploying to other types of computes\n",
"\n",
"In order to learn how to deploy to other types of compute targets, such as AKS, please take a look at the set of notebooks in the [deployment](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/deployment) folder."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/azure-databricks/amlsdk/deploy-to-aci-04.png)"
]
}
],
"metadata": {
"authors": [
{
"name": "pasha"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.8"
},
"name": "deploy-to-aci-04",
"notebookId": 3836944406456376
},
"nbformat": 4,
"nbformat_minor": 1
}

View File

@@ -1,179 +0,0 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Azure ML & Azure Databricks notebooks by Parashar Shah.\n",
"\n",
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#Data Ingestion"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"import urllib"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Download AdultCensusIncome.csv from Azure CDN. This file has 32,561 rows.\n",
"dataurl = \"https://amldockerdatasets.azureedge.net/AdultCensusIncome.csv\"\n",
"datafile = \"AdultCensusIncome.csv\"\n",
"datafile_dbfs = os.path.join(\"/dbfs\", datafile)\n",
"\n",
"if os.path.isfile(datafile_dbfs):\n",
" print(\"found {} at {}\".format(datafile, datafile_dbfs))\n",
"else:\n",
" print(\"downloading {} to {}\".format(datafile, datafile_dbfs))\n",
" urllib.request.urlretrieve(dataurl, datafile_dbfs)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Create a Spark dataframe out of the csv file.\n",
"data_all = sqlContext.read.format('csv').options(header='true', inferSchema='true', ignoreLeadingWhiteSpace='true', ignoreTrailingWhiteSpace='true').load(datafile)\n",
"print(\"({}, {})\".format(data_all.count(), len(data_all.columns)))\n",
"data_all.printSchema()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#renaming columns\n",
"columns_new = [col.replace(\"-\", \"_\") for col in data_all.columns]\n",
"data_all = data_all.toDF(*columns_new)\n",
"data_all.printSchema()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"display(data_all.limit(5))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#Data Preparation"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Choose feature columns and the label column.\n",
"label = \"income\"\n",
"xvars = set(data_all.columns) - {label}\n",
"\n",
"print(\"label = {}\".format(label))\n",
"print(\"features = {}\".format(xvars))\n",
"\n",
"data = data_all.select([*xvars, label])\n",
"\n",
"# Split data into train and test.\n",
"train, test = data.randomSplit([0.75, 0.25], seed=123)\n",
"\n",
"print(\"train ({}, {})\".format(train.count(), len(train.columns)))\n",
"print(\"test ({}, {})\".format(test.count(), len(test.columns)))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#Data Persistence"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Write the train and test data sets to intermediate storage\n",
"train_data_path = \"AdultCensusIncomeTrain\"\n",
"test_data_path = \"AdultCensusIncomeTest\"\n",
"\n",
"train_data_path_dbfs = os.path.join(\"/dbfs\", \"AdultCensusIncomeTrain\")\n",
"test_data_path_dbfs = os.path.join(\"/dbfs\", \"AdultCensusIncomeTest\")\n",
"\n",
"train.write.mode('overwrite').parquet(train_data_path)\n",
"test.write.mode('overwrite').parquet(test_data_path)\n",
"print(\"train and test datasets saved to {} and {}\".format(train_data_path_dbfs, test_data_path_dbfs))"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/azure-databricks/amlsdk/ingest-data-02.png)"
]
}
],
"metadata": {
"authors": [
{
"name": "pasha"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.6"
},
"name": "ingest-data-02",
"notebookId": 3836944406456362
},
"nbformat": 4,
"nbformat_minor": 1
}

View File

@@ -1,183 +0,0 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Azure ML & Azure Databricks notebooks by Parashar Shah.\n",
"\n",
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We support installing AML SDK as library from GUI. When attaching a library follow this https://docs.databricks.com/user-guide/libraries.html and add the below string as your PyPi package. You can select the option to attach the library to all clusters or just one cluster.\n",
"\n",
"**install azureml-sdk**\n",
"* Source: Upload Python Egg or PyPi\n",
"* PyPi Name: `azureml-sdk[databricks]`\n",
"* Select Install Library"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import azureml.core\n",
"\n",
"# Check core SDK version number - based on build number of preview/master.\n",
"print(\"SDK version:\", azureml.core.VERSION)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Please specify the Azure subscription Id, resource group name, workspace name, and the region in which you want to create the Azure Machine Learning Workspace.\n",
"\n",
"You can get the value of your Azure subscription ID from the Azure Portal, and then selecting Subscriptions from the menu on the left.\n",
"\n",
"For the resource_group, use the name of the resource group that contains your Azure Databricks Workspace.\n",
"\n",
"NOTE: If you provide a resource group name that does not exist, the resource group will be automatically created. This may or may not succeed in your environment, depending on the permissions you have on your Azure Subscription."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# subscription_id = \"<your-subscription-id>\"\n",
"# resource_group = \"<your-existing-resource-group>\"\n",
"# workspace_name = \"<a-new-or-existing-workspace; it is unrelated to Databricks workspace>\"\n",
"# workspace_region = \"<your-resource group-region>\""
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Set auth to be used by workspace related APIs.\n",
"# For automation or CI/CD ServicePrincipalAuthentication can be used.\n",
"# https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.authentication.serviceprincipalauthentication?view=azure-ml-py\n",
"auth = None"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# import the Workspace class and check the azureml SDK version\n",
"# exist_ok checks if workspace exists or not.\n",
"\n",
"from azureml.core import Workspace\n",
"\n",
"ws = Workspace.create(name = workspace_name,\n",
" subscription_id = subscription_id,\n",
" resource_group = resource_group, \n",
" location = workspace_region,\n",
" auth = auth,\n",
" exist_ok=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#get workspace details\n",
"ws.get_details()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ws = Workspace(workspace_name = workspace_name,\n",
" subscription_id = subscription_id,\n",
" resource_group = resource_group,\n",
" auth = auth)\n",
"\n",
"# persist the subscription id, resource group name, and workspace name in aml_config/config.json.\n",
"ws.write_config()\n",
"#if you need to give a different path/filename please use this\n",
"#write_config(path=\"/databricks/driver/aml_config/\",file_name=<alias_conf.cfg>)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"help(Workspace)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# import the Workspace class and check the azureml SDK version\n",
"from azureml.core import Workspace\n",
"\n",
"ws = Workspace.from_config(auth = auth)\n",
"#ws = Workspace.from_config(<full path>)\n",
"print('Workspace name: ' + ws.name, \n",
" 'Azure region: ' + ws.location, \n",
" 'Subscription id: ' + ws.subscription_id, \n",
" 'Resource group: ' + ws.resource_group, sep = '\\n')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/azure-databricks/amlsdk/installation-and-configuration-01.png)"
]
}
],
"metadata": {
"authors": [
{
"name": "pasha"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.6"
},
"name": "installation-and-configuration-01",
"notebookId": 3688394266452835
},
"nbformat": 4,
"nbformat_minor": 1
}

View File

@@ -1,9 +1,21 @@
# Adding an init script to an Azure Databricks cluster
# Automated ML introduction
Automated machine learning (automated ML) builds high quality machine learning models for you by automating model and hyperparameter selection. Bring a labelled dataset that you want to build a model for, automated ML will give you a high quality machine learning model that you can use for predictions.
The [azureml-cluster-init.sh](./azureml-cluster-init.sh) script configures the environment to
1. Install the latest AutoML library
To create the Azure Databricks cluster-scoped init script
If you are new to Data Science, automated ML will help you get jumpstarted by simplifying machine learning model building. It abstracts you from needing to perform model selection, hyperparameter selection and in one step creates a high quality trained model for you to use.
If you are an experienced data scientist, automated ML will help increase your productivity by intelligently performing the model and hyperparameter selection for your training and generates high quality models much quicker than manually specifying several combinations of the parameters and running training jobs. Automated ML provides visibility and access to all the training jobs and the performance characteristics of the models to help you further tune the pipeline if you desire.
# Install Instructions using Azure Databricks :
#### For Databricks non ML runtime 7.1(scala 2.21, spark 3.0.0) and up, Install Automated Machine Learning sdk by adding and running the following command as the first cell of your notebook. This will install AutoML dependencies specific for your notebook.
%pip install --upgrade --force-reinstall -r https://aka.ms/automl_linux_requirements.txt
#### For Databricks non ML runtime 7.0 and lower, Install Automated Machine Learning sdk using init script as shown below before running the notebook.**
**Create the Azure Databricks cluster-scoped init script 'azureml-cluster-init.sh' as below
1. Create the base directory you want to store the init script in if it does not exist.
```
@@ -15,7 +27,7 @@ To create the Azure Databricks cluster-scoped init script
dbutils.fs.put("/databricks/init/azureml-cluster-init.sh","""
#!/bin/bash
set -ex
/databricks/python/bin/pip install -r https://aka.ms/automl_linux_requirements.txt
/databricks/python/bin/pip install --upgrade --force-reinstall -r https://aka.ms/automl_linux_requirements.txt
""", True)
```
@@ -24,6 +36,8 @@ To create the Azure Databricks cluster-scoped init script
display(dbutils.fs.ls("dbfs:/databricks/init/azureml-cluster-init.sh"))
```
**Install libraries to cluster using init script 'azureml-cluster-init.sh' created in previous step
1. Configure the cluster to run the script.
* Using the cluster configuration page
1. On the cluster configuration page, click the Advanced Options toggle.

View File

@@ -17,9 +17,9 @@
"\n",
"**For Databricks non ML runtime 7.1(scala 2.21, spark 3.0.0) and up, Install AML sdk by running the following command in the first cell of the notebook.**\n",
"\n",
"%pip install -r https://aka.ms/automl_linux_requirements.txt\n",
"%pip install --upgrade --force-reinstall -r https://aka.ms/automl_linux_requirements.txt\n",
"\n",
"**For Databricks non ML runtime 7.0 and lower, Install AML sdk using init script as shown in [readme](readme.md) before running this notebook.**\n"
"**For Databricks non ML runtime 7.0 and lower, Install AML sdk using init script as shown in [readme](https://github.com/Azure/MachineLearningNotebooks/blob/master/how-to-use-azureml/azure-databricks/automl/README.md) before running this notebook.**\n"
]
},
{

View File

@@ -17,9 +17,9 @@
"\n",
"**For Databricks non ML runtime 7.1(scala 2.21, spark 3.0.0) and up, Install AML sdk by running the following command in the first cell of the notebook.**\n",
"\n",
"%pip install -r https://aka.ms/automl_linux_requirements.txt\n",
"%pip install --upgrade --force-reinstall -r https://aka.ms/automl_linux_requirements.txt\n",
"\n",
"**For Databricks non ML runtime 7.0 and lower, Install AML sdk using init script as shown in [readme](readme.md) before running this notebook.**"
"**For Databricks non ML runtime 7.0 and lower, Install AML sdk using init script as shown in [readme](https://github.com/Azure/MachineLearningNotebooks/blob/master/how-to-use-azureml/azure-databricks/automl/README.md) before running this notebook.**"
]
},
{

View File

@@ -1,719 +0,0 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Copyright (c) Microsoft Corporation. All rights reserved. \n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Using Databricks as a Compute Target from Azure Machine Learning Pipeline\n",
"To use Databricks as a compute target from [Azure Machine Learning Pipeline](https://aka.ms/pl-concept), a [DatabricksStep](https://docs.microsoft.com/en-us/python/api/azureml-pipeline-steps/azureml.pipeline.steps.databricks_step.databricksstep?view=azure-ml-py) is used. This notebook demonstrates the use of DatabricksStep in Azure Machine Learning Pipeline.\n",
"\n",
"The notebook will show:\n",
"1. Running an arbitrary Databricks notebook that the customer has in Databricks workspace\n",
"2. Running an arbitrary Python script that the customer has in DBFS\n",
"3. Running an arbitrary Python script that is available on local computer (will upload to DBFS, and then run in Databricks) \n",
"4. Running a JAR job that the customer has in DBFS.\n",
"\n",
"## Before you begin:\n",
"\n",
"1. **Create an Azure Databricks workspace** in the same subscription where you have your Azure Machine Learning workspace. You will need details of this workspace later on to define DatabricksStep. [Click here](https://ms.portal.azure.com/#blade/HubsExtension/Resources/resourceType/Microsoft.Databricks%2Fworkspaces) for more information.\n",
"2. **Create PAT (access token)**: Manually create a Databricks access token at the Azure Databricks portal. See [this](https://docs.databricks.com/api/latest/authentication.html#generate-a-token) for more information.\n",
"3. **Add demo notebook to ADB**: This notebook has a sample you can use as is. Launch Azure Databricks attached to your Azure Machine Learning workspace and add a new notebook. \n",
"4. **Create/attach a Blob storage** for use from ADB"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Add demo notebook to ADB Workspace\n",
"Copy and paste the below code to create a new notebook in your ADB workspace."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"```python\n",
"# direct access\n",
"dbutils.widgets.get(\"myparam\")\n",
"p = getArgument(\"myparam\")\n",
"print (\"Param -\\'myparam':\")\n",
"print (p)\n",
"\n",
"dbutils.widgets.get(\"input\")\n",
"i = getArgument(\"input\")\n",
"print (\"Param -\\'input':\")\n",
"print (i)\n",
"\n",
"dbutils.widgets.get(\"output\")\n",
"o = getArgument(\"output\")\n",
"print (\"Param -\\'output':\")\n",
"print (o)\n",
"\n",
"n = i + \"/testdata.txt\"\n",
"df = spark.read.csv(n)\n",
"\n",
"display (df)\n",
"\n",
"data = [('value1', 'value2')]\n",
"df2 = spark.createDataFrame(data)\n",
"\n",
"z = o + \"/output.txt\"\n",
"df2.write.csv(z)\n",
"```"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Azure Machine Learning and Pipeline SDK-specific imports"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"import azureml.core\n",
"from azureml.core.runconfig import JarLibrary\n",
"from azureml.core.compute import ComputeTarget, DatabricksCompute\n",
"from azureml.exceptions import ComputeTargetException\n",
"from azureml.core import Workspace, Experiment\n",
"from azureml.pipeline.core import Pipeline, PipelineData\n",
"from azureml.pipeline.steps import DatabricksStep\n",
"from azureml.core.datastore import Datastore\n",
"from azureml.data.data_reference import DataReference\n",
"\n",
"# Check core SDK version number\n",
"print(\"SDK version:\", azureml.core.VERSION)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Initialize Workspace\n",
"\n",
"Initialize a workspace object from persisted configuration. Make sure the config file is present at .\\config.json"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ws = Workspace.from_config()\n",
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep = '\\n')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Attach Databricks compute target\n",
"Next, you need to add your Databricks workspace to Azure Machine Learning as a compute target and give it a name. You will use this name to refer to your Databricks workspace compute target inside Azure Machine Learning.\n",
"\n",
"- **Resource Group** - The resource group name of your Azure Machine Learning workspace\n",
"- **Databricks Workspace Name** - The workspace name of your Azure Databricks workspace\n",
"- **Databricks Access Token** - The access token you created in ADB\n",
"\n",
"**The Databricks workspace need to be present in the same subscription as your AML workspace**"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Replace with your account info before running.\n",
" \n",
"db_compute_name=os.getenv(\"DATABRICKS_COMPUTE_NAME\", \"<my-databricks-compute-name>\") # Databricks compute name\n",
"db_resource_group=os.getenv(\"DATABRICKS_RESOURCE_GROUP\", \"<my-db-resource-group>\") # Databricks resource group\n",
"db_workspace_name=os.getenv(\"DATABRICKS_WORKSPACE_NAME\", \"<my-db-workspace-name>\") # Databricks workspace name\n",
"db_access_token=os.getenv(\"DATABRICKS_ACCESS_TOKEN\", \"<my-access-token>\") # Databricks access token\n",
" \n",
"try:\n",
" databricks_compute = DatabricksCompute(workspace=ws, name=db_compute_name)\n",
" print('Compute target {} already exists'.format(db_compute_name))\n",
"except ComputeTargetException:\n",
" print('Compute not found, will use below parameters to attach new one')\n",
" print('db_compute_name {}'.format(db_compute_name))\n",
" print('db_resource_group {}'.format(db_resource_group))\n",
" print('db_workspace_name {}'.format(db_workspace_name))\n",
" print('db_access_token {}'.format(db_access_token))\n",
" \n",
" config = DatabricksCompute.attach_configuration(\n",
" resource_group = db_resource_group,\n",
" workspace_name = db_workspace_name,\n",
" access_token= db_access_token)\n",
" databricks_compute=ComputeTarget.attach(ws, db_compute_name, config)\n",
" databricks_compute.wait_for_completion(True)\n"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Data Connections with Inputs and Outputs\n",
"The DatabricksStep supports Azure Bloband ADLS for inputs and outputs. You also will need to define a [Secrets](https://docs.azuredatabricks.net/user-guide/secrets/index.html) scope to enable authentication to external data sources such as Blob and ADLS from Databricks.\n",
"\n",
"- Databricks documentation on [Azure Blob](https://docs.azuredatabricks.net/spark/latest/data-sources/azure/azure-storage.html)\n",
"- Databricks documentation on [ADLS](https://docs.databricks.com/spark/latest/data-sources/azure/azure-datalake.html)\n",
"\n",
"### Type of Data Access\n",
"Databricks allows to interact with Azure Blob and ADLS in two ways.\n",
"- **Direct Access**: Databricks allows you to interact with Azure Blob or ADLS URIs directly. The input or output URIs will be mapped to a Databricks widget param in the Databricks notebook.\n",
"- **Mounting**: You will be supplied with additional parameters and secrets that will enable you to mount your ADLS or Azure Blob input or output location in your Databricks notebook."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Direct Access: Python sample code\n",
"If you have a data reference named \"input\" it will represent the URI of the input and you can access it directly in the Databricks python notebook like so:"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"```python\n",
"dbutils.widgets.get(\"input\")\n",
"y = getArgument(\"input\")\n",
"df = spark.read.csv(y)\n",
"```"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Mounting: Python sample code for Azure Blob\n",
"Given an Azure Blob data reference named \"input\" the following widget params will be made available in the Databricks notebook:"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"```python\n",
"# This contains the input URI\n",
"dbutils.widgets.get(\"input\")\n",
"myinput_uri = getArgument(\"input\")\n",
"\n",
"# How to get the input datastore name inside ADB notebook\n",
"# This contains the name of a Databricks secret (in the predefined \"amlscope\" secret scope) \n",
"# that contians an access key or sas for the Azure Blob input (this name is obtained by appending \n",
"# the name of the input with \"_blob_secretname\". \n",
"dbutils.widgets.get(\"input_blob_secretname\") \n",
"myinput_blob_secretname = getArgument(\"input_blob_secretname\")\n",
"\n",
"# This contains the required configuration for mounting\n",
"dbutils.widgets.get(\"input_blob_config\")\n",
"myinput_blob_config = getArgument(\"input_blob_config\")\n",
"\n",
"# Usage\n",
"dbutils.fs.mount(\n",
" source = myinput_uri,\n",
" mount_point = \"/mnt/input\",\n",
" extra_configs = {myinput_blob_config:dbutils.secrets.get(scope = \"amlscope\", key = myinput_blob_secretname)})\n",
"```"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Mounting: Python sample code for ADLS\n",
"Given an ADLS data reference named \"input\" the following widget params will be made available in the Databricks notebook:"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"```python\n",
"# This contains the input URI\n",
"dbutils.widgets.get(\"input\") \n",
"myinput_uri = getArgument(\"input\")\n",
"\n",
"# This contains the client id for the service principal \n",
"# that has access to the adls input\n",
"dbutils.widgets.get(\"input_adls_clientid\") \n",
"myinput_adls_clientid = getArgument(\"input_adls_clientid\")\n",
"\n",
"# This contains the name of a Databricks secret (in the predefined \"amlscope\" secret scope) \n",
"# that contains the secret for the above mentioned service principal\n",
"dbutils.widgets.get(\"input_adls_secretname\") \n",
"myinput_adls_secretname = getArgument(\"input_adls_secretname\")\n",
"\n",
"# This contains the refresh url for the mounting configs\n",
"dbutils.widgets.get(\"input_adls_refresh_url\") \n",
"myinput_adls_refresh_url = getArgument(\"input_adls_refresh_url\")\n",
"\n",
"# Usage \n",
"configs = {\"dfs.adls.oauth2.access.token.provider.type\": \"ClientCredential\",\n",
" \"dfs.adls.oauth2.client.id\": myinput_adls_clientid,\n",
" \"dfs.adls.oauth2.credential\": dbutils.secrets.get(scope = \"amlscope\", key =myinput_adls_secretname),\n",
" \"dfs.adls.oauth2.refresh.url\": myinput_adls_refresh_url}\n",
"\n",
"dbutils.fs.mount(\n",
" source = myinput_uri,\n",
" mount_point = \"/mnt/output\",\n",
" extra_configs = configs)\n",
"```"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Use Databricks from Azure Machine Learning Pipeline\n",
"To use Databricks as a compute target from Azure Machine Learning Pipeline, a DatabricksStep is used. Let's define a datasource (via DataReference) and intermediate data (via PipelineData) to be used in DatabricksStep."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Use the default blob storage\n",
"def_blob_store = Datastore(ws, \"workspaceblobstore\")\n",
"print('Datastore {} will be used'.format(def_blob_store.name))\n",
"\n",
"# We are uploading a sample file in the local directory to be used as a datasource\n",
"def_blob_store.upload_files(files=[\"./testdata.txt\"], target_path=\"dbtest\", overwrite=False)\n",
"\n",
"step_1_input = DataReference(datastore=def_blob_store, path_on_datastore=\"dbtest\",\n",
" data_reference_name=\"input\")\n",
"\n",
"step_1_output = PipelineData(\"output\", datastore=def_blob_store)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Add a DatabricksStep\n",
"Adds a Databricks notebook as a step in a Pipeline.\n",
"- ***name:** Name of the Module\n",
"- **inputs:** List of input connections for data consumed by this step. Fetch this inside the notebook using dbutils.widgets.get(\"input\")\n",
"- **outputs:** List of output port definitions for outputs produced by this step. Fetch this inside the notebook using dbutils.widgets.get(\"output\")\n",
"- **existing_cluster_id:** Cluster ID of an existing Interactive cluster on the Databricks workspace. If you are providing this, do not provide any of the parameters below that are used to create a new cluster such as spark_version, node_type, etc.\n",
"- **spark_version:** Version of spark for the databricks run cluster. default value: 4.0.x-scala2.11\n",
"- **node_type:** Azure vm node types for the databricks run cluster. default value: Standard_D3_v2\n",
"- **num_workers:** Specifies a static number of workers for the databricks run cluster\n",
"- **min_workers:** Specifies a min number of workers to use for auto-scaling the databricks run cluster\n",
"- **max_workers:** Specifies a max number of workers to use for auto-scaling the databricks run cluster\n",
"- **spark_env_variables:** Spark environment variables for the databricks run cluster (dictionary of {str:str}). default value: {'PYSPARK_PYTHON': '/databricks/python3/bin/python3'}\n",
"- **notebook_path:** Path to the notebook in the databricks instance. If you are providing this, do not provide python script related paramaters or JAR related parameters.\n",
"- **notebook_params:** Parameters for the databricks notebook (dictionary of {str:str}). Fetch this inside the notebook using dbutils.widgets.get(\"myparam\")\n",
"- **python_script_path:** The path to the python script in the DBFS or S3. If you are providing this, do not provide python_script_name which is used for uploading script from local machine.\n",
"- **python_script_params:** Parameters for the python script (list of str)\n",
"- **main_class_name:** The name of the entry point in a JAR module. If you are providing this, do not provide any python script or notebook related parameters.\n",
"- **jar_params:** Parameters for the JAR module (list of str)\n",
"- **python_script_name:** name of a python script on your local machine (relative to source_directory). If you are providing this do not provide python_script_path which is used to execute a remote python script; or any of the JAR or notebook related parameters.\n",
"- **source_directory:** folder that contains the script and other files\n",
"- **hash_paths:** list of paths to hash to detect a change in source_directory (script file is always hashed)\n",
"- **run_name:** Name in databricks for this run\n",
"- **timeout_seconds:** Timeout for the databricks run\n",
"- **runconfig:** Runconfig to use. Either pass runconfig or each library type as a separate parameter but do not mix the two\n",
"- **maven_libraries:** maven libraries for the databricks run\n",
"- **pypi_libraries:** pypi libraries for the databricks run\n",
"- **egg_libraries:** egg libraries for the databricks run\n",
"- **jar_libraries:** jar libraries for the databricks run\n",
"- **rcran_libraries:** rcran libraries for the databricks run\n",
"- **compute_target:** Azure Databricks compute\n",
"- **allow_reuse:** Whether the step should reuse previous results when run with the same settings/inputs\n",
"- **version:** Optional version tag to denote a change in functionality for the step\n",
"\n",
"\\* *denotes required fields* \n",
"*You must provide exactly one of num_workers or min_workers and max_workers paramaters* \n",
"*You must provide exactly one of databricks_compute or databricks_compute_name parameters*\n",
"\n",
"## Use runconfig to specify library dependencies\n",
"You can use a runconfig to specify the library dependencies for your cluster in Databricks. The runconfig will contain a databricks section as follows:\n",
"\n",
"```yaml\n",
"environment:\n",
"# Databricks details\n",
" databricks:\n",
"# List of maven libraries.\n",
" mavenLibraries:\n",
" - coordinates: org.jsoup:jsoup:1.7.1\n",
" repo: ''\n",
" exclusions:\n",
" - slf4j:slf4j\n",
" - '*:hadoop-client'\n",
"# List of PyPi libraries\n",
" pypiLibraries:\n",
" - package: beautifulsoup4\n",
" repo: ''\n",
"# List of RCran libraries\n",
" rcranLibraries:\n",
" -\n",
"# Coordinates.\n",
" package: ada\n",
"# Repo\n",
" repo: http://cran.us.r-project.org\n",
"# List of JAR libraries\n",
" jarLibraries:\n",
" -\n",
"# Coordinates.\n",
" library: dbfs:/mnt/libraries/library.jar\n",
"# List of Egg libraries\n",
" eggLibraries:\n",
" -\n",
"# Coordinates.\n",
" library: dbfs:/mnt/libraries/library.egg\n",
"```\n",
"\n",
"You can then create a RunConfiguration object using this file and pass it as the runconfig parameter to DatabricksStep.\n",
"```python\n",
"from azureml.core.runconfig import RunConfiguration\n",
"\n",
"runconfig = RunConfiguration()\n",
"runconfig.load(path='<directory_where_runconfig_is_stored>', name='<runconfig_file_name>')\n",
"```"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### 1. Running the demo notebook already added to the Databricks workspace\n",
"Create a notebook in the Azure Databricks workspace, and provide the path to that notebook as the value associated with the environment variable \"DATABRICKS_NOTEBOOK_PATH\". This will then set the variable\u00c2\u00a0notebook_path\u00c2\u00a0when you run the code cell below:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"tags": [
"databricksstep-remarks-sample"
]
},
"outputs": [],
"source": [
"notebook_path=os.getenv(\"DATABRICKS_NOTEBOOK_PATH\", \"<my-databricks-notebook-path>\") # Databricks notebook path\n",
"\n",
"dbNbStep = DatabricksStep(\n",
" name=\"DBNotebookInWS\",\n",
" inputs=[step_1_input],\n",
" outputs=[step_1_output],\n",
" num_workers=1,\n",
" notebook_path=notebook_path,\n",
" notebook_params={'myparam': 'testparam'},\n",
" run_name='DB_Notebook_demo',\n",
" compute_target=databricks_compute,\n",
" allow_reuse=True\n",
")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Build and submit the Experiment"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"steps = [dbNbStep]\n",
"pipeline = Pipeline(workspace=ws, steps=steps)\n",
"pipeline_run = Experiment(ws, 'DB_Notebook_demo').submit(pipeline)\n",
"pipeline_run.wait_for_completion()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### View Run Details"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.widgets import RunDetails\n",
"RunDetails(pipeline_run).show()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### 2. Running a Python script from DBFS\n",
"This shows how to run a Python script in DBFS. \n",
"\n",
"To complete this, you will need to first upload the Python script in your local machine to DBFS using the [CLI](https://docs.azuredatabricks.net/user-guide/dbfs-databricks-file-system.html). The CLI command is given below:\n",
"\n",
"```\n",
"dbfs cp ./train-db-dbfs.py dbfs:/train-db-dbfs.py\n",
"```\n",
"\n",
"The code in the below cell assumes that you have completed the previous step of uploading the script `train-db-dbfs.py` to the root folder in DBFS."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"python_script_path = os.getenv(\"DATABRICKS_PYTHON_SCRIPT_PATH\", \"<my-databricks-python-script-path>\") # Databricks python script path\n",
"\n",
"dbPythonInDbfsStep = DatabricksStep(\n",
" name=\"DBPythonInDBFS\",\n",
" inputs=[step_1_input],\n",
" num_workers=1,\n",
" python_script_path=python_script_path,\n",
" python_script_params={'--input_data'},\n",
" run_name='DB_Python_demo',\n",
" compute_target=databricks_compute,\n",
" allow_reuse=True\n",
")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Build and submit the Experiment"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"steps = [dbPythonInDbfsStep]\n",
"pipeline = Pipeline(workspace=ws, steps=steps)\n",
"pipeline_run = Experiment(ws, 'DB_Python_demo').submit(pipeline)\n",
"pipeline_run.wait_for_completion()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### View Run Details"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.widgets import RunDetails\n",
"RunDetails(pipeline_run).show()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### 3. Running a Python script in Databricks that currenlty is in local computer\n",
"To run a Python script that is currently in your local computer, follow the instructions below. \n",
"\n",
"The commented out code below code assumes that you have `train-db-local.py` in the `scripts` subdirectory under the current working directory.\n",
"\n",
"In this case, the Python script will be uploaded first to DBFS, and then the script will be run in Databricks."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"python_script_name = \"train-db-local.py\"\n",
"source_directory = \".\"\n",
"\n",
"dbPythonInLocalMachineStep = DatabricksStep(\n",
" name=\"DBPythonInLocalMachine\",\n",
" inputs=[step_1_input],\n",
" num_workers=1,\n",
" python_script_name=python_script_name,\n",
" source_directory=source_directory,\n",
" run_name='DB_Python_Local_demo',\n",
" compute_target=databricks_compute,\n",
" allow_reuse=True\n",
")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Build and submit the Experiment"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"steps = [dbPythonInLocalMachineStep]\n",
"pipeline = Pipeline(workspace=ws, steps=steps)\n",
"pipeline_run = Experiment(ws, 'DB_Python_Local_demo').submit(pipeline)\n",
"pipeline_run.wait_for_completion()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### View Run Details"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.widgets import RunDetails\n",
"RunDetails(pipeline_run).show()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### 4. Running a JAR job that is alreay added in DBFS\n",
"To run a JAR job that is already uploaded to DBFS, follow the instructions below. You will first upload the JAR file to DBFS using the [CLI](https://docs.azuredatabricks.net/user-guide/dbfs-databricks-file-system.html).\n",
"\n",
"The commented out code in the below cell assumes that you have uploaded `train-db-dbfs.jar` to the root folder in DBFS. You can upload `train-db-dbfs.jar` to the root folder in DBFS using this commandline so you can use `jar_library_dbfs_path = \"dbfs:/train-db-dbfs.jar\"`:\n",
"\n",
"```\n",
"dbfs cp ./train-db-dbfs.jar dbfs:/train-db-dbfs.jar\n",
"```"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"main_jar_class_name = \"com.microsoft.aeva.Main\"\n",
"jar_library_dbfs_path = os.getenv(\"DATABRICKS_JAR_LIB_PATH\", \"<my-databricks-jar-lib-path>\") # Databricks jar library path\n",
"\n",
"dbJarInDbfsStep = DatabricksStep(\n",
" name=\"DBJarInDBFS\",\n",
" inputs=[step_1_input],\n",
" num_workers=1,\n",
" main_class_name=main_jar_class_name,\n",
" jar_params={'arg1', 'arg2'},\n",
" run_name='DB_JAR_demo',\n",
" jar_libraries=[JarLibrary(jar_library_dbfs_path)],\n",
" compute_target=databricks_compute,\n",
" allow_reuse=True\n",
")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Build and submit the Experiment"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"steps = [dbJarInDbfsStep]\n",
"pipeline = Pipeline(workspace=ws, steps=steps)\n",
"pipeline_run = Experiment(ws, 'DB_JAR_demo').submit(pipeline)\n",
"pipeline_run.wait_for_completion()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### View Run Details"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.widgets import RunDetails\n",
"RunDetails(pipeline_run).show()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Next: ADLA as a Compute Target\n",
"To use ADLA as a compute target from Azure Machine Learning Pipeline, a AdlaStep is used. This [notebook](https://aka.ms/pl-adla) demonstrates the use of AdlaStep in Azure Machine Learning Pipeline."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/azure-databricks/databricks-as-remote-compute-target/aml-pipelines-use-databricks-as-compute-target.png)"
]
}
],
"metadata": {
"authors": [
{
"name": "diray"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.2"
}
},
"nbformat": 4,
"nbformat_minor": 2
}

View File

@@ -1,5 +0,0 @@
# Copyright (c) Microsoft. All rights reserved.
# Licensed under the MIT license.
print("In train.py")
print("As a data scientist, this is where I use my training code.")

View File

@@ -1,5 +0,0 @@
# Copyright (c) Microsoft. All rights reserved.
# Licensed under the MIT license.
print("In train.py")
print("As a data scientist, this is where I use my training code.")

View File

@@ -0,0 +1,84 @@
Azure Synapse Analyticsis a limitless analytics service that brings together data integration, enterprise data warehousing, and big data analytics. It gives you the freedom to query data on your terms, using either serverless or dedicated resources—at scale. Azure Synapse brings these worlds together with a unified experience to ingest, explore, prepare, manage, and serve data for immediate BI and machine learning needs.A coreoffering within Azure Synapse Analyticsare serverlessApache Spark poolsenhanced for big data workloads.
Synapse in Aml integration is for customerswho want to useApacheSparkin AzureSynapse Analyticsto prepare data at scale in Azure ML before training their ML model. This will allow customers to work on their end-to-end ML lifecycle including large-scale data preparation, model training and deployment within Azure ML workspace without having to use suboptimal tools for machine learning or switch between multipletools for data preparation and model training.The ability to perform all ML tasks within Azure ML willreducetimerequired for customersto iterate on a machine learning project which typically includesmultiple rounds ofdata preparation and training.
In the public preview, the capabilities are provided:
- Link Azure Synapse Analytics workspace to Azure Machine Learning workspace (via ARM, UI or SDK)
- Attach Apache Spark pools powered by Azure Synapse Analytics as Azure Machine Learning compute targets (via ARM, UI or SDK)
- Launch Apache Spark sessions in notebooks and perform interactive data exploration and preparation. This interactive experience leverages Apache Spark magic and customers will have session-level Conda support to install packages.
- Productionize ML pipelines by leveraging Apache Spark pools to pre-process big data
# Using Synapse in Azure machine learning
## Create synapse resources
Follow up the documents to create Synapse workspace and resource-setup.sh is available for you to create the resources.
- Create from [Portal](https://docs.microsoft.com/en-us/azure/synapse-analytics/quickstart-create-workspace)
- Create from [Cli](https://docs.microsoft.com/en-us/azure/synapse-analytics/quickstart-create-workspace-cli)
Follow up the documents to create Synapse spark pool
- Create from [Portal](https://docs.microsoft.com/en-us/azure/synapse-analytics/quickstart-create-apache-spark-pool-portal)
- Create from [Cli](https://docs.microsoft.com/en-us/cli/azure/ext/synapse/synapse/spark/pool?view=azure-cli-latest)
## Link Synapse Workspace
Make sure you are the owner of synapse workspace so that you can link synapse workspace into AML.
You can run resource-setup.py to link the synapse workspace and attach compute
```python
from azureml.core import Workspace
ws = Workspace.from_config()
from azureml.core import LinkedService, SynapseWorkspaceLinkedServiceConfiguration
synapse_link_config = SynapseWorkspaceLinkedServiceConfiguration(
subscription_id="<subscription id>",
resource_group="<resource group",
name="<synapse workspace name>"
)
linked_service = LinkedService.register(
workspace=ws,
name='<link name>',
linked_service_config=synapse_link_config)
```
## Attach synapse spark pool as AzureML compute
```python
from azureml.core.compute import SynapseCompute, ComputeTarget
spark_pool_name = "<spark pool name>"
attached_synapse_name = "<attached compute name>"
attach_config = SynapseCompute.attach_configuration(
linked_service,
type="SynapseSpark",
pool_name=spark_pool_name)
synapse_compute=ComputeTarget.attach(
workspace=ws,
name=attached_synapse_name,
attach_configuration=attach_config)
synapse_compute.wait_for_completion()
```
## Set up permission
Grant Spark admin role to system assigned identity of the linked service so that the user can submit experiment run or pipeline run from AML workspace to synapse spark pool.
Grant Spark admin role to the specific user so that the user can start spark session to synapse spark pool.
You can get the system assigned identity information by running
```python
print(linked_service.system_assigned_identity_principal_id)
```
- Launch synapse studio of the synapse workspace and grant linked service MSI "Synapse Apache Spark administrator" role.
- In azure portal grant linked service MSI "Storage Blob Data Contributor" role of the primary adlsgen2 account of synapse workspace to use the library management feature.

View File

@@ -77,7 +77,7 @@
"source": [
"## Create trained model\n",
"\n",
"For this example, we will train a small model on scikit-learn's [diabetes dataset](https://scikit-learn.org/stable/datasets/index.html#diabetes-dataset). "
"For this example, we will train a small model on scikit-learn's [diabetes dataset](https://scikit-learn.org/stable/datasets/toy_dataset.html#diabetes-dataset). "
]
},
{
@@ -382,13 +382,111 @@
"source": [
"## Update Service\n",
"\n",
"If you want to change your model(s), Conda dependencies, or deployment configuration, call `update()` to rebuild the Docker image.\n",
"\n",
"```python\n",
"local_service.update(models=[SomeOtherModelObject],\n",
"If you want to change your model(s), Conda dependencies or deployment configuration, call `update()` to rebuild the Docker image.\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"local_service.update(models=[model],\n",
" inference_config=inference_config,\n",
" deployment_config=local_config)\n",
"```"
" deployment_config=deployment_config)\n"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Deploy model to AKS cluster based on the LocalWebservice's configuration."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# This is a one time setup for AKS Cluster. You can reuse this cluster for multiple deployments after it has been created. If you delete the cluster or the resource group that contains it, then you would have to recreate it.\n",
"from azureml.core.compute import AksCompute, ComputeTarget\n",
"from azureml.core.compute_target import ComputeTargetException\n",
"\n",
"# Choose a name for your AKS cluster\n",
"aks_name = 'my-aks-9' \n",
"\n",
"# Verify the cluster does not exist already\n",
"try:\n",
" aks_target = ComputeTarget(workspace=ws, name=aks_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" # Use the default configuration (can also provide parameters to customize)\n",
" prov_config = AksCompute.provisioning_configuration()\n",
"\n",
" # Create the cluster\n",
" aks_target = ComputeTarget.create(workspace = ws, \n",
" name = aks_name, \n",
" provisioning_configuration = prov_config)\n",
"\n",
"if aks_target.get_status() != \"Succeeded\":\n",
" aks_target.wait_for_completion(show_output=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.webservice import AksWebservice\n",
"# Set the web service configuration (using default here)\n",
"aks_config = AksWebservice.deploy_configuration()\n",
"\n",
"# # Enable token auth and disable (key) auth on the webservice\n",
"# aks_config = AksWebservice.deploy_configuration(token_auth_enabled=True, auth_enabled=False)\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"%%time\n",
"aks_service_name ='aks-service-1'\n",
"\n",
"aks_service = local_service.deploy_to_cloud(name=aks_service_name,\n",
" deployment_config=aks_config,\n",
" deployment_target=aks_target)\n",
"\n",
"aks_service.wait_for_deployment(show_output = True)\n",
"print(aks_service.state)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Test aks service\n",
"\n",
"sample_input = json.dumps({\n",
" 'data': dataset_x[0:2].tolist()\n",
"})\n",
"\n",
"aks_service.run(sample_input)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Delete the service if not needed.\n",
"aks_service.delete()"
]
},
{

View File

@@ -276,21 +276,24 @@
"metadata": {},
"outputs": [],
"source": [
"from azureml.exceptions import ComputeTargetException\n",
"from azureml.core.compute import ComputeTarget, AksCompute\n",
"from azureml.core.compute_target import ComputeTargetException\n",
"\n",
"aks_name = \"my-aks\"\n",
"aks_name = \"my-aks-insights\"\n",
"\n",
"creating_compute = False\n",
"try:\n",
" aks_target = ComputeTarget(ws, aks_name)\n",
" print(\"Using existing AKS cluster {}.\".format(aks_name))\n",
" print(\"Using existing AKS compute target {}.\".format(aks_name))\n",
"except ComputeTargetException:\n",
" print(\"Creating a new AKS cluster {}.\".format(aks_name))\n",
" print(\"Creating a new AKS compute target {}.\".format(aks_name))\n",
"\n",
" # Use the default configuration (can also provide parameters to customize).\n",
" prov_config = AksCompute.provisioning_configuration()\n",
" aks_target = ComputeTarget.create(workspace=ws,\n",
" name=aks_name,\n",
" provisioning_configuration=prov_config)"
" provisioning_configuration=prov_config)\n",
" creating_compute = True"
]
},
{
@@ -300,7 +303,7 @@
"outputs": [],
"source": [
"%%time\n",
"if aks_target.provisioning_state != \"Succeeded\":\n",
"if creating_compute and aks_target.provisioning_state != \"Succeeded\":\n",
" aks_target.wait_for_completion(show_output=True)"
]
},
@@ -380,7 +383,7 @@
" aks_service.wait_for_deployment(show_output=True)\n",
" print(aks_service.state)\n",
"else:\n",
" raise ValueError(\"AKS provisioning failed. Error: \", aks_service.error)"
" raise ValueError(\"AKS cluster provisioning failed. Error: \", aks_target.provisioning_errors)"
]
},
{
@@ -458,7 +461,9 @@
"%%time\n",
"aks_service.delete()\n",
"aci_service.delete()\n",
"model.delete()"
"model.delete()\n",
"if creating_compute:\n",
" aks_target.delete()"
]
}
],

View File

@@ -94,6 +94,17 @@ def main():
os.makedirs(output_dir, exist_ok=True)
kwargs = {'num_workers': 1, 'pin_memory': True} if use_cuda else {}
# Use Azure Open Datasets for MNIST dataset
datasets.MNIST.resources = [
("https://azureopendatastorage.azurefd.net/mnist/train-images-idx3-ubyte.gz",
"f68b3c2dcbeaaa9fbdd348bbdeb94873"),
("https://azureopendatastorage.azurefd.net/mnist/train-labels-idx1-ubyte.gz",
"d53e105ee54ea40749a09fcbcd1e9432"),
("https://azureopendatastorage.azurefd.net/mnist/t10k-images-idx3-ubyte.gz",
"9fb629c4189551a2d022fa330f9573f3"),
("https://azureopendatastorage.azurefd.net/mnist/t10k-labels-idx1-ubyte.gz",
"ec29112dd5afa0611ce80d1b7f02629c")
]
train_loader = torch.utils.data.DataLoader(
datasets.MNIST('data', train=True, download=True,
transform=transforms.Compose([transforms.ToTensor(),

View File

@@ -70,16 +70,16 @@
"\n",
"import urllib.request\n",
"\n",
"onnx_model_url = \"https://www.cntk.ai/OnnxModels/emotion_ferplus/opset_7/emotion_ferplus.tar.gz\"\n",
"onnx_model_url = \"https://github.com/onnx/models/blob/master/vision/body_analysis/emotion_ferplus/model/emotion-ferplus-7.tar.gz?raw=true\"\n",
"\n",
"urllib.request.urlretrieve(onnx_model_url, filename=\"emotion_ferplus.tar.gz\")\n",
"urllib.request.urlretrieve(onnx_model_url, filename=\"emotion-ferplus-7.tar.gz\")\n",
"\n",
"# the ! magic command tells our jupyter notebook kernel to run the following line of \n",
"# code from the command line instead of the notebook kernel\n",
"\n",
"# We use tar and xvcf to unzip the files we just retrieved from the ONNX model zoo\n",
"\n",
"!tar xvzf emotion_ferplus.tar.gz"
"!tar xvzf emotion-ferplus-7.tar.gz"
]
},
{
@@ -570,7 +570,7 @@
"metadata": {},
"outputs": [],
"source": [
"plt.figure(figsize = (16, 6), frameon=False)\n",
"plt.figure(figsize = (16, 6))\n",
"plt.subplot(1, 8, 1)\n",
"\n",
"plt.text(x = 0, y = -30, s = \"True Label: \", fontsize = 13, color = 'black')\n",

View File

@@ -70,9 +70,9 @@
"\n",
"import urllib.request\n",
"\n",
"onnx_model_url = \"https://www.cntk.ai/OnnxModels/mnist/opset_7/mnist.tar.gz\"\n",
"onnx_model_url = \"https://github.com/onnx/models/blob/master/vision/classification/mnist/model/mnist-7.tar.gz?raw=true\"\n",
"\n",
"urllib.request.urlretrieve(onnx_model_url, filename=\"mnist.tar.gz\")"
"urllib.request.urlretrieve(onnx_model_url, filename=\"mnist-7.tar.gz\")"
]
},
{
@@ -86,7 +86,7 @@
"\n",
"# We use tar and xvcf to unzip the files we just retrieved from the ONNX model zoo\n",
"\n",
"!tar xvzf mnist.tar.gz"
"!tar xvzf mnist-7.tar.gz"
]
},
{
@@ -521,7 +521,7 @@
"metadata": {},
"outputs": [],
"source": [
"plt.figure(figsize = (16, 6), frameon=False)\n",
"plt.figure(figsize = (16, 6))\n",
"plt.subplot(1, 8, 1)\n",
"\n",
"plt.text(x = 0, y = -30, s = \"True Label: \", fontsize = 13, color = 'black')\n",
@@ -684,18 +684,7 @@
"\n",
"A convolution layer is a set of filters. Each filter is defined by a weight (**W**) matrix, and bias ($b$).\n",
"\n",
"![](https://www.cntk.ai/jup/cntk103d_filterset_v2.png)\n",
"\n",
"These filters are scanned across the image performing the dot product between the weights and corresponding input value ($x$). The bias value is added to the output of the dot product and the resulting sum is optionally mapped through an activation function. This process is illustrated in the following animation."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"Image(url=\"https://www.cntk.ai/jup/cntk103d_conv2d_final.gif\", width= 200)"
"These filters are scanned across the image performing the dot product between the weights and corresponding input value ($x$). The bias value is added to the output of the dot product and the resulting sum is optionally mapped through an activation function."
]
},
{
@@ -707,24 +696,6 @@
"The MNIST model from the ONNX Model Zoo uses maxpooling to update the weights in its convolutions, summarized by the graphic below. You can see the entire workflow of our pre-trained model in the following image, with our input images and our output probabilities of each of our 10 labels. If you're interested in exploring the logic behind creating a Deep Learning model further, please look at the [training tutorial for our ONNX MNIST Convolutional Neural Network](https://github.com/Microsoft/CNTK/blob/master/Tutorials/CNTK_103D_MNIST_ConvolutionalNeuralNetwork.ipynb). "
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Max-Pooling for Convolutional Neural Nets\n",
"\n",
"![](http://www.cntk.ai/jup/c103d_max_pooling.gif)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Pre-Trained Model Architecture\n",
"\n",
"![](http://www.cntk.ai/jup/conv103d_mnist-conv-mp.png)"
]
},
{
"cell_type": "code",
"execution_count": null,

View File

@@ -226,7 +226,7 @@
"# Leaf domain label generates a name using the formula\n",
"# \"<leaf-domain-label>######.<azure-region>.cloudapp.azure.net\"\n",
"# where \"######\" is a random series of characters\n",
"provisioning_config.enable_ssl(leaf_domain_label = \"contoso\")\n",
"provisioning_config.enable_ssl(leaf_domain_label = \"contoso\", overwrite_existing_domain = True)\n",
"\n",
"aks_name = 'my-aks-ssl-1' \n",
"# Create the cluster\n",

View File

@@ -23,7 +23,7 @@
"# Train and explain models remotely via Azure Machine Learning Compute\n",
"\n",
"\n",
"_**This notebook showcases how to use the Azure Machine Learning Interpretability SDK to train and explain a regression model remotely on an Azure Machine Leanrning Compute Target (AMLCompute).**_\n",
"_**This notebook showcases how to use the Azure Machine Learning Interpretability SDK to train and explain a regression model remotely on an Azure Machine Learning Compute Target (AMLCompute).**_\n",
"\n",
"\n",
"\n",
@@ -35,10 +35,7 @@
" 1. Initialize a Workspace\n",
" 1. Create an Experiment\n",
" 1. Introduction to AmlCompute\n",
" 1. Submit an AmlCompute run in a few different ways\n",
" 1. Option 1: Provision as a run based compute target \n",
" 1. Option 2: Provision as a persistent compute target (Basic)\n",
" 1. Option 3: Provision as a persistent compute target (Advanced)\n",
" 1. Submit an AmlCompute run\n",
"1. Additional operations to perform on AmlCompute\n",
"1. [Download model explanations from Azure Machine Learning Run History](#Download)\n",
"1. [Visualize explanations](#Visualize)\n",
@@ -158,7 +155,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"## Submit an AmlCompute run in a few different ways\n",
"## Submit an AmlCompute run\n",
"\n",
"First lets check which VM families are available in your region. Azure is a regional service and some specialized SKUs (especially GPUs) are only available in certain regions. Since AmlCompute is created in the region of your workspace, we will use the supported_vms () function to see if the VM family we want to use ('STANDARD_D2_V2') is supported.\n",
"\n",
@@ -204,7 +201,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"### Option 1: Provision a compute target (Basic)\n",
"### Provision a compute target\n",
"\n",
"You can provision an AmlCompute resource by simply defining two parameters thanks to smart defaults. By default it autoscales from 0 nodes and provisions dedicated VMs to run your job in a container. This is useful when you want to continously re-use the same target, debug it between jobs or simply share the resource with other users of your workspace.\n",
"\n",
@@ -262,7 +259,7 @@
"run_config.environment.docker.enabled = True\n",
"\n",
"azureml_pip_packages = [\n",
" 'azureml-defaults', 'azureml-contrib-interpret', 'azureml-telemetry', 'azureml-interpret'\n",
" 'azureml-defaults', 'azureml-telemetry', 'azureml-interpret'\n",
"]\n",
"\n",
"# Note: this is to pin the scikit-learn and pandas versions to be same as notebook.\n",
@@ -327,183 +324,6 @@
"run.get_metrics()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Option 2: Provision a compute target (Advanced)\n",
"\n",
"You can also specify additional properties or change defaults while provisioning AmlCompute using a more advanced configuration. This is useful when you want a dedicated cluster of 4 nodes (for example you can set the min_nodes and max_nodes to 4), or want the compute to be within an existing VNet in your subscription.\n",
"\n",
"In addition to `vm_size` and `max_nodes`, you can specify:\n",
"* `min_nodes`: Minimum nodes (default 0 nodes) to downscale to while running a job on AmlCompute\n",
"* `vm_priority`: Choose between 'dedicated' (default) and 'lowpriority' VMs when provisioning AmlCompute. Low Priority VMs use Azure's excess capacity and are thus cheaper but risk your run being pre-empted\n",
"* `idle_seconds_before_scaledown`: Idle time (default 120 seconds) to wait after run completion before auto-scaling to min_nodes\n",
"* `vnet_resourcegroup_name`: Resource group of the **existing** VNet within which AmlCompute should be provisioned\n",
"* `vnet_name`: Name of VNet\n",
"* `subnet_name`: Name of SubNet within the VNet"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.compute import ComputeTarget, AmlCompute\n",
"from azureml.core.compute_target import ComputeTargetException\n",
"\n",
"# Choose a name for your CPU cluster\n",
"cpu_cluster_name = \"cpu-cluster\"\n",
"\n",
"# Verify that cluster does not exist already\n",
"try:\n",
" cpu_cluster = ComputeTarget(workspace=ws, name=cpu_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2',\n",
" vm_priority='lowpriority',\n",
" min_nodes=2,\n",
" max_nodes=4,\n",
" idle_seconds_before_scaledown='300',\n",
" vnet_resourcegroup_name='<my-resource-group>',\n",
" vnet_name='<my-vnet-name>',\n",
" subnet_name='<my-subnet-name>')\n",
" cpu_cluster = ComputeTarget.create(ws, cpu_cluster_name, compute_config)\n",
"\n",
"cpu_cluster.wait_for_completion(show_output=True)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Configure & Run"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.runconfig import RunConfiguration\n",
"from azureml.core.conda_dependencies import CondaDependencies\n",
"\n",
"# Create a new RunConfig object\n",
"run_config = RunConfiguration(framework=\"python\")\n",
"\n",
"# Set compute target to AmlCompute target created in previous step\n",
"run_config.target = cpu_cluster.name\n",
"\n",
"# Enable Docker \n",
"run_config.environment.docker.enabled = True\n",
"\n",
"azureml_pip_packages = [\n",
" 'azureml-defaults', 'azureml-contrib-interpret', 'azureml-telemetry', 'azureml-interpret'\n",
"]\n",
"\n",
"\n",
"\n",
"# Note: this is to pin the scikit-learn and pandas versions to be same as notebook.\n",
"# In production scenario user would choose their dependencies\n",
"import pkg_resources\n",
"available_packages = pkg_resources.working_set\n",
"sklearn_ver = None\n",
"pandas_ver = None\n",
"for dist in available_packages:\n",
" if dist.key == 'scikit-learn':\n",
" sklearn_ver = dist.version\n",
" elif dist.key == 'pandas':\n",
" pandas_ver = dist.version\n",
"sklearn_dep = 'scikit-learn'\n",
"pandas_dep = 'pandas'\n",
"if sklearn_ver:\n",
" sklearn_dep = 'scikit-learn=={}'.format(sklearn_ver)\n",
"if pandas_ver:\n",
" pandas_dep = 'pandas=={}'.format(pandas_ver)\n",
"# Specify CondaDependencies obj\n",
"# The CondaDependencies specifies the conda and pip packages that are installed in the environment\n",
"# the submitted job is run in. Note the remote environment(s) needs to be similar to the local\n",
"# environment, otherwise if a model is trained or deployed in a different environment this can\n",
"# cause errors. Please take extra care when specifying your dependencies in a production environment.\n",
"azureml_pip_packages.extend([sklearn_dep, pandas_dep])\n",
"run_config.environment.python.conda_dependencies = CondaDependencies.create(pip_packages=azureml_pip_packages)\n",
"\n",
"from azureml.core import Run\n",
"from azureml.core import ScriptRunConfig\n",
"\n",
"src = ScriptRunConfig(source_directory=project_folder, \n",
" script='train_explain.py', \n",
" run_config=run_config) \n",
"run = experiment.submit(config=src)\n",
"run"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"%%time\n",
"# Shows output of the run on stdout.\n",
"run.wait_for_completion(show_output=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"run.get_metrics()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Additional operations to perform on AmlCompute\n",
"\n",
"You can perform more operations on AmlCompute such as updating the node counts or deleting the compute. "
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Get_status () gets the latest status of the AmlCompute target\n",
"cpu_cluster.get_status().serialize()\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Update () takes in the min_nodes, max_nodes and idle_seconds_before_scaledown and updates the AmlCompute target\n",
"# cpu_cluster.update(min_nodes=1)\n",
"# cpu_cluster.update(max_nodes=10)\n",
"cpu_cluster.update(idle_seconds_before_scaledown=300)\n",
"# cpu_cluster.update(min_nodes=2, max_nodes=4, idle_seconds_before_scaledown=600)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Delete () is used to deprovision and delete the AmlCompute target. Useful if you want to re-use the compute name \n",
"# 'cpu-cluster' in this case but use a different VM family for instance.\n",
"\n",
"# cpu_cluster.delete()"
]
},
{
"cell_type": "markdown",
"metadata": {},
@@ -518,7 +338,7 @@
"metadata": {},
"outputs": [],
"source": [
"from azureml.contrib.interpret.explanation.explanation_client import ExplanationClient\n",
"from azureml.interpret import ExplanationClient\n",
"\n",
"# Get model explanation data\n",
"client = ExplanationClient.from_run(run)\n",

View File

@@ -3,9 +3,11 @@ dependencies:
- pip:
- azureml-sdk
- azureml-interpret
- interpret-community[visualization]
- flask
- flask-cors
- gevent>=1.3.6
- jinja2
- ipython
- matplotlib
- azureml-contrib-interpret
- sklearn-pandas<2.0.0
- azureml-dataset-runtime
- ipywidgets

View File

@@ -4,7 +4,7 @@
from sklearn import datasets
from sklearn.linear_model import Ridge
from interpret.ext.blackbox import TabularExplainer
from azureml.contrib.interpret.explanation.explanation_client import ExplanationClient
from azureml.interpret import ExplanationClient
from sklearn.model_selection import train_test_split
from azureml.core.run import Run
import joblib

View File

@@ -57,7 +57,7 @@
"Problem: IBM employee attrition classification with scikit-learn (run model explainer locally and upload explanation to the Azure Machine Learning Run History)\n",
"\n",
"1. Train a SVM classification model using Scikit-learn\n",
"2. Run 'explain_model' with AML Run History, which leverages run history service to store and manage the explanation data\n",
"2. Run 'explain-model-sample' with AML Run History, which leverages run history service to store and manage the explanation data\n",
"---\n",
"\n",
"Setup: If you are using Jupyter notebooks, the extensions should be installed automatically with the package.\n",
@@ -226,36 +226,6 @@
" ('classifier', SVC(C=1.0, probability=True))])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"'''\n",
"# Uncomment below if sklearn-pandas is not installed\n",
"#!pip install sklearn-pandas\n",
"from sklearn_pandas import DataFrameMapper\n",
"\n",
"# Impute, standardize the numeric features and one-hot encode the categorical features. \n",
"\n",
"\n",
"numeric_transformations = [([f], Pipeline(steps=[('imputer', SimpleImputer(strategy='median')), ('scaler', StandardScaler())])) for f in numerical]\n",
"\n",
"categorical_transformations = [([f], OneHotEncoder(handle_unknown='ignore', sparse=False)) for f in categorical]\n",
"\n",
"transformations = numeric_transformations + categorical_transformations\n",
"\n",
"# Append classifier to preprocessing pipeline.\n",
"# Now we have a full prediction pipeline.\n",
"clf = Pipeline(steps=[('preprocessor', transformations),\n",
" ('classifier', SVC(C=1.0, probability=True))]) \n",
"\n",
"\n",
"\n",
"'''"
]
},
{
"cell_type": "markdown",
"metadata": {},
@@ -451,7 +421,7 @@
"source": [
"import azureml.core\n",
"from azureml.core import Workspace, Experiment\n",
"from azureml.contrib.interpret.explanation.explanation_client import ExplanationClient\n",
"from azureml.interpret import ExplanationClient\n",
"# Check core SDK version number\n",
"print(\"SDK version:\", azureml.core.VERSION)"
]
@@ -475,7 +445,7 @@
"metadata": {},
"outputs": [],
"source": [
"experiment_name = 'explain_model'\n",
"experiment_name = 'explain-model-sample'\n",
"experiment = Experiment(ws, experiment_name)\n",
"run = experiment.start_logging()\n",
"client = ExplanationClient.from_run(run)"

View File

@@ -3,7 +3,10 @@ dependencies:
- pip:
- azureml-sdk
- azureml-interpret
- interpret-community[visualization]
- flask
- flask-cors
- gevent>=1.3.6
- jinja2
- ipython
- matplotlib
- azureml-contrib-interpret
- ipywidgets

View File

@@ -166,12 +166,12 @@
"source": [
"from sklearn.model_selection import train_test_split\n",
"import joblib\n",
"from sklearn.compose import ColumnTransformer\n",
"from sklearn.preprocessing import StandardScaler, OneHotEncoder\n",
"from sklearn.impute import SimpleImputer\n",
"from sklearn.pipeline import Pipeline\n",
"from sklearn.linear_model import LogisticRegression\n",
"from sklearn.ensemble import RandomForestClassifier\n",
"from sklearn_pandas import DataFrameMapper\n",
"\n",
"from interpret.ext.blackbox import TabularExplainer\n",
"\n",
@@ -201,17 +201,23 @@
"# Store the numerical columns in a list numerical\n",
"numerical = attritionXData.columns.difference(categorical)\n",
"\n",
"numeric_transformations = [([f], Pipeline(steps=[\n",
"# We create the preprocessing pipelines for both numeric and categorical data.\n",
"numeric_transformer = Pipeline(steps=[\n",
" ('imputer', SimpleImputer(strategy='median')),\n",
" ('scaler', StandardScaler())])) for f in numerical]\n",
" ('scaler', StandardScaler())])\n",
"\n",
"categorical_transformations = [([f], OneHotEncoder(handle_unknown='ignore', sparse=False)) for f in categorical]\n",
"categorical_transformer = Pipeline(steps=[\n",
" ('imputer', SimpleImputer(strategy='constant', fill_value='missing')),\n",
" ('onehot', OneHotEncoder(handle_unknown='ignore'))])\n",
"\n",
"transformations = numeric_transformations + categorical_transformations\n",
"transformations = ColumnTransformer(\n",
" transformers=[\n",
" ('num', numeric_transformer, numerical),\n",
" ('cat', categorical_transformer, categorical)])\n",
"\n",
"# Append classifier to preprocessing pipeline.\n",
"# Now we have a full prediction pipeline.\n",
"clf = Pipeline(steps=[('preprocessor', DataFrameMapper(transformations)),\n",
"clf = Pipeline(steps=[('preprocessor', transformations),\n",
" ('classifier', RandomForestClassifier())])\n",
"\n",
"# Split data into train and test\n",
@@ -323,7 +329,7 @@
"\n",
"# azureml-defaults is required to host the model as a web service.\n",
"azureml_pip_packages = [\n",
" 'azureml-defaults', 'azureml-contrib-interpret', 'azureml-core', 'azureml-telemetry',\n",
" 'azureml-defaults', 'azureml-core', 'azureml-telemetry',\n",
" 'azureml-interpret'\n",
"]\n",
" \n",
@@ -350,7 +356,7 @@
"# the submitted job is run in. Note the remote environment(s) needs to be similar to the local\n",
"# environment, otherwise if a model is trained or deployed in a different environment this can\n",
"# cause errors. Please take extra care when specifying your dependencies in a production environment.\n",
"myenv = CondaDependencies.create(pip_packages=['sklearn-pandas', 'pyyaml', sklearn_dep, pandas_dep] + azureml_pip_packages,\n",
"myenv = CondaDependencies.create(pip_packages=['pyyaml', sklearn_dep, pandas_dep] + azureml_pip_packages,\n",
" pin_sdk_version=False)\n",
"\n",
"with open(\"myenv.yml\",\"w\") as f:\n",

View File

@@ -3,8 +3,10 @@ dependencies:
- pip:
- azureml-sdk
- azureml-interpret
- interpret-community[visualization]
- flask
- flask-cors
- gevent>=1.3.6
- jinja2
- ipython
- matplotlib
- azureml-contrib-interpret
- sklearn-pandas<2.0.0
- ipywidgets

View File

@@ -267,7 +267,7 @@
"run_config.environment.python.user_managed_dependencies = False\n",
"\n",
"azureml_pip_packages = [\n",
" 'azureml-defaults', 'azureml-contrib-interpret', 'azureml-telemetry', 'azureml-interpret'\n",
" 'azureml-defaults', 'azureml-telemetry', 'azureml-interpret'\n",
"]\n",
" \n",
"\n",
@@ -294,9 +294,8 @@
"# the submitted job is run in. Note the remote environment(s) needs to be similar to the local\n",
"# environment, otherwise if a model is trained or deployed in a different environment this can\n",
"# cause errors. Please take extra care when specifying your dependencies in a production environment.\n",
"azureml_pip_packages.extend(['sklearn-pandas', 'pyyaml', sklearn_dep, pandas_dep])\n",
"run_config.environment.python.conda_dependencies = CondaDependencies.create(pip_packages=azureml_pip_packages,\n",
" pin_sdk_version=False)\n",
"azureml_pip_packages.extend(['pyyaml', sklearn_dep, pandas_dep])\n",
"run_config.environment.python.conda_dependencies = CondaDependencies.create(pip_packages=azureml_pip_packages)\n",
"# Now submit a run on AmlCompute\n",
"from azureml.core.script_run_config import ScriptRunConfig\n",
"\n",
@@ -368,7 +367,7 @@
"outputs": [],
"source": [
"# Retrieve global explanation for visualization\n",
"from azureml.contrib.interpret.explanation.explanation_client import ExplanationClient\n",
"from azureml.interpret import ExplanationClient\n",
"\n",
"# get model explanation data\n",
"client = ExplanationClient.from_run(run)\n",
@@ -432,7 +431,7 @@
"\n",
"# WARNING: to install this, g++ needs to be available on the Docker image and is not by default (look at the next cell)\n",
"azureml_pip_packages = [\n",
" 'azureml-defaults', 'azureml-contrib-interpret', 'azureml-core', 'azureml-telemetry',\n",
" 'azureml-defaults', 'azureml-core', 'azureml-telemetry',\n",
" 'azureml-interpret'\n",
"]\n",
" \n",
@@ -459,9 +458,8 @@
"# the submitted job is run in. Note the remote environment(s) needs to be similar to the local\n",
"# environment, otherwise if a model is trained or deployed in a different environment this can\n",
"# cause errors. Please take extra care when specifying your dependencies in a production environment.\n",
"azureml_pip_packages.extend(['sklearn-pandas', 'pyyaml', sklearn_dep, pandas_dep])\n",
"myenv = CondaDependencies.create(pip_packages=azureml_pip_packages,\n",
" pin_sdk_version=False)\n",
"azureml_pip_packages.extend(['pyyaml', sklearn_dep, pandas_dep])\n",
"myenv = CondaDependencies.create(pip_packages=azureml_pip_packages)\n",
"\n",
"with open(\"myenv.yml\",\"w\") as f:\n",
" f.write(myenv.serialize_to_string())\n",

View File

@@ -3,10 +3,12 @@ dependencies:
- pip:
- azureml-sdk
- azureml-interpret
- interpret-community[visualization]
- flask
- flask-cors
- gevent>=1.3.6
- jinja2
- ipython
- matplotlib
- azureml-contrib-interpret
- sklearn-pandas<2.0.0
- azureml-dataset-runtime
- azureml-core
- ipywidgets

View File

@@ -5,17 +5,17 @@
import os
import pandas as pd
import zipfile
from sklearn.model_selection import train_test_split
import joblib
from sklearn.compose import ColumnTransformer
from sklearn.model_selection import train_test_split
from sklearn.preprocessing import StandardScaler, OneHotEncoder
from sklearn.impute import SimpleImputer
from sklearn.pipeline import Pipeline
from sklearn.linear_model import LogisticRegression
from sklearn_pandas import DataFrameMapper
from azureml.core.run import Run
from interpret.ext.blackbox import TabularExplainer
from azureml.contrib.interpret.explanation.explanation_client import ExplanationClient
from azureml.interpret import ExplanationClient
from azureml.interpret.scoring.scoring_explainer import LinearScoringExplainer, save
OUTPUT_DIR = './outputs/'
@@ -57,16 +57,22 @@ for col, value in attritionXData.iteritems():
# store the numerical columns
numerical = attritionXData.columns.difference(categorical)
numeric_transformations = [([f], Pipeline(steps=[
# We create the preprocessing pipelines for both numeric and categorical data.
numeric_transformer = Pipeline(steps=[
('imputer', SimpleImputer(strategy='median')),
('scaler', StandardScaler())])) for f in numerical]
('scaler', StandardScaler())])
categorical_transformations = [([f], OneHotEncoder(handle_unknown='ignore', sparse=False)) for f in categorical]
categorical_transformer = Pipeline(steps=[
('imputer', SimpleImputer(strategy='constant', fill_value='missing')),
('onehot', OneHotEncoder(handle_unknown='ignore'))])
transformations = numeric_transformations + categorical_transformations
transformations = ColumnTransformer(
transformers=[
('num', numeric_transformer, numerical),
('cat', categorical_transformer, categorical)])
# append classifier to preprocessing pipeline
clf = Pipeline(steps=[('preprocessor', DataFrameMapper(transformations)),
clf = Pipeline(steps=[('preprocessor', transformations),
('classifier', LogisticRegression(solver='lbfgs'))])
# get the run this was submitted from to interact with run history

View File

@@ -9,7 +9,7 @@ These notebooks below are designed to go in sequence.
4. [aml-pipelines-data-transfer.ipynb](https://aka.ms/pl-data-trans): This notebook shows how you transfer data between supported datastores.
5. [aml-pipelines-use-databricks-as-compute-target.ipynb](https://aka.ms/pl-databricks): This notebooks shows how you can use Pipelines to send your compute payload to Azure Databricks.
6. [aml-pipelines-use-adla-as-compute-target.ipynb](https://aka.ms/pl-adla): This notebook shows how you can use Azure Data Lake Analytics (ADLA) as a compute target.
7. [aml-pipelines-how-to-use-estimatorstep.ipynb](https://aka.ms/pl-estimator): This notebook shows how to use the EstimatorStep.
7. [aml-pipelines-with-commandstep.ipynb](aml-pipelines-with-commandstep.ipynb): This notebook shows how to use the CommandStep.
8. [aml-pipelines-parameter-tuning-with-hyperdrive.ipynb](https://aka.ms/pl-hyperdrive): HyperDriveStep in Pipelines shows how you can do hyper parameter tuning using Pipelines.
9. [aml-pipelines-how-to-use-azurebatch-to-run-a-windows-executable.ipynb](https://aka.ms/pl-azbatch): AzureBatchStep can be used to run your custom code in AzureBatch cluster.
10. [aml-pipelines-setup-schedule-for-a-published-pipeline.ipynb](https://aka.ms/pl-schedule): Once you publish a Pipeline, you can schedule it to trigger based on an interval or on data change in a defined datastore.
@@ -19,5 +19,6 @@ These notebooks below are designed to go in sequence.
14. [aml-pipelines-how-to-use-pipeline-drafts.ipynb](http://aka.ms/pl-pl-draft): This notebook shows how to use Pipeline Drafts. Pipeline Drafts are mutable pipelines which can be used to submit runs and create Published Pipelines.
15. [aml-pipelines-hot-to-use-modulestep.ipynb](https://aka.ms/pl-modulestep): This notebook shows how to define Module, ModuleVersion and how to use them in an AML Pipeline using ModuleStep.
16. [aml-pipelines-with-notebook-runner-step.ipynb](https://aka.ms/pl-nbrstep): This notebook shows how you can run another notebook as a step in Azure Machine Learning Pipeline.
17. [aml-pipelines-with-commandstep-r.ipynb](aml-pipelines-with-commandstep-r.ipynb): This notebook shows how to use CommandStep to run R scripts.
![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/machine-learning-pipelines/intro-to-pipelines/README.png)

View File

@@ -22,6 +22,8 @@
"# Azure Machine Learning Pipeline with DataTransferStep\n",
"This notebook is used to demonstrate the use of DataTransferStep in an Azure Machine Learning Pipeline.\n",
"\n",
"> **Note:** In Azure Machine Learning, you can write output data directly to Azure Blob Storage, Azure Data Lake Storage Gen 1, Azure Data Lake Storage Gen 2, Azure FileShare without going through extra DataTransferStep. Learn how to use [OutputFileDatasetConfig](https://docs.microsoft.com/python/api/azureml-core/azureml.data.output_dataset_config.outputfiledatasetconfig?view=azure-ml-py) to achieve that with sample notebooks [here](https://aka.ms/pipeline-with-dataset).**\n",
"\n",
"In certain cases, you will need to transfer data from one data location to another. For example, your data may be in Azure SQL Database and you may want to move it to Azure Data Lake storage. Or, your data is in an ADLS account and you want to make it available in the Blob storage. The built-in **DataTransferStep** class helps you transfer data in these situations.\n",
"\n",
"The below examples show how to move data between different storage types supported in Azure Machine Learning.\n",

View File

@@ -341,7 +341,7 @@
"outputs": [],
"source": [
"pipeline = Pipeline(workspace=ws, steps=[step])\n",
"pipeline_run = Experiment(ws, 'azurebatch_experiment').submit(pipeline)"
"pipeline_run = Experiment(ws, 'azurebatch_sample').submit(pipeline)"
]
},
{

View File

@@ -130,7 +130,7 @@
"\n",
"pipeline_draft = PipelineDraft.create(ws, name=\"TestPipelineDraft\",\n",
" description=\"draft description\",\n",
" experiment_name=\"helloworld\",\n",
" experiment_name=\"pipeline_draft_sample\",\n",
" pipeline=pipeline,\n",
" continue_on_step_failure=True,\n",
" tags={'dev': 'true'},\n",

View File

@@ -44,9 +44,11 @@
"import azureml.core\n",
"from azureml.core import Workspace, Experiment, Datastore, Dataset\n",
"from azureml.core.compute import ComputeTarget, AmlCompute\n",
"from azureml.core.conda_dependencies import CondaDependencies\n",
"from azureml.core.runconfig import RunConfiguration\n",
"from azureml.exceptions import ComputeTargetException\n",
"from azureml.pipeline.steps import HyperDriveStep, HyperDriveStepRun\n",
"from azureml.pipeline.core import Pipeline, PipelineData\n",
"from azureml.pipeline.steps import HyperDriveStep, HyperDriveStepRun, PythonScriptStep\n",
"from azureml.pipeline.core import Pipeline, PipelineData, TrainingOutput\n",
"from azureml.train.dnn import TensorFlow\n",
"# from azureml.train.hyperdrive import *\n",
"from azureml.train.hyperdrive import RandomParameterSampling, BanditPolicy, HyperDriveConfig, PrimaryMetricGoal\n",
@@ -119,12 +121,17 @@
"metadata": {},
"outputs": [],
"source": [
"os.makedirs('./data/mnist', exist_ok=True)\n",
"data_folder = os.path.join(os.getcwd(), 'data/mnist')\n",
"os.makedirs(data_folder, exist_ok=True)\n",
"\n",
"urllib.request.urlretrieve('http://yann.lecun.com/exdb/mnist/train-images-idx3-ubyte.gz', filename = './data/mnist/train-images.gz')\n",
"urllib.request.urlretrieve('http://yann.lecun.com/exdb/mnist/train-labels-idx1-ubyte.gz', filename = './data/mnist/train-labels.gz')\n",
"urllib.request.urlretrieve('http://yann.lecun.com/exdb/mnist/t10k-images-idx3-ubyte.gz', filename = './data/mnist/test-images.gz')\n",
"urllib.request.urlretrieve('http://yann.lecun.com/exdb/mnist/t10k-labels-idx1-ubyte.gz', filename = './data/mnist/test-labels.gz')"
"urllib.request.urlretrieve('https://azureopendatastorage.blob.core.windows.net/mnist/train-images-idx3-ubyte.gz',\n",
" filename=os.path.join(data_folder, 'train-images-idx3-ubyte.gz'))\n",
"urllib.request.urlretrieve('https://azureopendatastorage.blob.core.windows.net/mnist/train-labels-idx1-ubyte.gz',\n",
" filename=os.path.join(data_folder, 'train-labels-idx1-ubyte.gz'))\n",
"urllib.request.urlretrieve('https://azureopendatastorage.blob.core.windows.net/mnist/t10k-images-idx3-ubyte.gz',\n",
" filename=os.path.join(data_folder, 't10k-images-idx3-ubyte.gz'))\n",
"urllib.request.urlretrieve('https://azureopendatastorage.blob.core.windows.net/mnist/t10k-labels-idx1-ubyte.gz',\n",
" filename=os.path.join(data_folder, 't10k-labels-idx1-ubyte.gz'))"
]
},
{
@@ -144,11 +151,11 @@
"from utils import load_data\n",
"\n",
"# note we also shrink the intensity values (X) from 0-255 to 0-1. This helps the neural network converge faster.\n",
"X_train = load_data('./data/mnist/train-images.gz', False) / 255.0\n",
"y_train = load_data('./data/mnist/train-labels.gz', True).reshape(-1)\n",
"X_train = load_data(os.path.join(data_folder, 'train-images-idx3-ubyte.gz'), False) / np.float32(255.0)\n",
"X_test = load_data(os.path.join(data_folder, 't10k-images-idx3-ubyte.gz'), False) / np.float32(255.0)\n",
"y_train = load_data(os.path.join(data_folder, 'train-labels-idx1-ubyte.gz'), True).reshape(-1)\n",
"y_test = load_data(os.path.join(data_folder, 't10k-labels-idx1-ubyte.gz'), True).reshape(-1)\n",
"\n",
"X_test = load_data('./data/mnist/test-images.gz', False) / 255.0\n",
"y_test = load_data('./data/mnist/test-labels.gz', True).reshape(-1)\n",
"\n",
"count = 0\n",
"sample_size = 30\n",
@@ -232,7 +239,22 @@
" compute_target = ComputeTarget.create(ws, cluster_name, compute_config)\n",
"compute_target.wait_for_completion(show_output=True, timeout_in_minutes=20)\n",
"\n",
"print(\"Azure Machine Learning Compute attached\")"
"print(\"Azure Machine Learning Compute attached\")\n",
"\n",
"cpu_cluster_name = \"cpu-cluster\"\n",
"\n",
"try:\n",
" cpu_cluster = ComputeTarget(workspace=ws, name=cpu_cluster_name)\n",
" print(\"Found existing cpu-cluster\")\n",
"except ComputeTargetException:\n",
" print(\"Creating new cpu-cluster\")\n",
" \n",
" compute_config = AmlCompute.provisioning_configuration(vm_size=\"STANDARD_D2_V2\",\n",
" min_nodes=0,\n",
" max_nodes=4)\n",
" cpu_cluster = ComputeTarget.create(ws, cpu_cluster_name, compute_config)\n",
" \n",
"cpu_cluster.wait_for_completion(show_output=True)"
]
},
{
@@ -401,7 +423,15 @@
"metrics_output_name = 'metrics_output'\n",
"metrics_data = PipelineData(name='metrics_data',\n",
" datastore=datastore,\n",
" pipeline_output_name=metrics_output_name)\n",
" pipeline_output_name=metrics_output_name,\n",
" training_output=TrainingOutput(\"Metrics\"))\n",
"\n",
"model_output_name = 'model_output'\n",
"saved_model = PipelineData(name='saved_model',\n",
" datastore=datastore,\n",
" pipeline_output_name=model_output_name,\n",
" training_output=TrainingOutput(\"Model\",\n",
" model_file=\"outputs/model/saved_model.pb\"))\n",
"\n",
"hd_step_name='hd_step01'\n",
"hd_step = HyperDriveStep(\n",
@@ -409,7 +439,39 @@
" hyperdrive_config=hd_config,\n",
" estimator_entry_script_arguments=['--data-folder', data_folder],\n",
" inputs=[data_folder],\n",
" metrics_output=metrics_data)"
" outputs=[metrics_data, saved_model])"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Find and register best model\n",
"When all the jobs finish, we can choose to register the model that has the highest accuracy through an additional PythonScriptStep.\n",
"\n",
"Through this additional register_model_step, we register the chosen files as a model named `tf-dnn-mnist` under the workspace for deployment."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"conda_dep = CondaDependencies()\n",
"conda_dep.add_pip_package(\"azureml-sdk\")\n",
"\n",
"rcfg = RunConfiguration(conda_dependencies=conda_dep)\n",
"\n",
"register_model_step = PythonScriptStep(script_name='register_model.py',\n",
" name=\"register_model_step01\",\n",
" inputs=[saved_model],\n",
" compute_target=cpu_cluster,\n",
" arguments=[\"--saved-model\", saved_model],\n",
" allow_reuse=True,\n",
" runconfig=rcfg)\n",
"\n",
"register_model_step.run_after(hd_step)"
]
},
{
@@ -425,7 +487,7 @@
"metadata": {},
"outputs": [],
"source": [
"pipeline = Pipeline(workspace=ws, steps=[hd_step])\n",
"pipeline = Pipeline(workspace=ws, steps=[hd_step, register_model_step])\n",
"pipeline_run = exp.submit(pipeline)"
]
},
@@ -500,58 +562,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"## Find and register best model\n",
"When all the jobs finish, we can find out the one that has the highest accuracy."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"hd_step_run = HyperDriveStepRun(step_run=pipeline_run.find_step_run(hd_step_name)[0])\n",
"best_run = hd_step_run.get_best_run_by_primary_metric()\n",
"best_run"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now let's list the model files uploaded during the run."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"print(best_run.get_file_names())"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We can then register the folder (and all files in it) as a model named `tf-dnn-mnist` under the workspace for deployment."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"model = best_run.register_model(model_name='tf-dnn-mnist', model_path='outputs/model')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"For model deployment, please refer to [Training, hyperparameter tune, and deploy with TensorFlow](https://github.com/Azure/MachineLearningNotebooks/blob/master/how-to-use-azureml/ml-frameworks/tensorflow/deployment/train-hyperparameter-tune-deploy-with-tensorflow/train-hyperparameter-tune-deploy-with-tensorflow.ipynb)."
"For model deployment, please refer to [Training, hyperparameter tune, and deploy with TensorFlow](https://github.com/Azure/MachineLearningNotebooks/blob/master/how-to-use-azureml/ml-frameworks/tensorflow/train-hyperparameter-tune-deploy-with-tensorflow/train-hyperparameter-tune-deploy-with-tensorflow.ipynb)."
]
}
],

View File

@@ -41,14 +41,14 @@
"source": [
"import azureml.core\n",
"from azureml.core import Workspace, Datastore, Experiment, Dataset\n",
"from azureml.data import OutputFileDatasetConfig\n",
"from azureml.core.compute import AmlCompute\n",
"from azureml.core.compute import ComputeTarget\n",
"\n",
"# Check core SDK version number\n",
"print(\"SDK version:\", azureml.core.VERSION)\n",
"\n",
"from azureml.data.data_reference import DataReference\n",
"from azureml.pipeline.core import Pipeline, PipelineData\n",
"from azureml.pipeline.core import Pipeline\n",
"from azureml.pipeline.steps import PythonScriptStep\n",
"from azureml.pipeline.core.graph import PipelineParameter\n",
"\n",
@@ -140,9 +140,9 @@
"metadata": {},
"outputs": [],
"source": [
"# Define intermediate data using PipelineData\n",
"processed_data1 = PipelineData(\"processed_data1\",datastore=def_blob_store)\n",
"print(\"PipelineData object created\")"
"# Define intermediate data using OutputFileDatasetConfig\n",
"processed_data1 = OutputFileDatasetConfig(name=\"processed_data1\")\n",
"print(\"Output dataset object created\")"
]
},
{
@@ -170,9 +170,7 @@
"\n",
"trainStep = PythonScriptStep(\n",
" script_name=\"train.py\", \n",
" arguments=[\"--input_data\", blob_input_data, \"--output_train\", processed_data1],\n",
" inputs=[blob_input_data],\n",
" outputs=[processed_data1],\n",
" arguments=[\"--input_data\", blob_input_data.as_mount(), \"--output_train\", processed_data1],\n",
" compute_target=aml_compute, \n",
" source_directory=source_directory\n",
")\n",
@@ -195,16 +193,14 @@
"metadata": {},
"outputs": [],
"source": [
"# extractStep to use the intermediate data produced by step4\n",
"# extractStep to use the intermediate data produced by trainStep\n",
"# This step also produces an output processed_data2\n",
"processed_data2 = PipelineData(\"processed_data2\", datastore=def_blob_store)\n",
"processed_data2 = OutputFileDatasetConfig(name=\"processed_data2\")\n",
"source_directory = \"publish_run_extract\"\n",
"\n",
"extractStep = PythonScriptStep(\n",
" script_name=\"extract.py\",\n",
" arguments=[\"--input_extract\", processed_data1, \"--output_extract\", processed_data2],\n",
" inputs=[processed_data1],\n",
" outputs=[processed_data2],\n",
" arguments=[\"--input_extract\", processed_data1.as_input(), \"--output_extract\", processed_data2],\n",
" compute_target=aml_compute, \n",
" source_directory=source_directory)\n",
"print(\"extractStep created\")"
@@ -256,15 +252,17 @@
"metadata": {},
"outputs": [],
"source": [
"# Now define step6 that takes two inputs (both intermediate data), and produce an output\n",
"processed_data3 = PipelineData(\"processed_data3\", datastore=def_blob_store)\n",
"# Now define compareStep that takes two inputs (both intermediate data), and produce an output\n",
"processed_data3 = OutputFileDatasetConfig(name=\"processed_data3\")\n",
"\n",
"# You can register the output as dataset after job completion\n",
"processed_data3 = processed_data3.register_on_complete(\"compare_result\")\n",
"\n",
"source_directory = \"publish_run_compare\"\n",
"\n",
"compareStep = PythonScriptStep(\n",
" script_name=\"compare.py\",\n",
" arguments=[\"--compare_data1\", processed_data1, \"--compare_data2\", processed_data2, \"--output_compare\", processed_data3, \"--pipeline_param\", pipeline_param],\n",
" inputs=[processed_data1, processed_data2],\n",
" outputs=[processed_data3], \n",
" arguments=[\"--compare_data1\", processed_data1.as_input(), \"--compare_data2\", processed_data2.as_input(), \"--output_compare\", processed_data3, \"--pipeline_param\", pipeline_param], \n",
" compute_target=aml_compute, \n",
" source_directory=source_directory)\n",
"print(\"compareStep created\")"
@@ -327,7 +325,7 @@
"outputs": [],
"source": [
"# submit a pipeline run\n",
"pipeline_run1 = Experiment(ws, 'Pipeline_experiment').submit(pipeline1)\n",
"pipeline_run1 = Experiment(ws, 'Pipeline_experiment_sample').submit(pipeline1)\n",
"# publish a pipeline from the submitted pipeline run\n",
"published_pipeline2 = pipeline_run1.publish_pipeline(name=\"My_New_Pipeline2\", description=\"My Published Pipeline Description\", version=\"0.1\", continue_on_step_failure=True)\n",
"published_pipeline2"

View File

@@ -19,8 +19,8 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"# How to Setup a Schedule for a Published Pipeline\n",
"In this notebook, we will show you how you can run an already published pipeline on a schedule."
"# How to Setup a Schedule for a Published Pipeline or Pipeline Endpoint\n",
"In this notebook, we will show you how you can run an already published pipeline or a pipeline endpoint on a schedule."
]
},
{
@@ -159,6 +159,43 @@
"print(\"Newly published pipeline id: {}\".format(published_pipeline1.id))"
]
},
{
"cell_type": "markdown",
"metadata": {
"nteract": {
"transient": {
"deleting": false
}
}
},
"source": [
"### Create a Pipeline Endpoint\n",
"Alternatively, you can create a schedule to run a pipeline endpoint instead of a published pipeline. You will need this to create a schedule against a pipeline endpoint in the last section of this notebook. "
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"jupyter": {
"outputs_hidden": false,
"source_hidden": false
},
"nteract": {
"transient": {
"deleting": false
}
}
},
"outputs": [],
"source": [
"from azureml.pipeline.core import PipelineEndpoint\n",
"\n",
"pipeline_endpoint = PipelineEndpoint.publish(workspace=ws, name=\"ScheduledPipelineEndpoint\",\n",
" pipeline=pipeline1, description=\"Publish pipeline endpoint for schedule test\")\n",
"pipeline_endpoint"
]
},
{
"cell_type": "markdown",
"metadata": {},
@@ -196,14 +233,24 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"### Create a schedule for the pipeline using a recurrence\n",
"### Create a schedule for the published pipeline using a recurrence\n",
"This schedule will run on a specified recurrence interval."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"jupyter": {
"outputs_hidden": false,
"source_hidden": false
},
"nteract": {
"transient": {
"deleting": false
}
}
},
"outputs": [],
"source": [
"from azureml.pipeline.core.schedule import ScheduleRecurrence, Schedule\n",
@@ -212,7 +259,7 @@
"\n",
"schedule = Schedule.create(workspace=ws, name=\"My_Schedule\",\n",
" pipeline_id=pub_pipeline_id, \n",
" experiment_name='Schedule_Run',\n",
" experiment_name='Schedule-run-sample',\n",
" recurrence=recurrence,\n",
" wait_for_provisioning=True,\n",
" description=\"Schedule Run\")\n",
@@ -308,7 +355,11 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"gather": {
"logged": 1606157800044
}
},
"outputs": [],
"source": [
"# Set the wait_for_provisioning flag to False if you do not want to wait \n",
@@ -394,7 +445,7 @@
"\n",
"schedule = Schedule.create(workspace=ws, name=\"My_Schedule\",\n",
" pipeline_id=pub_pipeline_id, \n",
" experiment_name='Schedule_Run',\n",
" experiment_name='Schedule-run-sample',\n",
" datastore=datastore,\n",
" wait_for_provisioning=True,\n",
" description=\"Schedule Run\")\n",
@@ -410,7 +461,11 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"gather": {
"logged": 1606157862620
}
},
"outputs": [],
"source": [
"# Set the wait_for_provisioning flag to False if you do not want to wait \n",
@@ -419,14 +474,151 @@
"schedule = Schedule.get(ws, schedule_id)\n",
"print(\"Disabled schedule {}. New status is: {}\".format(schedule.id, schedule.status))"
]
},
{
"cell_type": "markdown",
"metadata": {
"nteract": {
"transient": {
"deleting": false
}
}
},
"source": [
"### Create a schedule for a pipeline endpoint\n",
"Alternative to creating schedules for a published pipeline, you can also create schedules to run pipeline endpoints.\n",
"Retrieve the pipeline endpoint id to create a schedule. "
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"gather": {
"logged": 1606157888851
},
"jupyter": {
"outputs_hidden": false,
"source_hidden": false
},
"nteract": {
"transient": {
"deleting": false
}
}
},
"outputs": [],
"source": [
"pipeline_endpoint_by_name = PipelineEndpoint.get(workspace=ws, name=\"ScheduledPipelineEndpoint\")\n",
"published_pipeline_endpoint_id = pipeline_endpoint_by_name.id\n",
"\n",
"recurrence = ScheduleRecurrence(frequency=\"Day\", interval=2, hours=[22], minutes=[30]) # Runs every other day at 10:30pm\n",
"\n",
"schedule = Schedule.create_for_pipeline_endpoint(workspace=ws, name=\"My_Endpoint_Schedule\",\n",
" pipeline_endpoint_id=published_pipeline_endpoint_id,\n",
" experiment_name='Schedule-run-sample',\n",
" recurrence=recurrence, description=\"Schedule_Run\",\n",
" wait_for_provisioning=True)\n",
"\n",
"# You may want to make sure that the schedule is provisioned properly\n",
"# before making any further changes to the schedule\n",
"\n",
"print(\"Created schedule with id: {}\".format(schedule.id))"
]
},
{
"cell_type": "markdown",
"metadata": {
"nteract": {
"transient": {
"deleting": false
}
}
},
"source": [
"### Get all schedules for a given pipeline endpoint\n",
"Once you have the pipeline endpoint ID, then you can get all schedules for that pipeline endopint."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"jupyter": {
"outputs_hidden": false,
"source_hidden": false
},
"nteract": {
"transient": {
"deleting": false
}
}
},
"outputs": [],
"source": [
"schedules_for_pipeline_endpoints = Schedule.\\\n",
" get_schedules_for_pipeline_endpoint_id(ws,\n",
" pipeline_endpoint_id=published_pipeline_endpoint_id)\n",
"print('Got all schedules for pipeline endpoint:', published_pipeline_endpoint_id, 'Count:',\n",
" len(schedules_for_pipeline_endpoints))\n",
"\n",
"print('done')"
]
},
{
"cell_type": "markdown",
"metadata": {
"nteract": {
"transient": {
"deleting": false
}
}
},
"source": [
"### Disable the schedule created for running the pipeline endpont\n",
"Recall the best practice of disabling schedules when not in use.\n",
"The number of schedule triggers allowed per month per region per subscription is 100,000.\n",
"This is calculated using the project trigger counts for all active schedules."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"jupyter": {
"outputs_hidden": false,
"source_hidden": false
},
"nteract": {
"transient": {
"deleting": false
}
}
},
"outputs": [],
"source": [
"fetched_schedule = Schedule.get(ws, schedule_id)\n",
"print(\"Using schedule with id: {}\".format(fetched_schedule.id))\n",
"\n",
"# Set the wait_for_provisioning flag to False if you do not want to wait \n",
"# for the call to provision the schedule in the backend.\n",
"fetched_schedule.disable(wait_for_provisioning=True)\n",
"fetched_schedule = Schedule.get(ws, schedule_id)\n",
"print(\"Disabled schedule {}. New status is: {}\".format(fetched_schedule.id, fetched_schedule.status))"
]
}
],
"metadata": {
"authors": [
{
"name": "sanpil"
"name": "shbijlan"
}
],
"categories": [
"how-to-use-azureml",
"machine-learning-pipelines",
"intro-to-pipelines"
],
"category": "tutorial",
"compute": [
"AML Compute"
@@ -441,7 +633,7 @@
"framework": [
"Azure ML"
],
"friendly_name": "How to Setup a Schedule for a Published Pipeline",
"friendly_name": "How to Setup a Schedule for a Published Pipeline or Pipeline Endpoint",
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
@@ -459,6 +651,9 @@
"pygments_lexer": "ipython3",
"version": "3.6.7"
},
"nteract": {
"version": "nteract-front-end@1.0.0"
},
"order_index": 10,
"star_tag": [
"featured"
@@ -466,7 +661,7 @@
"tags": [
"None"
],
"task": "Demonstrates the use of Schedules for Published Pipelines"
"task": "Demonstrates the use of Schedules for Published Pipelines and Pipeline endpoints"
},
"nbformat": 4,
"nbformat_minor": 2

View File

@@ -553,7 +553,7 @@
"outputs": [],
"source": [
"from azureml.core import Experiment\n",
"pipeline_run = Experiment(ws, name=\"submit_from_endpoint\").submit(pipeline_endpoint_by_name, tags={'endpoint_tag': \"1\"}, pipeline_version=\"0\")"
"pipeline_run = Experiment(ws, name=\"submit_endpoint_sample\").submit(pipeline_endpoint_by_name, tags={'endpoint_tag': \"1\"}, pipeline_version=\"0\")"
]
}
],

View File

@@ -0,0 +1,274 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Copyright (c) Microsoft Corporation. All rights reserved. \n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/machine-learning-pipelines/intro-to-pipelines/aml-pipelines-use-databricks-as-compute-target.png)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Azure Machine Learning Pipeline with KustoStep\n",
"To use Kusto as a compute target from [Azure Machine Learning Pipeline](https://aka.ms/pl-concept), a KustoStep is used. A KustoStep enables the functionality of running Kusto queries on a target Kusto cluster in Azure ML Pipelines. Each KustoStep can target one Kusto cluster and perform multiple queries on them. This notebook demonstrates the use of KustoStep in Azure Machine Learning (AML) Pipeline.\n",
"\n",
"## Before you begin:\n",
"\n",
"1. **Have an Azure Machine Learning workspace**: You will need details of this workspace later on to define KustoStep.\n",
"2. **Have a Service Principal**: You will need a service principal and use its credentials to access your cluster. See [this](https://docs.microsoft.com/en-us/azure/active-directory/develop/howto-create-service-principal-portal) for more information.\n",
"3. **Have a Blob storage**: You will need a Azure Blob storage for uploading the output of your Kusto query."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Azure Machine Learning and Pipeline SDK-specific imports"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"import azureml.core\n",
"from azureml.core.runconfig import JarLibrary\n",
"from azureml.core.compute import ComputeTarget, KustoCompute\n",
"from azureml.exceptions import ComputeTargetException\n",
"from azureml.core import Workspace, Experiment\n",
"from azureml.pipeline.core import Pipeline, PipelineData\n",
"from azureml.pipeline.steps import KustoStep\n",
"from azureml.core.datastore import Datastore\n",
"from azureml.data.data_reference import DataReference\n",
"\n",
"# Check core SDK version number\n",
"print(\"SDK version:\", azureml.core.VERSION)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Initialize Workspace\n",
"\n",
"Initialize a workspace object from persisted configuration. If you are using an Azure Machine Learning Notebook VM, you are all set. Otherwise, make sure you go through the [configuration Notebook](https://aka.ms/pl-config) first if you haven't."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ws = Workspace.from_config()\n",
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep = '\\n')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Attach Kusto compute target\n",
"Next, you need to create a Kusto compute target and give it a name. You will use this name to refer to your Kusto compute target inside Azure Machine Learning. Your workspace will be associated to this Kusto compute target. You will also need to provide some credentials that will be used to enable access to your target Kusto cluster and database.\n",
"\n",
"- **Resource Group** - The resource group name of your Azure Machine Learning workspace\n",
"- **Workspace Name** - The workspace name of your Azure Machine Learning workspace\n",
"- **Resource ID** - The resource ID of your Kusto cluster\n",
"- **Tenant ID** - The tenant ID associated to your Kusto cluster\n",
"- **Application ID** - The Application ID associated to your Kusto cluster\n",
"- **Application Key** - The Application key associated to your Kusto cluster\n",
"- **Kusto Connection String** - The connection string of your Kusto cluster\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"tags": [
"sample-databrickscompute-attach"
]
},
"outputs": [],
"source": [
"compute_name = \"<compute_name>\" # Name to associate with new compute in workspace\n",
"\n",
"# Account details associated to the target Kusto cluster\n",
"resource_id = \"<resource_id>\" # Resource ID of the Kusto cluster\n",
"kusto_connection_string = \"<kusto_connection_string>\" # Connection string of the Kusto cluster\n",
"application_id = \"<application_id>\" # Application ID associated to the Kusto cluster\n",
"application_key = \"<application_key>\" # Application Key associated to the Kusto cluster\n",
"tenant_id = \"<tenant_id>\" # Tenant ID associated to the Kusto cluster\n",
"\n",
"try:\n",
" kusto_compute = KustoCompute(workspace=ws, name=compute_name)\n",
" print('Compute target {} already exists'.format(compute_name))\n",
"except ComputeTargetException:\n",
" print('Compute not found, will use provided parameters to attach new one')\n",
" config = KustoCompute.attach_configuration(resource_group=ws.resource_group, workspace_name=ws.name, \n",
" resource_id=resource_id, tenant_id=tenant_id, \n",
" kusto_connection_string=kusto_connection_string, \n",
" application_id=application_id, application_key=application_key)\n",
" kusto_compute=ComputeTarget.attach(ws, compute_name, config)\n",
" kusto_compute.wait_for_completion(True)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Setup output\n",
"To use Kusto as a compute target for Azure Machine Learning Pipeline, a KustoStep is used. Currently KustoStep only supports uploading results to Azure Blob store. Let's define an output datastore via PipelineData to be used in KustoStep."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.pipeline.core import PipelineParameter\n",
"\n",
"# Use the default blob storage\n",
"def_blob_store = Datastore.get(ws, \"workspaceblobstore\")\n",
"print('Datastore {} will be used'.format(def_blob_store.name))\n",
"\n",
"step_1_output = PipelineData(\"output\", datastore=def_blob_store)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Add a KustoStep to Pipeline\n",
"Adds a Kusto query as a step in a Pipeline.\n",
"- **name:** Name of the Module\n",
"- **compute_target:** Name of Kusto compute target\n",
"- **database_name:** Name of the database to perform Kusto query on\n",
"- **query_directory:** Path to folder that contains only a text file with Kusto queries (see [here](https://docs.microsoft.com/en-us/azure/data-explorer/kusto/query/) for more details on Kusto queries). \n",
" - If the query is parameterized, then the text file must also include any declaration of query parameters (see [here](https://docs.microsoft.com/en-us/azure/data-explorer/kusto/query/queryparametersstatement?pivots=azuredataexplorer) for more details on query parameters declaration statements). \n",
" - An example of the query text file could just contain the query \"StormEvents | count | as HowManyRecords;\", where StormEvents is the table name. \n",
" - Note. the text file should just contain the declarations and queries without quotation marks around them.\n",
"- **outputs:** Output binding to an Azure Blob Store.\n",
"- **parameter_dict (optional):** Dictionary that contains the values of parameters declared in the query text file in the **query_directory** mentioned above.\n",
" - Dictionary key is the parameter name, and dictionary value is the parameter value.\n",
" - For example, parameter_dict = {\"paramName1\": \"paramValue1\", \"paramName2\": \"paramValue2\"}\n",
"- **allow_reuse (optional):** Whether the step should reuse previous results when run with the same settings/inputs (default to False)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"database_name = \"<database_name>\" # Name of the database to perform Kusto queries on\n",
"query_directory = \"<query_directory>\" # Path to folder that contains a text file with Kusto queries\n",
"\n",
"kustoStep = KustoStep(\n",
" name='KustoNotebook',\n",
" compute_target=compute_name,\n",
" database_name=database_name,\n",
" query_directory=query_directory,\n",
" output=step_1_output,\n",
")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Build and submit the Experiment"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"steps = [kustoStep]\n",
"pipeline = Pipeline(workspace=ws, steps=steps)\n",
"pipeline_run = Experiment(ws, 'Notebook_demo').submit(pipeline)\n",
"pipeline_run.wait_for_completion()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# View Run Details"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.widgets import RunDetails\n",
"RunDetails(pipeline_run).show()"
]
}
],
"metadata": {
"authors": [
{
"name": "t-kachia"
}
],
"category": "tutorial",
"compute": [
"Kusto"
],
"datasets": [
"Custom"
],
"deployment": [
"None"
],
"exclude_from_index": false,
"framework": [
"Azure ML, Kusto"
],
"friendly_name": "How to use KustoStep with AML Pipelines",
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.6"
},
"order_index": 5,
"star_tag": [
"featured"
],
"tags": [
"None"
],
"task": "Demonstrates the use of KustoStep"
},
"nbformat": 4,
"nbformat_minor": 2
}

View File

@@ -30,7 +30,7 @@
"## Introduction\n",
"In this example we showcase how you can use AzureML Dataset to load data for AutoML via AML Pipeline. \n",
"\n",
"If you are using an Azure Machine Learning Notebook VM, you are all set. Otherwise, make sure you have executed the [configuration](https://aka.ms/pl-config) before running this notebook.\n",
"If you are using an Azure Machine Learning Notebook VM, you are all set. Otherwise, make sure you have executed the [configuration](https://aka.ms/pl-config) before running this notebook, please also take a look at the [Automated ML setup-using-a-local-conda-environment](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/automated-machine-learning#setup-using-a-local-conda-environment) section to setup the environment.\n",
"\n",
"In this notebook you will learn how to:\n",
"1. Create an `Experiment` in an existing `Workspace`.\n",
@@ -101,7 +101,7 @@
"metadata": {},
"source": [
"## Create an Azure ML experiment\n",
"Let's create an experiment named \"automlstep-classification\" and a folder to hold the training scripts. The script runs will be recorded under the experiment in Azure.\n",
"Let's create an experiment named \"automlstep-sample\" and a folder to hold the training scripts. The script runs will be recorded under the experiment in Azure.\n",
"\n",
"The best practice is to use separate folders for scripts and its dependent files for each step and specify that folder as the `source_directory` for the step. This helps reduce the size of the snapshot created for the step (only the specific folder is snapshotted). Since changes in any files in the `source_directory` would trigger a re-upload of the snapshot, this helps keep the reuse of the step when there are no changes in the `source_directory` of the step."
]
@@ -113,7 +113,7 @@
"outputs": [],
"source": [
"# Choose a name for the run history container in the workspace.\n",
"experiment_name = 'automlstep-classification'\n",
"experiment_name = 'automlstep-sample'\n",
"project_folder = './project'\n",
"\n",
"experiment = Experiment(ws, experiment_name)\n",
@@ -477,7 +477,7 @@
"metadata": {
"authors": [
{
"name": "sanpil"
"name": "anshirga"
}
],
"category": "tutorial",

View File

@@ -2,7 +2,3 @@ name: aml-pipelines-with-automated-machine-learning-step
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -0,0 +1,343 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/machine-learning-pipelines/intro-to-pipelines/aml-pipelines-how-to-use-estimatorstep.png)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# How to use CommandStep in Azure ML Pipelines\n",
"\n",
"This notebook shows how to use the CommandStep with Azure Machine Learning Pipelines for running R scripts in a pipeline.\n",
"\n",
"The example shows training a model in R to predict probability of fatality for vehicle crashes.\n",
"\n",
"\n",
"## Prerequisite:\n",
"* Understand the [architecture and terms](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture) introduced by Azure Machine Learning\n",
"* If you are using an Azure Machine Learning Notebook VM, you are all set. Otherwise, go through the [configuration notebook](https://aka.ms/pl-config) to:\n",
" * install the Azure ML SDK\n",
" * create a workspace and its configuration file (`config.json`)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Let's get started. First let's import some Python libraries."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import azureml.core\n",
"# check core SDK version number\n",
"print(\"Azure ML SDK Version: \", azureml.core.VERSION)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Initialize workspace\n",
"Initialize a [Workspace](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#workspace) object from the existing workspace you created in the Prerequisites step. `Workspace.from_config()` creates a workspace object from the details stored in `config.json`."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Workspace\n",
"ws = Workspace.from_config()\n",
"print('Workspace name: ' + ws.name, \n",
" 'Azure region: ' + ws.location, \n",
" 'Subscription id: ' + ws.subscription_id, \n",
" 'Resource group: ' + ws.resource_group, sep = '\\n')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"If we could not find the cluster with the given name, then we will create a new cluster here. We will create an `AmlCompute` cluster of `STANDARD_D2_V2` CPU VMs. This process is broken down into 3 steps:\n",
"1. create the configuration (this step is local and only takes a second)\n",
"2. create the cluster (this step will take about **20 seconds**)\n",
"3. provision the VMs to bring the cluster to the initial size (of 1 in this case). This step will take about **3-5 minutes** and is providing only sparse output in the process. Please make sure to wait until the call returns before moving to the next cell"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.compute import ComputeTarget, AmlCompute\n",
"from azureml.core.compute_target import ComputeTargetException\n",
"\n",
"# choose a name for your cluster\n",
"cluster_name = \"cpu-cluster\"\n",
"\n",
"try:\n",
" compute_target = ComputeTarget(workspace=ws, name=cluster_name)\n",
" print('Found existing compute target')\n",
"except ComputeTargetException:\n",
" print('Creating a new compute target...')\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2', max_nodes=4)\n",
"\n",
" # create the cluster\n",
" compute_target = ComputeTarget.create(ws, cluster_name, compute_config)\n",
"\n",
" # can poll for a minimum number of nodes and for a specific timeout. \n",
" # if no min node count is provided it uses the scale settings for the cluster\n",
" compute_target.wait_for_completion(show_output=True, min_node_count=None, timeout_in_minutes=20)\n",
"\n",
"# use get_status() to get a detailed status for the current cluster. \n",
"print(compute_target.get_status().serialize())"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now that you have created the compute target, let's see what the workspace's `compute_targets` property returns. You should now see one entry named 'cpu-cluster' of type `AmlCompute`."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Create a CommandStep\n",
"CommandStep adds a step to run a command in a Pipeline. For the full set of configurable options see the CommandStep [reference docs](https://docs.microsoft.com/python/api/azureml-pipeline-steps/azureml.pipeline.steps.commandstep?view=azure-ml-py).\n",
"\n",
"- **name:** Name of the step\n",
"- **runconfig:** ScriptRunConfig object. You can configure a ScriptRunConfig object as you would for a standalone non-pipeline run and pass it in to this parameter. If using this option, you do not have to specify the `command`, `source_directory`, `compute_target` parameters of the CommandStep constructor as they are already defined in your ScriptRunConfig.\n",
"- **runconfig_pipeline_params:** Override runconfig properties at runtime using key-value pairs each with name of the runconfig property and PipelineParameter for that property\n",
"- **command:** The command to run or path of the executable/script relative to `source_directory`. It is required unless the `runconfig` parameter is specified. It can be specified with string arguments in a single string or with input/output/PipelineParameter in a list.\n",
"- **source_directory:** A folder containing the script and other resources used in the step.\n",
"- **compute_target:** Compute target to use \n",
"- **allow_reuse:** Whether the step should reuse previous results when run with the same settings/inputs. If this is false, a new run will always be generated for this step during pipeline execution.\n",
"- **version:** Optional version tag to denote a change in functionality for the step\n",
"\n",
"> The best practice is to use separate folders for scripts and its dependent files for each step and specify that folder as the `source_directory` for the step. This helps reduce the size of the snapshot created for the step (only the specific folder is snapshotted). Since changes in any files in the `source_directory` would trigger a re-upload of the snapshot, this helps keep the reuse of the step when there are no changes in the `source_directory` of the step."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Configure environment\n",
"\n",
"Configure the environment for the train step. In this example we will create an environment from the Dockerfile we have included.\n",
"\n",
"> Azure ML currently requires Python as an implicit dependency, so Python must installed in your image even if your training script does not have this dependency."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Environment\n",
"import os\n",
"\n",
"src_dir = 'commandstep_r'\n",
"\n",
"env = Environment.from_dockerfile(name='r_env', dockerfile=os.path.join(src_dir, 'Dockerfile'))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Configure input training dataset\n",
"\n",
"This tutorial uses data from the US National Highway Traffic Safety Administration. This dataset includes data from over 25,000 car crashes in the US, with variables you can use to predict the likelihood of a fatality. We have included an Rdata file that includes the accidents data for analysis.\n",
"\n",
"Here we use the workspace's default datastore to upload the training data file (**accidents.Rd**); in practice you can use any datastore you want."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"datastore = ws.get_default_datastore()\n",
"data_ref = datastore.upload_files(files=[os.path.join(src_dir, 'accidents.Rd')], target_path='accidentdata')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now create a FileDataset from the data, which will be used as an input to the train step."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Dataset\n",
"dataset = Dataset.File.from_files(datastore.path('accidentdata'))\n",
"dataset"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now create a ScriptRunConfig that configures the training run. Note that in the `command` we include the input dataset for the training data.\n",
"\n",
"> For detailed guidance on how to move data in pipelines for input and output data, see the documentation [Moving data into and between ML pipelines](https://docs.microsoft.com/azure/machine-learning/how-to-move-data-in-out-of-pipelines)."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import ScriptRunConfig\n",
"\n",
"train_config = ScriptRunConfig(source_directory=src_dir,\n",
" command=['Rscript accidents.R --data_folder', dataset.as_mount(), '--output_folder outputs'],\n",
" compute_target=compute_target,\n",
" environment=env)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now create a CommandStep and pass in the ScriptRunConfig object to the `runconfig` parameter."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.pipeline.steps import CommandStep\n",
"\n",
"train = CommandStep(name='train', runconfig=train_config)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Build and Submit the Pipeline"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.pipeline.core import Pipeline\n",
"from azureml.core import Experiment\n",
"\n",
"pipeline = Pipeline(workspace=ws, steps=[train])\n",
"pipeline_run = Experiment(ws, 'r-commandstep-pipeline').submit(pipeline)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## View Run Details"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.widgets import RunDetails\n",
"RunDetails(pipeline_run).show()"
]
}
],
"metadata": {
"authors": [
{
"name": "minxia"
}
],
"category": "tutorial",
"compute": [
"AML Compute"
],
"datasets": [
"Custom"
],
"deployment": [
"None"
],
"exclude_from_index": false,
"framework": [
"Azure ML"
],
"friendly_name": "Azure Machine Learning Pipeline with CommandStep for R",
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.7"
},
"order_index": 7,
"star_tag": [
"None"
],
"tags": [
"None"
],
"task": "Demonstrates the use of CommandStep for running R scripts"
},
"nbformat": 4,
"nbformat_minor": 2
}

View File

@@ -20,15 +20,15 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"# How to use EstimatorStep in AML Pipeline\n",
"# How to use CommandStep in Azure ML Pipelines\n",
"\n",
"This notebook shows how to use the EstimatorStep with Azure Machine Learning Pipelines. Estimator is a convenient object in Azure Machine Learning that wraps run configuration information to help simplify the tasks of specifying how a script is executed.\n",
"This notebook shows how to use the CommandStep with Azure Machine Learning Pipelines for running commands in steps. The example shows running distributed TensorFlow training from within a pipeline.\n",
"\n",
"\n",
"## Prerequisite:\n",
"* Understand the [architecture and terms](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture) introduced by Azure Machine Learning\n",
"* If you are using an Azure Machine Learning Notebook VM, you are all set. Otherwise, go through the [configuration notebook](https://aka.ms/pl-config) to:\n",
" * install the AML SDK\n",
" * install the Azure ML SDK\n",
" * create a workspace and its configuration file (`config.json`)"
]
},
@@ -100,75 +100,57 @@
"from azureml.core.compute_target import ComputeTargetException\n",
"\n",
"# choose a name for your cluster\n",
"cluster_name = \"amlcomp\"\n",
"cluster_name = \"gpu-cluster\"\n",
"\n",
"try:\n",
" cpu_cluster = ComputeTarget(workspace=ws, name=cluster_name)\n",
" gpu_cluster = ComputeTarget(workspace=ws, name=cluster_name)\n",
" print('Found existing compute target')\n",
"except ComputeTargetException:\n",
" print('Creating a new compute target...')\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_NC6', max_nodes=4)\n",
"\n",
" # create the cluster\n",
" cpu_cluster = ComputeTarget.create(ws, cluster_name, compute_config)\n",
" gpu_cluster = ComputeTarget.create(ws, cluster_name, compute_config)\n",
"\n",
" # can poll for a minimum number of nodes and for a specific timeout. \n",
" # if no min node count is provided it uses the scale settings for the cluster\n",
" cpu_cluster.wait_for_completion(show_output=True, min_node_count=None, timeout_in_minutes=20)\n",
" gpu_cluster.wait_for_completion(show_output=True, min_node_count=None, timeout_in_minutes=20)\n",
"\n",
"# use get_status() to get a detailed status for the current cluster. \n",
"print(cpu_cluster.get_status().serialize())"
"print(gpu_cluster.get_status().serialize())"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now that you have created the compute target, let's see what the workspace's `compute_targets` property returns. You should now see one entry named 'cpu-cluster' of type `AmlCompute`."
"Now that you have created the compute target, let's see what the workspace's `compute_targets` property returns. You should now see one entry named 'gpu-cluster' of type `AmlCompute`."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Use a simple script\n",
"We have already created a simple \"hello world\" script. This is the script that we will submit through the estimator pattern. It prints a hello-world message, and if Azure ML SDK is installed, it will also logs an array of values ([Fibonacci numbers](https://en.wikipedia.org/wiki/Fibonacci_number))."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Build an Estimator object\n",
"Estimator by default will attempt to use Docker-based execution. You can also enable Docker and let estimator pick the default CPU image supplied by Azure ML for execution. You can target an AmlCompute cluster (or any other supported compute target types). You can also customize the conda environment by adding conda and/or pip packages.\n",
"## Create a CommandStep\n",
"CommandStep adds a step to run a command in a Pipeline. For the full set of configurable options see the CommandStep [reference docs](https://docs.microsoft.com/python/api/azureml-pipeline-steps/azureml.pipeline.steps.commandstep?view=azure-ml-py).\n",
"\n",
"> Note: The arguments to the entry script used in the Estimator object should be specified as *list* using\n",
" 'estimator_entry_script_arguments' parameter when instantiating EstimatorStep. Estimator object's parameter\n",
" 'script_params' accepts a dictionary. However 'estimator_entry_script_arguments' parameter expects arguments as\n",
" a list.\n",
"\n",
"> Estimator object initialization involves specifying a list of data input and output.\n",
" In Pipelines, a step can take another step's output as input. So when creating an EstimatorStep.\n",
"- **name:** Name of the step\n",
"- **runconfig:** ScriptRunConfig object. You can configure a ScriptRunConfig object as you would for a standalone non-pipeline run and pass it in to this parameter. If using this option, you do not have to specify the `command`, `source_directory`, `compute_target` parameters of the CommandStep constructor as they are already defined in your ScriptRunConfig.\n",
"- **runconfig_pipeline_params:** Override runconfig properties at runtime using key-value pairs each with name of the runconfig property and PipelineParameter for that property\n",
"- **command:** The command to run or path of the executable/script relative to `source_directory`. It is required unless the `runconfig` parameter is specified. It can be specified with string arguments in a single string or with input/output/PipelineParameter in a list.\n",
"- **source_directory:** A folder containing the script and other resources used in the step.\n",
"- **compute_target:** Compute target to use \n",
"- **allow_reuse:** Whether the step should reuse previous results when run with the same settings/inputs. If this is false, a new run will always be generated for this step during pipeline execution.\n",
"- **version:** Optional version tag to denote a change in functionality for the step\n",
"\n",
"> The best practice is to use separate folders for scripts and its dependent files for each step and specify that folder as the `source_directory` for the step. This helps reduce the size of the snapshot created for the step (only the specific folder is snapshotted). Since changes in any files in the `source_directory` would trigger a re-upload of the snapshot, this helps keep the reuse of the step when there are no changes in the `source_directory` of the step."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"tags": [
"datareference-remarks-sample"
]
},
"outputs": [],
"cell_type": "markdown",
"metadata": {},
"source": [
"from azureml.core import Datastore\n",
"\n",
"def_blob_store = Datastore(ws, \"workspaceblobstore\")\n",
"\n",
"#upload input data to workspaceblobstore\n",
"def_blob_store.upload_files(files=['20news.pkl'], target_path='20newsgroups')"
"First define the environment that you want to step to run in. This example users a curated TensorFlow environment, but in practice you can configure any environment you want."
]
},
{
@@ -177,46 +159,46 @@
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Dataset\n",
"from azureml.data import OutputFileDatasetConfig\n",
"from azureml.core import Environment\n",
"\n",
"# create dataset to be used as the input to estimator step\n",
"input_data = Dataset.File.from_files(def_blob_store.path('20newsgroups/20news.pkl'))\n",
"\n",
"# OutputFileDatasetConfig by default write output to the default workspaceblobstore\n",
"output = OutputFileDatasetConfig()\n",
"\n",
"source_directory = 'estimator_train'"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.train.estimator import Estimator\n",
"\n",
"est = Estimator(source_directory=source_directory, \n",
" compute_target=cpu_cluster, \n",
" entry_script='dummy_train.py', \n",
" conda_packages=['scikit-learn'])"
"tf_env = Environment.get(ws, name='AzureML-TensorFlow-2.3-GPU')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Create an EstimatorStep\n",
"[EstimatorStep](https://docs.microsoft.com/en-us/python/api/azureml-pipeline-steps/azureml.pipeline.steps.estimator_step.estimatorstep?view=azure-ml-py) adds a step to run Estimator in a Pipeline.\n",
"This example will first create a ScriptRunConfig object that configures the training job. Since we are running a distributed job, specify the `distributed_job_config` parameter. If you are just running a single-node job, omit that parameter.\n",
"\n",
"- **name:** Name of the step\n",
"- **estimator:** Estimator object\n",
"- **estimator_entry_script_arguments:** A list of command-line arguments\n",
"- **runconfig_pipeline_params:** Override runconfig properties at runtime using key-value pairs each with name of the runconfig property and PipelineParameter for that property\n",
"- **compute_target:** Compute target to use \n",
"- **allow_reuse:** Whether the step should reuse previous results when run with the same settings/inputs. If this is false, a new run will always be generated for this step during pipeline execution.\n",
"- **version:** Optional version tag to denote a change in functionality for the step"
"> If you have an input dataset you want to use in this step, you can specify that as part of the command. For example, if you have a FileDataset object called `dataset` and a `--data-dir` script argument, you can do the following: `command=['python train.py --epochs 30 --data-dir', dataset.as_mount()]`.\n",
"\n",
"> For detailed guidance on how to move data in pipelines for input and output data, see the documentation [Moving data into and between ML pipelines](https://docs.microsoft.com/azure/machine-learning/how-to-move-data-in-out-of-pipelines)."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import ScriptRunConfig\n",
"from azureml.core.runconfig import MpiConfiguration\n",
"\n",
"src_dir = 'commandstep_train'\n",
"distr_config = MpiConfiguration(node_count=2) # you can also specify the process_count_per_node parameter for multi-process-per-node training\n",
"\n",
"src = ScriptRunConfig(source_directory=src_dir,\n",
" command=['python train.py --epochs 30'],\n",
" compute_target=gpu_cluster,\n",
" environment=tf_env,\n",
" distributed_job_config=distr_config)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now create a CommandStep and pass in the ScriptRunConfig object to the `runconfig` parameter."
]
},
{
@@ -229,20 +211,16 @@
},
"outputs": [],
"source": [
"from azureml.pipeline.steps import EstimatorStep\n",
"from azureml.pipeline.steps import CommandStep\n",
"\n",
"est_step = EstimatorStep(name=\"Estimator_Train\", \n",
" estimator=est, \n",
" estimator_entry_script_arguments=[\"--datadir\", input_data.as_mount(), \"--output\", output],\n",
" runconfig_pipeline_params=None, \n",
" compute_target=cpu_cluster)"
"train = CommandStep(name='train-mnist', runconfig=src)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Build and Submit the Experiment"
"## Build and Submit the Pipeline"
]
},
{
@@ -253,8 +231,9 @@
"source": [
"from azureml.pipeline.core import Pipeline\n",
"from azureml.core import Experiment\n",
"pipeline = Pipeline(workspace=ws, steps=[est_step])\n",
"pipeline_run = Experiment(ws, 'Estimator_sample').submit(pipeline)"
"\n",
"pipeline = Pipeline(workspace=ws, steps=[train])\n",
"pipeline_run = Experiment(ws, 'train-commandstep-pipeline').submit(pipeline)"
]
},
{
@@ -295,7 +274,7 @@
"framework": [
"Azure ML"
],
"friendly_name": "Azure Machine Learning Pipeline with EstimatorStep",
"friendly_name": "Azure Machine Learning Pipeline with CommandStep",
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
@@ -311,7 +290,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.7"
"version": "3.7.7"
},
"order_index": 7,
"star_tag": [
@@ -320,7 +299,7 @@
"tags": [
"None"
],
"task": "Demonstrates the use of EstimatorStep"
"task": "Demonstrates the use of CommandStep"
},
"nbformat": 4,
"nbformat_minor": 2

View File

@@ -1,4 +1,4 @@
name: aml-pipelines-how-to-use-estimatorstep
name: aml-pipelines-with-commandstep
dependencies:
- pip:
- azureml-sdk

View File

@@ -428,7 +428,7 @@
"metadata": {},
"outputs": [],
"source": [
"pipeline_run1 = Experiment(ws, 'Data_dependency').submit(pipeline1)\n",
"pipeline_run1 = Experiment(ws, 'Data_dependency_sample').submit(pipeline1)\n",
"print(\"Pipeline is submitted for execution\")"
]
},

View File

@@ -0,0 +1,11 @@
FROM rocker/tidyverse:4.0.0-ubuntu18.04
# Install python
RUN apt-get update -qq && \
apt-get install -y python3
# Create link for python
RUN ln -f /usr/bin/python3 /usr/bin/python
# Install additional R packages
RUN R -e "install.packages(c('optparse'), repos = 'https://cloud.r-project.org/')"

View File

@@ -0,0 +1,34 @@
#' Copyright(c) Microsoft Corporation.
#' Licensed under the MIT license.
library(optparse)
options <- list(
make_option(c("-d", "--data_folder")),
make_option(c("--output_folder"))
)
opt_parser <- OptionParser(option_list = options)
opt <- parse_args(opt_parser)
paste(opt$data_folder)
accidents <- readRDS(file.path(opt$data_folder, "accidents.Rd"))
summary(accidents)
mod <- glm(dead ~ dvcat + seatbelt + frontal + sex + ageOFocc + yearVeh + airbag + occRole, family=binomial, data=accidents)
summary(mod)
predictions <- factor(ifelse(predict(mod)>0.1, "dead","alive"))
accuracy <- mean(predictions == accidents$dead)
# make directory for output dir
output_dir = opt$output_folder
if (!dir.exists(output_dir)){
dir.create(output_dir)
}
# save model
model_path = file.path(output_dir, "model.rds")
saveRDS(mod, file = model_path)
message("Model saved")

View File

@@ -0,0 +1,8 @@
channels:
- conda-forge
dependencies:
- python=3.7
- pip:
- azureml-defaults
- tensorflow-gpu==2.3.0
- horovod==0.19.5

View File

@@ -0,0 +1,120 @@
# Copyright 2019 Uber Technologies, Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# Script adapted from: https://github.com/horovod/horovod/blob/master/examples/tensorflow2_keras_mnist.py
# ==============================================================================
import tensorflow as tf
import horovod.tensorflow.keras as hvd
import os
import argparse
parser = argparse.ArgumentParser()
parser.add_argument("--learning-rate", "-lr", type=float, default=0.001)
parser.add_argument("--epochs", type=int, default=24)
parser.add_argument("--steps-per-epoch", type=int, default=500)
args = parser.parse_args()
# Horovod: initialize Horovod.
hvd.init()
# Horovod: pin GPU to be used to process local rank (one GPU per process)
gpus = tf.config.experimental.list_physical_devices("GPU")
for gpu in gpus:
tf.config.experimental.set_memory_growth(gpu, True)
if gpus:
tf.config.experimental.set_visible_devices(gpus[hvd.local_rank()], "GPU")
(mnist_images, mnist_labels), _ = tf.keras.datasets.mnist.load_data(
path="mnist-%d.npz" % hvd.rank()
)
dataset = tf.data.Dataset.from_tensor_slices(
(
tf.cast(mnist_images[..., tf.newaxis] / 255.0, tf.float32),
tf.cast(mnist_labels, tf.int64),
)
)
dataset = dataset.repeat().shuffle(10000).batch(128)
mnist_model = tf.keras.Sequential(
[
tf.keras.layers.Conv2D(32, [3, 3], activation="relu"),
tf.keras.layers.Conv2D(64, [3, 3], activation="relu"),
tf.keras.layers.MaxPooling2D(pool_size=(2, 2)),
tf.keras.layers.Dropout(0.25),
tf.keras.layers.Flatten(),
tf.keras.layers.Dense(128, activation="relu"),
tf.keras.layers.Dropout(0.5),
tf.keras.layers.Dense(10, activation="softmax"),
]
)
# Horovod: adjust learning rate based on number of GPUs.
scaled_lr = args.learning_rate * hvd.size()
opt = tf.optimizers.Adam(scaled_lr)
# Horovod: add Horovod DistributedOptimizer.
opt = hvd.DistributedOptimizer(opt)
# Horovod: Specify `experimental_run_tf_function=False` to ensure TensorFlow
# uses hvd.DistributedOptimizer() to compute gradients.
mnist_model.compile(
loss=tf.losses.SparseCategoricalCrossentropy(),
optimizer=opt,
metrics=["accuracy"],
experimental_run_tf_function=False,
)
callbacks = [
# Horovod: broadcast initial variable states from rank 0 to all other processes.
# This is necessary to ensure consistent initialization of all workers when
# training is started with random weights or restored from a checkpoint.
hvd.callbacks.BroadcastGlobalVariablesCallback(0),
# Horovod: average metrics among workers at the end of every epoch.
#
# Note: This callback must be in the list before the ReduceLROnPlateau,
# TensorBoard or other metrics-based callbacks.
hvd.callbacks.MetricAverageCallback(),
# Horovod: using `lr = 1.0 * hvd.size()` from the very beginning leads to worse final
# accuracy. Scale the learning rate `lr = 1.0` ---> `lr = 1.0 * hvd.size()` during
# the first three epochs. See https://arxiv.org/abs/1706.02677 for details.
hvd.callbacks.LearningRateWarmupCallback(
warmup_epochs=3, initial_lr=scaled_lr, verbose=1
),
]
# Horovod: save checkpoints only on worker 0 to prevent other workers from corrupting them.
if hvd.rank() == 0:
output_dir = "./outputs"
os.makedirs(output_dir, exist_ok=True)
callbacks.append(
tf.keras.callbacks.ModelCheckpoint(
os.path.join(output_dir, "checkpoint-{epoch}.h5")
)
)
# Horovod: write logs on worker 0.
verbose = 1 if hvd.rank() == 0 else 0
# Train the model.
# Horovod: adjust number of steps based on number of GPUs.
mnist_model.fit(
dataset,
steps_per_epoch=args.steps_per_epoch // hvd.size(),
callbacks=callbacks,
epochs=args.epochs,
verbose=verbose,
)

View File

@@ -1,30 +0,0 @@
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License.
import argparse
import os
print("*********************************************************")
print("Hello Azure ML!")
parser = argparse.ArgumentParser()
parser.add_argument('--datadir', type=str, help="data directory")
parser.add_argument('--output', type=str, help="output")
args = parser.parse_args()
print("Argument 1: %s" % args.datadir)
print("Argument 2: %s" % args.output)
if not (args.output is None):
os.makedirs(args.output, exist_ok=True)
print("%s created" % args.output)
try:
from azureml.core import Run
run = Run.get_context()
print("Log Fibonacci numbers.")
run.log_list('Fibonacci numbers', [0, 1, 1, 2, 3, 5, 8, 13, 21, 34])
run.complete()
except:
print("Warning: you need to install Azure ML SDK in order to log metrics.")
print("*********************************************************")

View File

@@ -22,3 +22,6 @@ print("Argument 4: %s" % args.pipeline_param)
if not (args.output_compare is None):
os.makedirs(args.output_compare, exist_ok=True)
print("%s created" % args.output_compare)
with open(os.path.join(args.output_compare, 'compare.txt'), 'w') as fw:
fw.write('here is the compare result')

View File

@@ -19,3 +19,8 @@ print("Argument 2: %s" % args.output_extract)
if not (args.output_extract is None):
os.makedirs(args.output_extract, exist_ok=True)
print("%s created" % args.output_extract)
with open(os.path.join(args.input_extract, '20news.pkl'), 'rb') as f:
content = f.read()
with open(os.path.join(args.output_extract, '20news.pkl'), 'wb') as fw:
fw.write(content)

View File

@@ -20,3 +20,8 @@ print("Argument 2: %s" % args.output_train)
if not (args.output_train is None):
os.makedirs(args.output_train, exist_ok=True)
print("%s created" % args.output_train)
with open(os.path.join(args.input_data, '20news.pkl'), 'rb') as f:
content = f.read()
with open(os.path.join(args.output_train, '20news.pkl'), 'wb') as fw:
fw.write(content)

View File

@@ -0,0 +1,21 @@
import argparse
import json
import os
import azureml.core
from azureml.core import Workspace, Experiment, Model
from azureml.core import Run
from azureml.train.hyperdrive import HyperDriveRun
from shutil import copy2
parser = argparse.ArgumentParser()
parser.add_argument('--saved-model', type=str, dest='saved_model', help='path to saved model file')
args = parser.parse_args()
model_output_dir = './model/'
os.makedirs(model_output_dir, exist_ok=True)
copy2(args.saved_model, model_output_dir)
ws = Run.get_context().experiment.workspace
model = Model.register(workspace=ws, model_name='tf-dnn-mnist', model_path=model_output_dir)

View File

@@ -278,16 +278,13 @@
"# Enable Docker\n",
"aml_run_config.environment.docker.enabled = True\n",
"\n",
"# Set Docker base image to the default CPU-based image\n",
"aml_run_config.environment.docker.base_image = \"mcr.microsoft.com/azureml/base:0.2.1\"\n",
"\n",
"# Use conda_dependencies.yml to create a conda environment in the Docker image for execution\n",
"aml_run_config.environment.python.user_managed_dependencies = False\n",
"\n",
"# Specify CondaDependencies obj, add necessary packages\n",
"aml_run_config.environment.python.conda_dependencies = CondaDependencies.create(\n",
" conda_packages=['pandas','scikit-learn'], \n",
" pip_packages=['azureml-sdk[automl,explain]', 'pyarrow'])\n",
" pip_packages=['azureml-sdk[automl]', 'pyarrow'])\n",
"\n",
"print (\"Run configuration created.\")"
]
@@ -463,8 +460,8 @@
" name=\"Merge Taxi Data\",\n",
" script_name=\"merge.py\", \n",
" arguments=[\"--output_merge\", merged_data],\n",
" inputs=[cleansed_green_data.parse_parquet_files(file_extension=None),\n",
" cleansed_yellow_data.parse_parquet_files(file_extension=None)],\n",
" inputs=[cleansed_green_data.parse_parquet_files(),\n",
" cleansed_yellow_data.parse_parquet_files()],\n",
" outputs=[merged_data],\n",
" compute_target=aml_compute,\n",
" runconfig=aml_run_config,\n",
@@ -500,7 +497,7 @@
" name=\"Filter Taxi Data\",\n",
" script_name=\"filter.py\", \n",
" arguments=[\"--output_filter\", filtered_data],\n",
" inputs=[merged_data.parse_parquet_files(file_extension=None)],\n",
" inputs=[merged_data.parse_parquet_files()],\n",
" outputs=[filtered_data],\n",
" compute_target=aml_compute,\n",
" runconfig = aml_run_config,\n",
@@ -536,7 +533,7 @@
" name=\"Normalize Taxi Data\",\n",
" script_name=\"normalize.py\", \n",
" arguments=[\"--output_normalize\", normalized_data],\n",
" inputs=[filtered_data.parse_parquet_files(file_extension=None)],\n",
" inputs=[filtered_data.parse_parquet_files()],\n",
" outputs=[normalized_data],\n",
" compute_target=aml_compute,\n",
" runconfig = aml_run_config,\n",
@@ -577,7 +574,7 @@
" name=\"Transform Taxi Data\",\n",
" script_name=\"transform.py\", \n",
" arguments=[\"--output_transform\", transformed_data],\n",
" inputs=[normalized_data.parse_parquet_files(file_extension=None)],\n",
" inputs=[normalized_data.parse_parquet_files()],\n",
" outputs=[transformed_data],\n",
" compute_target=aml_compute,\n",
" runconfig = aml_run_config,\n",
@@ -617,7 +614,7 @@
" script_name=\"train_test_split.py\", \n",
" arguments=[\"--output_split_train\", output_split_train,\n",
" \"--output_split_test\", output_split_test],\n",
" inputs=[transformed_data.parse_parquet_files(file_extension=None)],\n",
" inputs=[transformed_data.parse_parquet_files()],\n",
" outputs=[output_split_train, output_split_test],\n",
" compute_target=aml_compute,\n",
" runconfig = aml_run_config,\n",
@@ -693,7 +690,7 @@
" \"n_cross_validations\": 5\n",
"}\n",
"\n",
"training_dataset = output_split_train.parse_parquet_files(file_extension=None).keep_columns(['pickup_weekday','pickup_hour', 'distance','passengers', 'vendor', 'cost'])\n",
"training_dataset = output_split_train.parse_parquet_files().keep_columns(['pickup_weekday','pickup_hour', 'distance','passengers', 'vendor', 'cost'])\n",
"\n",
"automl_config = AutoMLConfig(task = 'regression',\n",
" debug_log = 'automated_ml_errors.log',\n",
@@ -777,7 +774,7 @@
"outputs": [],
"source": [
"# Before we proceed we need to wait for the run to complete.\n",
"pipeline_run.wait_for_completion()\n",
"pipeline_run.wait_for_completion(show_output=False)\n",
"\n",
"# functions to download output to local and fetch as dataframe\n",
"def get_download_path(download_path, output_name):\n",

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