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Author SHA1 Message Date
Shivani Santosh Sambare
0ce37dd18f updating spark notebook 2021-07-26 15:51:54 -07:00
Cody
d835b183a5 update README.md (#1552) 2021-07-15 10:43:22 -07:00
Cody
d3cafebff9 add code of conduct (#1551) 2021-07-15 08:08:44 -07:00
Harneet Virk
354b194a25 Merge pull request #1543 from Azure/release_update/Release-106
update samples from Release-106 as a part of  SDK release
2021-07-06 11:05:55 -07:00
amlrelsa-ms
a52d67bb84 update samples from Release-106 as a part of SDK release 2021-07-06 17:17:27 +00:00
Harneet Virk
421ea3d920 Merge pull request #1530 from Azure/release_update/Release-105
update samples from Release-105 as a part of  SDK release
2021-06-25 09:58:05 -07:00
amlrelsa-ms
24f53f1aa1 update samples from Release-105 as a part of SDK release 2021-06-24 23:00:13 +00:00
Harneet Virk
6fc5d11de2 Merge pull request #1518 from Azure/release_update/Release-104
update samples from Release-104 as a part of  SDK release
2021-06-21 10:29:53 -07:00
amlrelsa-ms
d17547d890 update samples from Release-104 as a part of SDK release 2021-06-21 17:16:09 +00:00
Harneet Virk
928e0d4327 Merge pull request #1510 from Azure/release_update/Release-103
update samples from Release-103 as a part of  SDK release
2021-06-14 10:33:34 -07:00
amlrelsa-ms
05327cfbb9 update samples from Release-103 as a part of SDK release 2021-06-14 17:30:30 +00:00
Harneet Virk
8f7717014b Merge pull request #1506 from Azure/release_update/Release-102
update samples from Release-102 as a part of  SDK release 1.30.0
2021-06-07 11:14:02 -07:00
amlrelsa-ms
a47e50b79a update samples from Release-102 as a part of SDK release 2021-06-07 17:34:51 +00:00
Harneet Virk
8f89d88def Merge pull request #1505 from Azure/release_update/Release-101
update samples from Release-101 as a part of  SDK release
2021-06-04 19:54:53 -07:00
amlrelsa-ms
ec97207bb1 update samples from Release-101 as a part of SDK release 2021-06-05 02:54:13 +00:00
Harneet Virk
a2d20b0f47 Merge pull request #1493 from Azure/release_update/Release-98
update samples from Release-98 as a part of  SDK release
2021-05-28 08:04:58 -07:00
amlrelsa-ms
8180cebd75 update samples from Release-98 as a part of SDK release 2021-05-28 03:44:25 +00:00
Harneet Virk
700ab2d782 Merge pull request #1489 from Azure/release_update/Release-97
update samples from Release-97 as a part of  SDK  1.29.0 release
2021-05-25 07:43:14 -07:00
amlrelsa-ms
ec9a5a061d update samples from Release-97 as a part of SDK release 2021-05-24 17:39:23 +00:00
Harneet Virk
467630f955 Merge pull request #1466 from Azure/release_update/Release-96
update samples from Release-96 as a part of  SDK release 1.28.0
2021-05-10 22:48:19 -07:00
amlrelsa-ms
eac6b69bae update samples from Release-96 as a part of SDK release 2021-05-10 18:38:34 +00:00
Harneet Virk
441a5b0141 Merge pull request #1440 from Azure/release_update/Release-95
update samples from Release-95 as a part of  SDK 1.27 release
2021-04-19 11:51:21 -07:00
155 changed files with 2787 additions and 4049 deletions

9
CODE_OF_CONDUCT.md Normal file
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@@ -0,0 +1,9 @@
# Microsoft Open Source Code of Conduct
This project has adopted the [Microsoft Open Source Code of Conduct](https://opensource.microsoft.com/codeofconduct/).
Resources:
- [Microsoft Open Source Code of Conduct](https://opensource.microsoft.com/codeofconduct/)
- [Microsoft Code of Conduct FAQ](https://opensource.microsoft.com/codeofconduct/faq/)
- Contact [opencode@microsoft.com](mailto:opencode@microsoft.com) with questions or concerns

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@@ -1,77 +1,43 @@
# Azure Machine Learning service example notebooks
# Azure Machine Learning Python SDK notebooks
> a community-driven repository of examples using mlflow for tracking can be found at https://github.com/Azure/azureml-examples
This repository contains example notebooks demonstrating the [Azure Machine Learning](https://azure.microsoft.com/services/machine-learning-service/) Python SDK which allows you to build, train, deploy and manage machine learning solutions using Azure. The AML SDK allows you the choice of using local or cloud compute resources, while managing and maintaining the complete data science workflow from the cloud.
Welcome to the Azure Machine Learning Python SDK notebooks repository!
![Azure ML Workflow](https://raw.githubusercontent.com/MicrosoftDocs/azure-docs/master/articles/machine-learning/media/concept-azure-machine-learning-architecture/workflow.png)
## Getting started
These notebooks are recommended for use in an Azure Machine Learning [Compute Instance](https://docs.microsoft.com/azure/machine-learning/concept-compute-instance), where you can run them without any additional set up.
## Quick installation
```sh
pip install azureml-sdk
```
Read more detailed instructions on [how to set up your environment](./NBSETUP.md) using Azure Notebook service, your own Jupyter notebook server, or Docker.
However, the notebooks can be run in any development environment with the correct `azureml` packages installed.
## How to navigate and use the example notebooks?
If you are using an Azure Machine Learning Notebook VM, you are all set. Otherwise, you should always run the [Configuration](./configuration.ipynb) notebook first when setting up a notebook library on a new machine or in a new environment. It configures your notebook library to connect to an Azure Machine Learning workspace, and sets up your workspace and compute to be used by many of the other examples.
This [index](./index.md) should assist in navigating the Azure Machine Learning notebook samples and encourage efficient retrieval of topics and content.
If you want to...
* ...try out and explore Azure ML, start with image classification tutorials: [Part 1 (Training)](./tutorials/image-classification-mnist-data/img-classification-part1-training.ipynb) and [Part 2 (Deployment)](./tutorials/image-classification-mnist-data/img-classification-part2-deploy.ipynb).
* ...learn about experimentation and tracking run history: [track and monitor experiments](./how-to-use-azureml/track-and-monitor-experiments).
* ...train deep learning models at scale, first learn about [Machine Learning Compute](./how-to-use-azureml/training/train-on-amlcompute/train-on-amlcompute.ipynb), and then try [distributed hyperparameter tuning](./how-to-use-azureml/ml-frameworks/pytorch/train-hyperparameter-tune-deploy-with-pytorch/train-hyperparameter-tune-deploy-with-pytorch.ipynb) and [distributed training](./how-to-use-azureml/ml-frameworks/pytorch/distributed-pytorch-with-horovod/distributed-pytorch-with-horovod.ipynb).
* ...deploy models as a realtime scoring service, first learn the basics by [deploying to Azure Container Instance](./how-to-use-azureml/deployment/deploy-to-cloud/model-register-and-deploy.ipynb), then learn how to [production deploy models on Azure Kubernetes Cluster](./how-to-use-azureml/deployment/production-deploy-to-aks/production-deploy-to-aks.ipynb).
* ...deploy models as a batch scoring service: [create Machine Learning Compute for scoring compute](./how-to-use-azureml/training/train-on-amlcompute/train-on-amlcompute.ipynb) and [use Machine Learning Pipelines to deploy your model](https://aka.ms/pl-batch-scoring).
* ...monitor your deployed models, learn about using [App Insights](./how-to-use-azureml/deployment/enable-app-insights-in-production-service/enable-app-insights-in-production-service.ipynb).
## Tutorials
The [Tutorials](./tutorials) folder contains notebooks for the tutorials described in the [Azure Machine Learning documentation](https://aka.ms/aml-docs).
## How to use Azure ML
The [How to use Azure ML](./how-to-use-azureml) folder contains specific examples demonstrating the features of the Azure Machine Learning SDK
- [Training](./how-to-use-azureml/training) - Examples of how to build models using Azure ML's logging and execution capabilities on local and remote compute targets
- [Training with ML and DL frameworks](./how-to-use-azureml/ml-frameworks) - Examples demonstrating how to build and train machine learning models at scale on Azure ML and perform hyperparameter tuning.
- [Manage Azure ML Service](./how-to-use-azureml/manage-azureml-service) - Examples how to perform tasks, such as authenticate against Azure ML service in different ways.
- [Automated Machine Learning](./how-to-use-azureml/automated-machine-learning) - Examples using Automated Machine Learning to automatically generate optimal machine learning pipelines and models
- [Machine Learning Pipelines](./how-to-use-azureml/machine-learning-pipelines) - Examples showing how to create and use reusable pipelines for training and batch scoring
- [Deployment](./how-to-use-azureml/deployment) - Examples showing how to deploy and manage machine learning models and solutions
- [Azure Databricks](./how-to-use-azureml/azure-databricks) - Examples showing how to use Azure ML with Azure Databricks
- [Reinforcement Learning](./how-to-use-azureml/reinforcement-learning) - Examples showing how to train reinforcement learning agents
---
## Documentation
* Quickstarts, end-to-end tutorials, and how-tos on the [official documentation site for Azure Machine Learning service](https://docs.microsoft.com/en-us/azure/machine-learning/service/).
* [Python SDK reference](https://docs.microsoft.com/en-us/python/api/overview/azure/ml/intro?view=azure-ml-py)
* Azure ML Data Prep SDK [overview](https://aka.ms/data-prep-sdk), [Python SDK reference](https://aka.ms/aml-data-prep-apiref), and [tutorials and how-tos](https://aka.ms/aml-data-prep-notebooks).
---
## Community Repository
Visit this [community repository](https://github.com/microsoft/MLOps/tree/master/examples) to find useful end-to-end sample notebooks. Also, please follow these [contribution guidelines](https://github.com/microsoft/MLOps/blob/master/contributing.md) when contributing to this repository.
## Projects using Azure Machine Learning
Visit following repos to see projects contributed by Azure ML users:
- [Learn about Natural Language Processing best practices using Azure Machine Learning service](https://github.com/microsoft/nlp)
- [Pre-Train BERT models using Azure Machine Learning service](https://github.com/Microsoft/AzureML-BERT)
- [Fashion MNIST with Azure ML SDK](https://github.com/amynic/azureml-sdk-fashion)
- [UMass Amherst Student Samples](https://github.com/katiehouse3/microsoft-azure-ml-notebooks) - A number of end-to-end machine learning notebooks, including machine translation, image classification, and customer churn, created by students in the 696DS course at UMass Amherst.
## Data/Telemetry
This repository collects usage data and sends it to Microsoft to help improve our products and services. Read Microsoft's [privacy statement to learn more](https://privacy.microsoft.com/en-US/privacystatement)
To opt out of tracking, please go to the raw markdown or .ipynb files and remove the following line of code:
Install the `azureml.core` Python package:
```sh
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/README.png)"
pip install azureml-core
```
This URL will be slightly different depending on the file.
![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/README.png)
Install additional packages as needed:
```sh
pip install azureml-mlflow
pip install azureml-dataset-runtime
pip install azureml-automl-runtime
pip install azureml-pipeline
pip install azureml-pipeline-steps
...
```
We recommend starting with one of the [quickstarts](tutorials/compute-instance-quickstarts).
## Contributing
This repository is a push-only mirror. Pull requests are ignored.
## Code of Conduct
This project has adopted the [Microsoft Open Source Code of Conduct](https://opensource.microsoft.com/codeofconduct/). Please see the [code of conduct](CODE_OF_CONDUCT.md) for details.
## Reference
- [Documentation](https://docs.microsoft.com/azure/machine-learning)

View File

@@ -103,7 +103,7 @@
"source": [
"import azureml.core\n",
"\n",
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -254,6 +254,8 @@
"\n",
"Many of the sample notebooks use Azure ML managed compute (AmlCompute) to train models using a dynamically scalable pool of compute. In this section you will create default compute clusters for use by the other notebooks and any other operations you choose.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"To create a cluster, you need to specify a compute configuration that specifies the type of machine to be used and the scalability behaviors. Then you choose a name for the cluster that is unique within the workspace that can be used to address the cluster later.\n",
"\n",
"The cluster parameters are:\n",

View File

@@ -46,9 +46,10 @@
"Please see the [configuration notebook](../../configuration.ipynb) for information about creating one, if required.\n",
"This notebook also requires the following packages:\n",
"* `azureml-contrib-fairness`\n",
"* `fairlearn==0.4.6` (v0.5.0 will work with minor modifications)\n",
"* `fairlearn>=0.6.2` (pre-v0.5.0 will work with minor modifications)\n",
"* `joblib`\n",
"* `liac-arff`\n",
"* `raiwidgets~=0.7.0`\n",
"\n",
"Fairlearn relies on features introduced in v0.22.1 of `scikit-learn`. If you have an older version already installed, please uncomment and run the following cell:"
]
@@ -85,7 +86,7 @@
"outputs": [],
"source": [
"from fairlearn.reductions import GridSearch, DemographicParity, ErrorRate\n",
"from fairlearn.widget import FairlearnDashboard\n",
"from raiwidgets import FairnessDashboard\n",
"\n",
"from sklearn.compose import ColumnTransformer\n",
"from sklearn.impute import SimpleImputer\n",
@@ -256,7 +257,7 @@
"metadata": {},
"outputs": [],
"source": [
"FairlearnDashboard(sensitive_features=A_test, sensitive_feature_names=['Sex', 'Race'],\n",
"FairnessDashboard(sensitive_features=A_test,\n",
" y_true=y_test,\n",
" y_pred={\"unmitigated\": unmitigated_predictor.predict(X_test)})"
]
@@ -311,8 +312,8 @@
"sweep.fit(X_train, y_train,\n",
" sensitive_features=A_train.sex)\n",
"\n",
"# For Fairlearn v0.5.0, need sweep.predictors_\n",
"predictors = sweep._predictors"
"# For Fairlearn pre-v0.5.0, need sweep._predictors\n",
"predictors = sweep.predictors_"
]
},
{
@@ -329,16 +330,14 @@
"outputs": [],
"source": [
"errors, disparities = [], []\n",
"for m in predictors:\n",
" classifier = lambda X: m.predict(X)\n",
" \n",
"for predictor in predictors:\n",
" error = ErrorRate()\n",
" error.load_data(X_train, pd.Series(y_train), sensitive_features=A_train.sex)\n",
" disparity = DemographicParity()\n",
" disparity.load_data(X_train, pd.Series(y_train), sensitive_features=A_train.sex)\n",
" \n",
" errors.append(error.gamma(classifier)[0])\n",
" disparities.append(disparity.gamma(classifier).max())\n",
" errors.append(error.gamma(predictor.predict)[0])\n",
" disparities.append(disparity.gamma(predictor.predict).max())\n",
" \n",
"all_results = pd.DataFrame( {\"predictor\": predictors, \"error\": errors, \"disparity\": disparities})\n",
"\n",
@@ -387,8 +386,7 @@
"metadata": {},
"outputs": [],
"source": [
"FairlearnDashboard(sensitive_features=A_test, \n",
" sensitive_feature_names=['Sex', 'Race'],\n",
"FairnessDashboard(sensitive_features=A_test, \n",
" y_true=y_test.tolist(),\n",
" y_pred=predictions_dominant)"
]
@@ -409,7 +407,7 @@
"<a id=\"AzureUpload\"></a>\n",
"## Uploading a Fairness Dashboard to Azure\n",
"\n",
"Uploading a fairness dashboard to Azure is a two stage process. The `FairlearnDashboard` invoked in the previous section relies on the underlying Python kernel to compute metrics on demand. This is obviously not available when the fairness dashboard is rendered in AzureML Studio. By default, the dashboard in Azure Machine Learning Studio also requires the models to be registered. The required stages are therefore:\n",
"Uploading a fairness dashboard to Azure is a two stage process. The `FairnessDashboard` invoked in the previous section relies on the underlying Python kernel to compute metrics on demand. This is obviously not available when the fairness dashboard is rendered in AzureML Studio. By default, the dashboard in Azure Machine Learning Studio also requires the models to be registered. The required stages are therefore:\n",
"1. Register the dominant models\n",
"1. Precompute all the required metrics\n",
"1. Upload to Azure\n",

View File

@@ -3,6 +3,7 @@ dependencies:
- pip:
- azureml-sdk
- azureml-contrib-fairness
- fairlearn==0.4.6
- fairlearn>=0.6.2
- joblib
- liac-arff
- raiwidgets~=0.7.0

View File

@@ -21,7 +21,7 @@ def fetch_openml_with_retries(data_id, max_retries=4, retry_delay=60):
print("Download attempt {0} of {1}".format(i + 1, max_retries))
data = fetch_openml(data_id=data_id, as_frame=True)
break
except Exception as e:
except Exception as e: # noqa: B902
print("Download attempt failed with exception:")
print(e)
if i + 1 != max_retries:
@@ -47,7 +47,7 @@ _categorical_columns = [
def fetch_census_dataset():
"""Fetch the Adult Census Dataset
"""Fetch the Adult Census Dataset.
This uses a particular URL for the Adult Census dataset. The code
is a simplified version of fetch_openml() in sklearn.
@@ -63,6 +63,11 @@ def fetch_census_dataset():
filename = "1595261.gz"
data_url = "https://rainotebookscdn.blob.core.windows.net/datasets/"
remaining_attempts = 5
sleep_duration = 10
while remaining_attempts > 0:
try:
urlretrieve(data_url + filename, filename)
http_stream = gzip.GzipFile(filename=filename, mode='rb')
@@ -74,6 +79,19 @@ def fetch_census_dataset():
stream = _stream_generator(http_stream)
data = arff.load(stream)
except Exception as exc: # noqa: B902
remaining_attempts -= 1
print("Error downloading dataset from {} ({} attempt(s) remaining)"
.format(data_url, remaining_attempts))
print(exc)
time.sleep(sleep_duration)
sleep_duration *= 2
continue
else:
# dataset successfully downloaded
break
else:
raise Exception("Could not retrieve dataset from {}.".format(data_url))
attributes = OrderedDict(data['attributes'])
arff_columns = list(attributes)

View File

@@ -30,7 +30,7 @@
"1. [Training Models](#TrainingModels)\n",
"1. [Logging in to AzureML](#LoginAzureML)\n",
"1. [Registering the Models](#RegisterModels)\n",
"1. [Using the Fairlearn Dashboard](#LocalDashboard)\n",
"1. [Using the Fairness Dashboard](#LocalDashboard)\n",
"1. [Uploading a Fairness Dashboard to Azure](#AzureUpload)\n",
" 1. Computing Fairness Metrics\n",
" 1. Uploading to Azure\n",
@@ -48,9 +48,10 @@
"Please see the [configuration notebook](../../configuration.ipynb) for information about creating one, if required.\n",
"This notebook also requires the following packages:\n",
"* `azureml-contrib-fairness`\n",
"* `fairlearn==0.4.6` (should also work with v0.5.0)\n",
"* `fairlearn>=0.6.2` (also works for pre-v0.5.0 with slight modifications)\n",
"* `joblib`\n",
"* `liac-arff`\n",
"* `raiwidgets~=0.7.0`\n",
"\n",
"Fairlearn relies on features introduced in v0.22.1 of `scikit-learn`. If you have an older version already installed, please uncomment and run the following cell:"
]
@@ -388,10 +389,9 @@
"metadata": {},
"outputs": [],
"source": [
"from fairlearn.widget import FairlearnDashboard\n",
"from raiwidgets import FairnessDashboard\n",
"\n",
"FairlearnDashboard(sensitive_features=A_test, \n",
" sensitive_feature_names=['Sex', 'Race'],\n",
"FairnessDashboard(sensitive_features=A_test, \n",
" y_true=y_test.tolist(),\n",
" y_pred=ys_pred)"
]
@@ -403,7 +403,7 @@
"<a id=\"AzureUpload\"></a>\n",
"## Uploading a Fairness Dashboard to Azure\n",
"\n",
"Uploading a fairness dashboard to Azure is a two stage process. The `FairlearnDashboard` invoked in the previous section relies on the underlying Python kernel to compute metrics on demand. This is obviously not available when the fairness dashboard is rendered in AzureML Studio. The required stages are therefore:\n",
"Uploading a fairness dashboard to Azure is a two stage process. The `FairnessDashboard` invoked in the previous section relies on the underlying Python kernel to compute metrics on demand. This is obviously not available when the fairness dashboard is rendered in AzureML Studio. The required stages are therefore:\n",
"1. Precompute all the required metrics\n",
"1. Upload to Azure\n",
"\n",

View File

@@ -3,6 +3,7 @@ dependencies:
- pip:
- azureml-sdk
- azureml-contrib-fairness
- fairlearn==0.4.6
- fairlearn>=0.6.2
- joblib
- liac-arff
- raiwidgets~=0.7.0

View File

@@ -2,7 +2,7 @@ name: azure_automl
dependencies:
# The python interpreter version.
# Currently Azure ML only supports 3.5.2 and later.
- pip==20.2.4
- pip==21.1.2
- python>=3.5.2,<3.8
- nb_conda
- boto3==1.15.18
@@ -21,8 +21,8 @@ dependencies:
- pip:
# Required packages for AzureML execution, history, and data preparation.
- azureml-widgets~=1.27.0
- azureml-widgets~=1.32.0
- pytorch-transformers==1.0.0
- spacy==2.1.8
- https://aka.ms/automl-resources/packages/en_core_web_sm-2.1.0.tar.gz
- -r https://automlcesdkdataresources.blob.core.windows.net/validated-requirements/1.27.0/validated_win32_requirements.txt [--no-deps]
- -r https://automlresources-prod.azureedge.net/validated-requirements/1.32.0/validated_win32_requirements.txt [--no-deps]

View File

@@ -2,7 +2,7 @@ name: azure_automl
dependencies:
# The python interpreter version.
# Currently Azure ML only supports 3.5.2 and later.
- pip==20.2.4
- pip==21.1.2
- python>=3.5.2,<3.8
- nb_conda
- boto3==1.15.18
@@ -21,8 +21,8 @@ dependencies:
- pip:
# Required packages for AzureML execution, history, and data preparation.
- azureml-widgets~=1.27.0
- azureml-widgets~=1.32.0
- pytorch-transformers==1.0.0
- spacy==2.1.8
- https://aka.ms/automl-resources/packages/en_core_web_sm-2.1.0.tar.gz
- -r https://automlcesdkdataresources.blob.core.windows.net/validated-requirements/1.27.0/validated_linux_requirements.txt [--no-deps]
- -r https://automlresources-prod.azureedge.net/validated-requirements/1.32.0/validated_linux_requirements.txt [--no-deps]

View File

@@ -2,7 +2,7 @@ name: azure_automl
dependencies:
# The python interpreter version.
# Currently Azure ML only supports 3.5.2 and later.
- pip==20.2.4
- pip==21.1.2
- nomkl
- python>=3.5.2,<3.8
- nb_conda
@@ -22,8 +22,8 @@ dependencies:
- pip:
# Required packages for AzureML execution, history, and data preparation.
- azureml-widgets~=1.27.0
- azureml-widgets~=1.32.0
- pytorch-transformers==1.0.0
- spacy==2.1.8
- https://aka.ms/automl-resources/packages/en_core_web_sm-2.1.0.tar.gz
- -r https://automlcesdkdataresources.blob.core.windows.net/validated-requirements/1.27.0/validated_darwin_requirements.txt [--no-deps]
- -r https://automlresources-prod.azureedge.net/validated-requirements/1.32.0/validated_darwin_requirements.txt [--no-deps]

View File

@@ -105,7 +105,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -165,6 +165,9 @@
"source": [
"## Create or Attach existing AmlCompute\n",
"You will need to create a compute target for your AutoML run. In this tutorial, you create AmlCompute as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"#### Creation of AmlCompute takes approximately 5 minutes. \n",
"If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."
@@ -187,7 +190,7 @@
" compute_target = ComputeTarget(workspace=ws, name=cpu_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2',\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_DS12_V2',\n",
" max_nodes=6)\n",
" compute_target = ComputeTarget.create(ws, cpu_cluster_name, compute_config)\n",
"\n",

View File

@@ -93,7 +93,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -127,6 +127,9 @@
"source": [
"## Create or Attach existing AmlCompute\n",
"A compute target is required to execute the Automated ML run. In this tutorial, you create AmlCompute as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"#### Creation of AmlCompute takes approximately 5 minutes. \n",
"If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."

View File

@@ -96,7 +96,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -138,6 +138,8 @@
"## Set up a compute cluster\n",
"This section uses a user-provided compute cluster (named \"dnntext-cluster\" in this example). If a cluster with this name does not exist in the user's workspace, the below code will create a new cluster. You can choose the parameters of the cluster as mentioned in the comments.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"Whether you provide/select a CPU or GPU cluster, AutoML will choose the appropriate DNN for that setup - BiLSTM or BERT text featurizer will be included in the candidate featurizers on CPU and GPU respectively. If your goal is to obtain the most accurate model, we recommend you use GPU clusters since BERT featurizers usually outperform BiLSTM featurizers."
]
},
@@ -160,7 +162,7 @@
" compute_target = ComputeTarget(workspace=ws, name=amlcompute_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size = \"STANDARD_NC6\", # CPU for BiLSTM, such as \"STANDARD_D2_V2\" \n",
" compute_config = AmlCompute.provisioning_configuration(vm_size = \"STANDARD_NC6\", # CPU for BiLSTM, such as \"STANDARD_DS12_V2\" \n",
" # To use BERT (this is recommended for best performance), select a GPU such as \"STANDARD_NC6\" \n",
" # or similar GPU option\n",
" # available in your workspace\n",
@@ -485,7 +487,7 @@
"outputs": [],
"source": [
"test_run = run_inference(test_experiment, compute_target, script_folder, best_dnn_run,\n",
" train_dataset, test_dataset, target_column_name, model_name)"
" test_dataset, target_column_name, model_name)"
]
},
{

View File

@@ -5,7 +5,7 @@ from azureml.core.run import Run
def run_inference(test_experiment, compute_target, script_folder, train_run,
train_dataset, test_dataset, target_column_name, model_name):
test_dataset, target_column_name, model_name):
inference_env = train_run.get_environment()
@@ -16,7 +16,6 @@ def run_inference(test_experiment, compute_target, script_folder, train_run,
'--model_name': model_name
},
inputs=[
train_dataset.as_named_input('train_data'),
test_dataset.as_named_input('test_data')
],
compute_target=compute_target,

View File

@@ -1,5 +1,6 @@
import argparse
import pandas as pd
import numpy as np
from sklearn.externals import joblib
@@ -32,22 +33,21 @@ model = joblib.load(model_path)
run = Run.get_context()
# get input dataset by name
test_dataset = run.input_datasets['test_data']
train_dataset = run.input_datasets['train_data']
X_test_df = test_dataset.drop_columns(columns=[target_column_name]) \
.to_pandas_dataframe()
y_test_df = test_dataset.with_timestamp_columns(None) \
.keep_columns(columns=[target_column_name]) \
.to_pandas_dataframe()
y_train_df = test_dataset.with_timestamp_columns(None) \
.keep_columns(columns=[target_column_name]) \
.to_pandas_dataframe()
predicted = model.predict_proba(X_test_df)
if isinstance(predicted, pd.DataFrame):
predicted = predicted.values
# Use the AutoML scoring module
class_labels = np.unique(np.concatenate((y_train_df.values, y_test_df.values)))
train_labels = model.classes_
class_labels = np.unique(np.concatenate((y_test_df.values, np.reshape(train_labels, (-1, 1)))))
classification_metrics = list(constants.CLASSIFICATION_SCALAR_SET)
scores = scoring.score_classification(y_test_df.values, predicted,
classification_metrics,

View File

@@ -81,7 +81,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -141,6 +141,9 @@
"#### Create or Attach existing AmlCompute\n",
"\n",
"You will need to create a compute target for your AutoML run. In this tutorial, you create AmlCompute as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"#### Creation of AmlCompute takes approximately 5 minutes. \n",
"If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."
@@ -163,7 +166,7 @@
" compute_target = ComputeTarget(workspace=ws, name=amlcompute_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2',\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_DS12_V2',\n",
" max_nodes=4)\n",
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, compute_config)\n",
"\n",

View File

@@ -49,22 +49,24 @@ print("Argument 1(ds_name): %s" % args.ds_name)
dstor = ws.get_default_datastore()
register_dataset = False
end_time = datetime.utcnow()
try:
ds = Dataset.get_by_name(ws, args.ds_name)
end_time_last_slice = ds.data_changed_time.replace(tzinfo=None)
print("Dataset {0} last updated on {1}".format(args.ds_name,
end_time_last_slice))
except Exception as e:
except Exception:
print(traceback.format_exc())
print("Dataset with name {0} not found, registering new dataset.".format(args.ds_name))
register_dataset = True
end_time_last_slice = datetime.today() - relativedelta(weeks=2)
end_time = datetime(2021, 5, 1, 0, 0)
end_time_last_slice = end_time - relativedelta(weeks=2)
end_time = datetime.utcnow()
train_df = get_noaa_data(end_time_last_slice, end_time)
if train_df.size > 0:
print("Received {0} rows of new data after {0}.".format(
print("Received {0} rows of new data after {1}.".format(
train_df.shape[0], end_time_last_slice))
folder_name = "{}/{:04d}/{:02d}/{:02d}/{:02d}/{:02d}/{:02d}".format(args.ds_name, end_time.year,
end_time.month, end_time.day,

View File

@@ -0,0 +1,420 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/automated-machine-learning/experimental/classification-credit-card-fraud/auto-ml-classification-credit-card-fraud.png)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Automated Machine Learning\n",
"_**Classification of credit card fraudulent transactions on local managed compute **_\n",
"\n",
"## Contents\n",
"1. [Introduction](#Introduction)\n",
"1. [Setup](#Setup)\n",
"1. [Train](#Train)\n",
"1. [Results](#Results)\n",
"1. [Test](#Test)\n",
"1. [Acknowledgements](#Acknowledgements)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Introduction\n",
"\n",
"In this example we use the associated credit card dataset to showcase how you can use AutoML for a simple classification problem. The goal is to predict if a credit card transaction is considered a fraudulent charge.\n",
"\n",
"This notebook is using local managed compute to train the model.\n",
"\n",
"If you are using an Azure Machine Learning Compute Instance, you are all set. Otherwise, go through the [configuration](../../../configuration.ipynb) notebook first if you haven't already to establish your connection to the AzureML Workspace. \n",
"\n",
"In this notebook you will learn how to:\n",
"1. Create an experiment using an existing workspace.\n",
"2. Configure AutoML using `AutoMLConfig`.\n",
"3. Train the model using local managed compute.\n",
"4. Explore the results.\n",
"5. Test the fitted model."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Setup\n",
"\n",
"As part of the setup you have already created an Azure ML `Workspace` object. For Automated ML you will need to create an `Experiment` object, which is a named object in a `Workspace` used to run experiments."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import logging\n",
"\n",
"import pandas as pd\n",
"\n",
"import azureml.core\n",
"from azureml.core.compute_target import LocalTarget\n",
"from azureml.core.experiment import Experiment\n",
"from azureml.core.workspace import Workspace\n",
"from azureml.core.dataset import Dataset\n",
"from azureml.train.automl import AutoMLConfig"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"This sample notebook may use features that are not available in previous versions of the Azure ML SDK."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ws = Workspace.from_config()\n",
"\n",
"# choose a name for experiment\n",
"experiment_name = 'automl-local-managed'\n",
"\n",
"experiment=Experiment(ws, experiment_name)\n",
"\n",
"output = {}\n",
"output['Subscription ID'] = ws.subscription_id\n",
"output['Workspace'] = ws.name\n",
"output['Resource Group'] = ws.resource_group\n",
"output['Location'] = ws.location\n",
"output['Experiment Name'] = experiment.name\n",
"pd.set_option('display.max_colwidth', -1)\n",
"outputDf = pd.DataFrame(data = output, index = [''])\n",
"outputDf.T"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Determine if local docker is configured for Linux images\n",
"\n",
"Local managed runs will leverage a Linux docker container to submit the run to. Due to this, the docker needs to be configured to use Linux containers."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Check if Docker is installed and Linux containers are enabled\n",
"import subprocess\n",
"from subprocess import CalledProcessError\n",
"try:\n",
" assert subprocess.run(\"docker -v\", shell=True).returncode == 0, 'Local Managed runs require docker to be installed.'\n",
" out = subprocess.check_output(\"docker system info\", shell=True).decode('ascii')\n",
" assert \"OSType: linux\" in out, 'Docker engine needs to be configured to use Linux containers.' \\\n",
" 'https://docs.docker.com/docker-for-windows/#switch-between-windows-and-linux-containers'\n",
"except CalledProcessError as ex:\n",
" raise Exception('Local Managed runs require docker to be installed.') from ex"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Data"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Load Data\n",
"\n",
"Load the credit card dataset from a csv file containing both training features and labels. The features are inputs to the model, while the training labels represent the expected output of the model. Next, we'll split the data using random_split and extract the training data for the model."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"data = \"https://automlsamplenotebookdata.blob.core.windows.net/automl-sample-notebook-data/creditcard.csv\"\n",
"dataset = Dataset.Tabular.from_delimited_files(data)\n",
"training_data, validation_data = dataset.random_split(percentage=0.8, seed=223)\n",
"label_column_name = 'Class'"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Train\n",
"\n",
"Instantiate a AutoMLConfig object. This defines the settings and data used to run the experiment.\n",
"\n",
"|Property|Description|\n",
"|-|-|\n",
"|**task**|classification or regression|\n",
"|**primary_metric**|This is the metric that you want to optimize. Classification supports the following primary metrics: <br><i>accuracy</i><br><i>AUC_weighted</i><br><i>average_precision_score_weighted</i><br><i>norm_macro_recall</i><br><i>precision_score_weighted</i>|\n",
"|**enable_early_stopping**|Stop the run if the metric score is not showing improvement.|\n",
"|**n_cross_validations**|Number of cross validation splits.|\n",
"|**training_data**|Input dataset, containing both features and label column.|\n",
"|**label_column_name**|The name of the label column.|\n",
"|**enable_local_managed**|Enable the experimental local-managed scenario.|\n",
"\n",
"**_You can find more information about primary metrics_** [here](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-configure-auto-train#primary-metric)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"automl_settings = {\n",
" \"n_cross_validations\": 3,\n",
" \"primary_metric\": 'average_precision_score_weighted',\n",
" \"enable_early_stopping\": True,\n",
" \"experiment_timeout_hours\": 0.3, #for real scenarios we recommend a timeout of at least one hour \n",
" \"verbosity\": logging.INFO,\n",
"}\n",
"\n",
"automl_config = AutoMLConfig(task = 'classification',\n",
" debug_log = 'automl_errors.log',\n",
" compute_target = LocalTarget(),\n",
" enable_local_managed = True,\n",
" training_data = training_data,\n",
" label_column_name = label_column_name,\n",
" **automl_settings\n",
" )"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Call the `submit` method on the experiment object and pass the run configuration. Depending on the data and the number of iterations this can run for a while. Validation errors and current status will be shown when setting `show_output=True` and the execution will be synchronous."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"parent_run = experiment.submit(automl_config, show_output = True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# If you need to retrieve a run that already started, use the following code\n",
"#from azureml.train.automl.run import AutoMLRun\n",
"#parent_run = AutoMLRun(experiment = experiment, run_id = '<replace with your run id>')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"parent_run"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Results"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Explain model\n",
"\n",
"Automated ML models can be explained and visualized using the SDK Explainability library. "
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Analyze results\n",
"\n",
"### Retrieve the Best Child Run\n",
"\n",
"Below we select the best pipeline from our iterations. The `get_best_child` method returns the best run. Overloads on `get_best_child` allow you to retrieve the best run for *any* logged metric."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"best_run = parent_run.get_best_child()\n"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Test the fitted model\n",
"\n",
"Now that the model is trained, split the data in the same way the data was split for training (The difference here is the data is being split locally) and then run the test data through the trained model to get the predicted values."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"X_test_df = validation_data.drop_columns(columns=[label_column_name])\n",
"y_test_df = validation_data.keep_columns(columns=[label_column_name], validate=True)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Creating ModelProxy for submitting prediction runs to the training environment.\n",
"We will create a ModelProxy for the best child run, which will allow us to submit a run that does the prediction in the training environment. Unlike the local client, which can have different versions of some libraries, the training environment will have all the compatible libraries for the model already."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.train.automl.model_proxy import ModelProxy\n",
"best_model_proxy = ModelProxy(best_run)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# call the predict functions on the model proxy\n",
"y_pred = best_model_proxy.predict(X_test_df).to_pandas_dataframe()\n",
"y_pred"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Acknowledgements"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"This Credit Card fraud Detection dataset is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/ and is available at: https://www.kaggle.com/mlg-ulb/creditcardfraud\n",
"\n",
"\n",
"The dataset has been collected and analysed during a research collaboration of Worldline and the Machine Learning Group (http://mlg.ulb.ac.be) of ULB (Universit\u00c3\u0192\u00c2\u00a9 Libre de Bruxelles) on big data mining and fraud detection. More details on current and past projects on related topics are available on https://www.researchgate.net/project/Fraud-detection-5 and the page of the DefeatFraud project\n",
"Please cite the following works: \n",
"\u00c3\u00a2\u00e2\u201a\u00ac\u00c2\u00a2\tAndrea Dal Pozzolo, Olivier Caelen, Reid A. Johnson and Gianluca Bontempi. Calibrating Probability with Undersampling for Unbalanced Classification. In Symposium on Computational Intelligence and Data Mining (CIDM), IEEE, 2015\n",
"\u00c3\u00a2\u00e2\u201a\u00ac\u00c2\u00a2\tDal Pozzolo, Andrea; Caelen, Olivier; Le Borgne, Yann-Ael; Waterschoot, Serge; Bontempi, Gianluca. Learned lessons in credit card fraud detection from a practitioner perspective, Expert systems with applications,41,10,4915-4928,2014, Pergamon\n",
"\u00c3\u00a2\u00e2\u201a\u00ac\u00c2\u00a2\tDal Pozzolo, Andrea; Boracchi, Giacomo; Caelen, Olivier; Alippi, Cesare; Bontempi, Gianluca. Credit card fraud detection: a realistic modeling and a novel learning strategy, IEEE transactions on neural networks and learning systems,29,8,3784-3797,2018,IEEE\n",
"o\tDal Pozzolo, Andrea Adaptive Machine learning for credit card fraud detection ULB MLG PhD thesis (supervised by G. Bontempi)\n",
"\u00c3\u00a2\u00e2\u201a\u00ac\u00c2\u00a2\tCarcillo, Fabrizio; Dal Pozzolo, Andrea; Le Borgne, Yann-A\u00c3\u0192\u00c2\u00abl; Caelen, Olivier; Mazzer, Yannis; Bontempi, Gianluca. Scarff: a scalable framework for streaming credit card fraud detection with Spark, Information fusion,41, 182-194,2018,Elsevier\n",
"\u00c3\u00a2\u00e2\u201a\u00ac\u00c2\u00a2\tCarcillo, Fabrizio; Le Borgne, Yann-A\u00c3\u0192\u00c2\u00abl; Caelen, Olivier; Bontempi, Gianluca. Streaming active learning strategies for real-life credit card fraud detection: assessment and visualization, International Journal of Data Science and Analytics, 5,4,285-300,2018,Springer International Publishing"
]
}
],
"metadata": {
"authors": [
{
"name": "sekrupa"
}
],
"category": "tutorial",
"compute": [
"AML Compute"
],
"datasets": [
"Creditcard"
],
"deployment": [
"None"
],
"exclude_from_index": false,
"file_extension": ".py",
"framework": [
"None"
],
"friendly_name": "Classification of credit card fraudulent transactions using Automated ML",
"index_order": 5,
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.7"
},
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"tags": [
"AutomatedML"
],
"task": "Classification",
"version": "3.6.7"
},
"nbformat": 4,
"nbformat_minor": 2
}

View File

@@ -0,0 +1,4 @@
name: auto-ml-classification-credit-card-fraud-local-managed
dependencies:
- pip:
- azureml-sdk

View File

@@ -91,7 +91,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -143,7 +143,7 @@
" compute_target = ComputeTarget(workspace=ws, name=cpu_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2',\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_DS12_V2',\n",
" max_nodes=4)\n",
" compute_target = ComputeTarget.create(ws, cpu_cluster_name, compute_config)\n",
"\n",

View File

@@ -113,7 +113,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -162,7 +162,9 @@
},
"source": [
"### Using AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for your AutoML run. In this tutorial, you use `AmlCompute` as your training compute resource."
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for your AutoML run. In this tutorial, you use `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{
@@ -185,7 +187,7 @@
" compute_target = ComputeTarget(workspace=ws, name=cpu_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2',\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_DS12_V2',\n",
" max_nodes=4)\n",
" compute_target = ComputeTarget.create(ws, cpu_cluster_name, compute_config)\n",
"\n",
@@ -660,7 +662,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.7"
"version": "3.6.9"
}
},
"nbformat": 4,

View File

@@ -87,7 +87,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -129,6 +129,9 @@
"source": [
"## Compute\n",
"You will need to create a [compute target](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute) for your AutoML run. In this tutorial, you create AmlCompute as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"#### Creation of AmlCompute takes approximately 5 minutes. \n",
"If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."
@@ -151,7 +154,7 @@
" compute_target = ComputeTarget(workspace=ws, name=amlcompute_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2',\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_DS12_V2',\n",
" max_nodes=4)\n",
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, compute_config)\n",
"\n",

View File

@@ -24,10 +24,11 @@
"_**Forecasting using the Energy Demand Dataset**_\n",
"\n",
"## Contents\n",
"1. [Introduction](#Introduction)\n",
"1. [Setup](#Setup)\n",
"1. [Data and Forecasting Configurations](#Data)\n",
"1. [Train](#Train)\n",
"1. [Introduction](#introduction)\n",
"1. [Setup](#setup)\n",
"1. [Data and Forecasting Configurations](#data)\n",
"1. [Train](#train)\n",
"1. [Generate and Evaluate the Forecast](#forecast)\n",
"\n",
"Advanced Forecasting\n",
"1. [Advanced Training](#advanced_training)\n",
@@ -38,7 +39,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"## Introduction\n",
"# Introduction<a id=\"introduction\"></a>\n",
"\n",
"In this example we use the associated New York City energy demand dataset to showcase how you can use AutoML for a simple forecasting problem and explore the results. The goal is predict the energy demand for the next 48 hours based on historic time-series data.\n",
"\n",
@@ -49,15 +50,16 @@
"1. Configure AutoML using 'AutoMLConfig'\n",
"1. Train the model using AmlCompute\n",
"1. Explore the engineered features and results\n",
"1. Generate the forecast and compute the out-of-sample accuracy metrics\n",
"1. Configuration and remote run of AutoML for a time-series model with lag and rolling window features\n",
"1. Run and explore the forecast"
"1. Run and explore the forecast with lagging features"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Setup"
"# Setup<a id=\"setup\"></a>"
]
},
{
@@ -97,7 +99,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -177,7 +179,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"# Data\n",
"# Data<a id=\"data\"></a>\n",
"\n",
"We will use energy consumption [data from New York City](http://mis.nyiso.com/public/P-58Blist.htm) for model training. The data is stored in a tabular format and includes energy demand and basic weather data at an hourly frequency. \n",
"\n",
@@ -309,7 +311,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"## Train\n",
"# Train<a id=\"train\"></a>\n",
"\n",
"Instantiate an AutoMLConfig object. This config defines the settings and data used to run the experiment. We can provide extra configurations within 'automl_settings', for this forecasting task we add the forecasting parameters to hold all the additional forecasting parameters.\n",
"\n",
@@ -451,9 +453,11 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"## Forecasting\n",
"# Forecasting<a id=\"forecast\"></a>\n",
"\n",
"Now that we have retrieved the best pipeline/model, it can be used to make predictions on test data. First, we remove the target values from the test set:"
"Now that we have retrieved the best pipeline/model, it can be used to make predictions on test data. We will do batch scoring on the test dataset which should have the same schema as training dataset.\n",
"\n",
"The inference will run on a remote compute. In this example, it will re-use the training compute."
]
},
{
@@ -462,16 +466,15 @@
"metadata": {},
"outputs": [],
"source": [
"X_test = test.to_pandas_dataframe().reset_index(drop=True)\n",
"y_test = X_test.pop(target_column_name).values"
"test_experiment = Experiment(ws, experiment_name + \"_inference\")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Forecast Function\n",
"For forecasting, we will use the forecast function instead of the predict function. Using the predict method would result in getting predictions for EVERY horizon the forecaster can predict at. This is useful when training and evaluating the performance of the forecaster at various horizons, but the level of detail is excessive for normal use. Forecast function also can handle more complicated scenarios, see the [forecast function notebook](../forecasting-forecast-function/auto-ml-forecasting-function.ipynb)."
"### Retreiving forecasts from the model\n",
"We have created a function called `run_forecast` that submits the test data to the best model determined during the training run and retrieves forecasts. This function uses a helper script `forecasting_script` which is uploaded and expecuted on the remote compute."
]
},
{
@@ -480,10 +483,16 @@
"metadata": {},
"outputs": [],
"source": [
"# The featurized data, aligned to y, will also be returned.\n",
"# This contains the assumptions that were made in the forecast\n",
"# and helps align the forecast to the original data\n",
"y_predictions, X_trans = fitted_model.forecast(X_test)"
"from run_forecast import run_remote_inference\n",
"remote_run_infer = run_remote_inference(test_experiment=test_experiment,\n",
" compute_target=compute_target,\n",
" train_run=best_run,\n",
" test_dataset=test,\n",
" target_column_name=target_column_name)\n",
"remote_run_infer.wait_for_completion(show_output=False)\n",
"\n",
"# download the inference output file to the local machine\n",
"remote_run_infer.download_file('outputs/predictions.csv', 'predictions.csv')"
]
},
{
@@ -491,9 +500,7 @@
"metadata": {},
"source": [
"### Evaluate\n",
"To evaluate the accuracy of the forecast, we'll compare against the actual sales quantities for some select metrics, included the mean absolute percentage error (MAPE). For more metrics that can be used for evaluation after training, please see [supported metrics](https://docs.microsoft.com/en-us/azure/machine-learning/how-to-understand-automated-ml#regressionforecasting-metrics), and [how to calculate residuals](https://docs.microsoft.com/en-us/azure/machine-learning/how-to-understand-automated-ml#residuals).\n",
"\n",
"It is a good practice to always align the output explicitly to the input, as the count and order of the rows may have changed during transformations that span multiple rows."
"To evaluate the accuracy of the forecast, we'll compare against the actual sales quantities for some select metrics, included the mean absolute percentage error (MAPE). For more metrics that can be used for evaluation after training, please see [supported metrics](https://docs.microsoft.com/en-us/azure/machine-learning/how-to-understand-automated-ml#regressionforecasting-metrics), and [how to calculate residuals](https://docs.microsoft.com/en-us/azure/machine-learning/how-to-understand-automated-ml#residuals)."
]
},
{
@@ -502,9 +509,9 @@
"metadata": {},
"outputs": [],
"source": [
"from forecasting_helper import align_outputs\n",
"\n",
"df_all = align_outputs(y_predictions, X_trans, X_test, y_test, target_column_name)"
"# load forecast data frame\n",
"fcst_df = pd.read_csv('predictions.csv', parse_dates=[time_column_name])\n",
"fcst_df.head()"
]
},
{
@@ -519,8 +526,8 @@
"\n",
"# use automl metrics module\n",
"scores = scoring.score_regression(\n",
" y_test=df_all[target_column_name],\n",
" y_pred=df_all['predicted'],\n",
" y_test=fcst_df[target_column_name],\n",
" y_pred=fcst_df['predicted'],\n",
" metrics=list(constants.Metric.SCALAR_REGRESSION_SET))\n",
"\n",
"print(\"[Test data scores]\\n\")\n",
@@ -529,8 +536,8 @@
" \n",
"# Plot outputs\n",
"%matplotlib inline\n",
"test_pred = plt.scatter(df_all[target_column_name], df_all['predicted'], color='b')\n",
"test_test = plt.scatter(df_all[target_column_name], df_all[target_column_name], color='g')\n",
"test_pred = plt.scatter(fcst_df[target_column_name], fcst_df['predicted'], color='b')\n",
"test_test = plt.scatter(fcst_df[target_column_name], fcst_df[target_column_name], color='g')\n",
"plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
"plt.show()"
]
@@ -539,23 +546,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"Looking at `X_trans` is also useful to see what featurization happened to the data."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"X_trans"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Advanced Training <a id=\"advanced_training\"></a>\n",
"# Advanced Training <a id=\"advanced_training\"></a>\n",
"We did not use lags in the previous model specification. In effect, the prediction was the result of a simple regression on date, time series identifier columns and any additional features. This is often a very good prediction as common time series patterns like seasonality and trends can be captured in this manner. Such simple regression is horizon-less: it doesn't matter how far into the future we are predicting, because we are not using past data. In the previous example, the horizon was only used to split the data for cross-validation."
]
},
@@ -638,7 +629,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"## Advanced Results<a id=\"advanced_results\"></a>\n",
"# Advanced Results<a id=\"advanced_results\"></a>\n",
"We did not use lags in the previous model specification. In effect, the prediction was the result of a simple regression on date, time series identifier columns and any additional features. This is often a very good prediction as common time series patterns like seasonality and trends can be captured in this manner. Such simple regression is horizon-less: it doesn't matter how far into the future we are predicting, because we are not using past data. In the previous example, the horizon was only used to split the data for cross-validation."
]
},
@@ -648,10 +639,17 @@
"metadata": {},
"outputs": [],
"source": [
"# The featurized data, aligned to y, will also be returned.\n",
"# This contains the assumptions that were made in the forecast\n",
"# and helps align the forecast to the original data\n",
"y_predictions, X_trans = fitted_model_lags.forecast(X_test)"
"test_experiment_advanced = Experiment(ws, experiment_name + \"_inference_advanced\")\n",
"advanced_remote_run_infer = run_remote_inference(test_experiment=test_experiment_advanced,\n",
" compute_target=compute_target,\n",
" train_run=best_run_lags,\n",
" test_dataset=test,\n",
" target_column_name=target_column_name,\n",
" inference_folder='./forecast_advanced')\n",
"advanced_remote_run_infer.wait_for_completion(show_output=False)\n",
"\n",
"# download the inference output file to the local machine\n",
"advanced_remote_run_infer.download_file('outputs/predictions.csv', 'predictions_advanced.csv')"
]
},
{
@@ -660,9 +658,8 @@
"metadata": {},
"outputs": [],
"source": [
"from forecasting_helper import align_outputs\n",
"\n",
"df_all = align_outputs(y_predictions, X_trans, X_test, y_test, target_column_name)"
"fcst_adv_df = pd.read_csv('predictions_advanced.csv', parse_dates=[time_column_name])\n",
"fcst_adv_df.head()"
]
},
{
@@ -677,8 +674,8 @@
"\n",
"# use automl metrics module\n",
"scores = scoring.score_regression(\n",
" y_test=df_all[target_column_name],\n",
" y_pred=df_all['predicted'],\n",
" y_test=fcst_adv_df[target_column_name],\n",
" y_pred=fcst_adv_df['predicted'],\n",
" metrics=list(constants.Metric.SCALAR_REGRESSION_SET))\n",
"\n",
"print(\"[Test data scores]\\n\")\n",
@@ -687,8 +684,8 @@
" \n",
"# Plot outputs\n",
"%matplotlib inline\n",
"test_pred = plt.scatter(df_all[target_column_name], df_all['predicted'], color='b')\n",
"test_test = plt.scatter(df_all[target_column_name], df_all[target_column_name], color='g')\n",
"test_pred = plt.scatter(fcst_adv_df[target_column_name], fcst_adv_df['predicted'], color='b')\n",
"test_test = plt.scatter(fcst_adv_df[target_column_name], fcst_adv_df[target_column_name], color='g')\n",
"plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
"plt.show()"
]
@@ -719,7 +716,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.8"
"version": "3.6.9"
}
},
"nbformat": 4,

View File

@@ -1,5 +1,15 @@
"""
This is the script that is executed on the compute instance. It relies
on the model.pkl file which is uploaded along with this script to the
compute instance.
"""
import argparse
import pandas as pd
import numpy as np
from azureml.core import Dataset, Run
from azureml.automl.core.shared.constants import TimeSeriesInternal
from sklearn.externals import joblib
from pandas.tseries.frequencies import to_offset
@@ -42,3 +52,38 @@ def align_outputs(y_predicted, X_trans, X_test, y_test, target_column_name,
clean = together[together[[target_column_name,
predicted_column_name]].notnull().all(axis=1)]
return(clean)
parser = argparse.ArgumentParser()
parser.add_argument(
'--target_column_name', type=str, dest='target_column_name',
help='Target Column Name')
parser.add_argument(
'--test_dataset', type=str, dest='test_dataset',
help='Test Dataset')
args = parser.parse_args()
target_column_name = args.target_column_name
test_dataset_id = args.test_dataset
run = Run.get_context()
ws = run.experiment.workspace
# get the input dataset by id
test_dataset = Dataset.get_by_id(ws, id=test_dataset_id)
X_test = test_dataset.to_pandas_dataframe().reset_index(drop=True)
y_test = X_test.pop(target_column_name).values
# generate forecast
fitted_model = joblib.load('model.pkl')
y_predictions, X_trans = fitted_model.forecast(X_test)
# align output
df_all = align_outputs(y_predictions, X_trans, X_test, y_test, target_column_name)
file_name = 'outputs/predictions.csv'
export_csv = df_all.to_csv(file_name, header=True, index=False) # added Index
# Upload the predictions into artifacts
run.upload_file(name=file_name, path_or_stream=file_name)

View File

@@ -1,22 +0,0 @@
import pandas as pd
import numpy as np
def APE(actual, pred):
"""
Calculate absolute percentage error.
Returns a vector of APE values with same length as actual/pred.
"""
return 100 * np.abs((actual - pred) / actual)
def MAPE(actual, pred):
"""
Calculate mean absolute percentage error.
Remove NA and values where actual is close to zero
"""
not_na = ~(np.isnan(actual) | np.isnan(pred))
not_zero = ~np.isclose(actual, 0.0)
actual_safe = actual[not_na & not_zero]
pred_safe = pred[not_na & not_zero]
return np.mean(APE(actual_safe, pred_safe))

View File

@@ -0,0 +1,38 @@
import os
import shutil
from azureml.core import ScriptRunConfig
def run_remote_inference(test_experiment, compute_target, train_run,
test_dataset, target_column_name, inference_folder='./forecast'):
# Create local directory to copy the model.pkl and forecsting_script.py files into.
# These files will be uploaded to and executed on the compute instance.
os.makedirs(inference_folder, exist_ok=True)
shutil.copy('forecasting_script.py', inference_folder)
train_run.download_file('outputs/model.pkl',
os.path.join(inference_folder, 'model.pkl'))
inference_env = train_run.get_environment()
config = ScriptRunConfig(source_directory=inference_folder,
script='forecasting_script.py',
arguments=['--target_column_name',
target_column_name,
'--test_dataset',
test_dataset.as_named_input(test_dataset.name)],
compute_target=compute_target,
environment=inference_env)
run = test_experiment.submit(config,
tags={'training_run_id':
train_run.id,
'run_algorithm':
train_run.properties['run_algorithm'],
'valid_score':
train_run.properties['score'],
'primary_metric':
train_run.properties['primary_metric']})
run.log("run_algorithm", run.tags['run_algorithm'])
return run

View File

@@ -94,7 +94,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -263,7 +263,9 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"You will need to create a [compute target](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute) for your AutoML run. In this tutorial, you create AmlCompute as your training compute resource."
"You will need to create a [compute target](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute) for your AutoML run. In this tutorial, you create AmlCompute as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{
@@ -283,7 +285,7 @@
" compute_target = ComputeTarget(workspace=ws, name=amlcompute_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2',\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_DS12_V2',\n",
" max_nodes=6)\n",
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, compute_config)\n",
"\n",

View File

@@ -24,20 +24,20 @@
"_**Orange Juice Sales Forecasting**_\n",
"\n",
"## Contents\n",
"1. [Introduction](#Introduction)\n",
"1. [Setup](#Setup)\n",
"1. [Compute](#Compute)\n",
"1. [Data](#Data)\n",
"1. [Train](#Train)\n",
"1. [Predict](#Predict)\n",
"1. [Operationalize](#Operationalize)"
"1. [Introduction](#introduction)\n",
"1. [Setup](#setup)\n",
"1. [Compute](#compute)\n",
"1. [Data](#data)\n",
"1. [Train](#train)\n",
"1. [Forecast](#forecast)\n",
"1. [Operationalize](#operationalize)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Introduction\n",
"## Introduction<a id=\"introduction\"></a>\n",
"In this example, we use AutoML to train, select, and operationalize a time-series forecasting model for multiple time-series.\n",
"\n",
"Make sure you have executed the [configuration notebook](../../../configuration.ipynb) before running this notebook.\n",
@@ -49,7 +49,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"## Setup"
"## Setup<a id=\"setup\"></a>"
]
},
{
@@ -82,7 +82,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -122,8 +122,11 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"## Compute\n",
"## Compute<a id=\"compute\"></a>\n",
"You will need to create a [compute target](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute) for your AutoML run. In this tutorial, you create AmlCompute as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"#### Creation of AmlCompute takes approximately 5 minutes. \n",
"If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."
@@ -146,7 +149,7 @@
" compute_target = ComputeTarget(workspace=ws, name=amlcompute_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2',\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D12_V2',\n",
" max_nodes=6)\n",
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, compute_config)\n",
"\n",
@@ -157,7 +160,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"## Data\n",
"## Data<a id=\"data\"></a>\n",
"You are now ready to load the historical orange juice sales data. We will load the CSV file into a plain pandas DataFrame; the time column in the CSV is called _WeekStarting_, so it will be specially parsed into the datetime type."
]
},
@@ -284,7 +287,8 @@
"outputs": [],
"source": [
"from azureml.core.dataset import Dataset\n",
"train_dataset = Dataset.Tabular.from_delimited_files(path=datastore.path('dataset/dominicks_OJ_train.csv'))"
"train_dataset = Dataset.Tabular.from_delimited_files(path=datastore.path('dataset/dominicks_OJ_train.csv'))\n",
"test_dataset = Dataset.Tabular.from_delimited_files(path=datastore.path('dataset/dominicks_OJ_test.csv'))"
]
},
{
@@ -377,7 +381,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"## Train\n",
"## Train<a id=\"train\"></a>\n",
"\n",
"The [AutoMLConfig](https://docs.microsoft.com/en-us/python/api/azureml-train-automl-client/azureml.train.automl.automlconfig.automlconfig?view=azure-ml-py) object defines the settings and data for an AutoML training job. Here, we set necessary inputs like the task type, the number of AutoML iterations to try, the training data, and cross-validation parameters.\n",
"\n",
@@ -518,9 +522,11 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"# Forecasting\n",
"# Forecast<a id=\"forecast\"></a>\n",
"\n",
"Now that we have retrieved the best pipeline/model, it can be used to make predictions on test data. First, we remove the target values from the test set:"
"Now that we have retrieved the best pipeline/model, it can be used to make predictions on test data. We will do batch scoring on the test dataset which should have the same schema as training dataset.\n",
"\n",
"The inference will run on a remote compute. In this example, it will re-use the training compute."
]
},
{
@@ -529,17 +535,15 @@
"metadata": {},
"outputs": [],
"source": [
"X_test = test\n",
"y_test = X_test.pop(target_column_name).values"
"test_experiment = Experiment(ws, experiment_name + \"_inference\")"
]
},
{
"cell_type": "code",
"execution_count": null,
"cell_type": "markdown",
"metadata": {},
"outputs": [],
"source": [
"X_test.head()"
"### Retreiving forecasts from the model\n",
"We have created a function called `run_forecast` that submits the test data to the best model determined during the training run and retrieves forecasts. This function uses a helper script `forecasting_script` which is uploaded and expecuted on the remote compute."
]
},
{
@@ -555,18 +559,16 @@
"metadata": {},
"outputs": [],
"source": [
"# forecast returns the predictions and the featurized data, aligned to X_test.\n",
"# This contains the assumptions that were made in the forecast\n",
"y_predictions, X_trans = fitted_model.forecast(X_test)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"If you are used to scikit pipelines, perhaps you expected `predict(X_test)`. However, forecasting requires a more general interface that also supplies the past target `y` values. Please use `forecast(X,y)` as `predict(X)` is reserved for internal purposes on forecasting models.\n",
"from run_forecast import run_remote_inference\n",
"remote_run_infer = run_remote_inference(test_experiment=test_experiment, \n",
" compute_target=compute_target,\n",
" train_run=best_run,\n",
" test_dataset=test_dataset,\n",
" target_column_name=target_column_name)\n",
"remote_run_infer.wait_for_completion(show_output=False)\n",
"\n",
"The [forecast function notebook](../forecasting-forecast-function/auto-ml-forecasting-function.ipynb)."
"# download the forecast file to the local machine\n",
"remote_run_infer.download_file('outputs/predictions.csv', 'predictions.csv')"
]
},
{
@@ -586,8 +588,9 @@
"metadata": {},
"outputs": [],
"source": [
"assign_dict = {'predicted': y_predictions, target_column_name: y_test}\n",
"df_all = X_test.assign(**assign_dict)"
"# load forecast data frame\n",
"fcst_df = pd.read_csv('predictions.csv', parse_dates=[time_column_name])\n",
"fcst_df.head()"
]
},
{
@@ -602,8 +605,8 @@
"\n",
"# use automl scoring module\n",
"scores = scoring.score_regression(\n",
" y_test=df_all[target_column_name],\n",
" y_pred=df_all['predicted'],\n",
" y_test=fcst_df[target_column_name],\n",
" y_pred=fcst_df['predicted'],\n",
" metrics=list(constants.Metric.SCALAR_REGRESSION_SET))\n",
"\n",
"print(\"[Test data scores]\\n\")\n",
@@ -612,8 +615,8 @@
" \n",
"# Plot outputs\n",
"%matplotlib inline\n",
"test_pred = plt.scatter(df_all[target_column_name], df_all['predicted'], color='b')\n",
"test_test = plt.scatter(df_all[target_column_name], df_all[target_column_name], color='g')\n",
"test_pred = plt.scatter(fcst_df[target_column_name], fcst_df['predicted'], color='b')\n",
"test_test = plt.scatter(fcst_df[target_column_name], fcst_df[target_column_name], color='g')\n",
"plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
"plt.show()"
]
@@ -622,7 +625,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"# Operationalize"
"# Operationalize<a id=\"operationalize\"></a>"
]
},
{
@@ -720,12 +723,13 @@
"outputs": [],
"source": [
"import json\n",
"X_query = X_test.copy()\n",
"X_query = test.copy()\n",
"X_query.pop(target_column_name)\n",
"# We have to convert datetime to string, because Timestamps cannot be serialized to JSON.\n",
"X_query[time_column_name] = X_query[time_column_name].astype(str)\n",
"# The Service object accept the complex dictionary, which is internally converted to JSON string.\n",
"# The section 'data' contains the data frame in the form of dictionary.\n",
"test_sample = json.dumps({'data': X_query.to_dict(orient='records')})\n",
"test_sample = json.dumps({\"data\": json.loads(X_query.to_json(orient=\"records\"))})\n",
"response = aci_service.run(input_data = test_sample)\n",
"# translate from networkese to datascientese\n",
"try: \n",
@@ -802,7 +806,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.8"
"version": "3.6.9"
},
"tags": [
"None"

View File

@@ -0,0 +1,89 @@
"""
This is the script that is executed on the compute instance. It relies
on the model.pkl file which is uploaded along with this script to the
compute instance.
"""
import argparse
import pandas as pd
import numpy as np
from azureml.core import Dataset, Run
from azureml.automl.core.shared.constants import TimeSeriesInternal
from sklearn.externals import joblib
from pandas.tseries.frequencies import to_offset
def align_outputs(y_predicted, X_trans, X_test, y_test, target_column_name,
predicted_column_name='predicted',
horizon_colname='horizon_origin'):
"""
Demonstrates how to get the output aligned to the inputs
using pandas indexes. Helps understand what happened if
the output's shape differs from the input shape, or if
the data got re-sorted by time and grain during forecasting.
Typical causes of misalignment are:
* we predicted some periods that were missing in actuals -> drop from eval
* model was asked to predict past max_horizon -> increase max horizon
* data at start of X_test was needed for lags -> provide previous periods
"""
if (horizon_colname in X_trans):
df_fcst = pd.DataFrame({predicted_column_name: y_predicted,
horizon_colname: X_trans[horizon_colname]})
else:
df_fcst = pd.DataFrame({predicted_column_name: y_predicted})
# y and X outputs are aligned by forecast() function contract
df_fcst.index = X_trans.index
# align original X_test to y_test
X_test_full = X_test.copy()
X_test_full[target_column_name] = y_test
# X_test_full's index does not include origin, so reset for merge
df_fcst.reset_index(inplace=True)
X_test_full = X_test_full.reset_index().drop(columns='index')
together = df_fcst.merge(X_test_full, how='right')
# drop rows where prediction or actuals are nan
# happens because of missing actuals
# or at edges of time due to lags/rolling windows
clean = together[together[[target_column_name,
predicted_column_name]].notnull().all(axis=1)]
return(clean)
parser = argparse.ArgumentParser()
parser.add_argument(
'--target_column_name', type=str, dest='target_column_name',
help='Target Column Name')
parser.add_argument(
'--test_dataset', type=str, dest='test_dataset',
help='Test Dataset')
args = parser.parse_args()
target_column_name = args.target_column_name
test_dataset_id = args.test_dataset
run = Run.get_context()
ws = run.experiment.workspace
# get the input dataset by id
test_dataset = Dataset.get_by_id(ws, id=test_dataset_id)
X_test = test_dataset.to_pandas_dataframe().reset_index(drop=True)
y_test = X_test.pop(target_column_name).values
# generate forecast
fitted_model = joblib.load('model.pkl')
y_predictions, X_trans = fitted_model.forecast(X_test)
# align output
df_all = align_outputs(y_predictions, X_trans, X_test, y_test, target_column_name)
file_name = 'outputs/predictions.csv'
export_csv = df_all.to_csv(file_name, header=True, index=False) # added Index
# Upload the predictions into artifacts
run.upload_file(name=file_name, path_or_stream=file_name)

View File

@@ -0,0 +1,38 @@
import os
import shutil
from azureml.core import ScriptRunConfig
def run_remote_inference(test_experiment, compute_target, train_run,
test_dataset, target_column_name, inference_folder='./forecast'):
# Create local directory to copy the model.pkl and forecsting_script.py files into.
# These files will be uploaded to and executed on the compute instance.
os.makedirs(inference_folder, exist_ok=True)
shutil.copy('forecasting_script.py', inference_folder)
train_run.download_file('outputs/model.pkl',
os.path.join(inference_folder, 'model.pkl'))
inference_env = train_run.get_environment()
config = ScriptRunConfig(source_directory=inference_folder,
script='forecasting_script.py',
arguments=['--target_column_name',
target_column_name,
'--test_dataset',
test_dataset.as_named_input(test_dataset.name)],
compute_target=compute_target,
environment=inference_env)
run = test_experiment.submit(config,
tags={'training_run_id':
train_run.id,
'run_algorithm':
train_run.properties['run_algorithm'],
'valid_score':
train_run.properties['score'],
'primary_metric':
train_run.properties['primary_metric']})
run.log("run_algorithm", run.tags['run_algorithm'])
return run

View File

@@ -96,7 +96,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -436,7 +436,8 @@
"\n",
"automl_explainer_setup_obj = automl_setup_model_explanations(fitted_model, X=X_train, \n",
" X_test=X_test, y=y_train, \n",
" task='classification')"
" task='classification',\n",
" automl_run=automl_run)"
]
},
{
@@ -453,11 +454,10 @@
"metadata": {},
"outputs": [],
"source": [
"from interpret.ext.glassbox import LGBMExplainableModel\n",
"from azureml.interpret.mimic_wrapper import MimicWrapper\n",
"explainer = MimicWrapper(ws, automl_explainer_setup_obj.automl_estimator,\n",
" explainable_model=automl_explainer_setup_obj.surrogate_model, \n",
" init_dataset=automl_explainer_setup_obj.X_transform, run=automl_run,\n",
" init_dataset=automl_explainer_setup_obj.X_transform, run=automl_explainer_setup_obj.automl_run,\n",
" features=automl_explainer_setup_obj.engineered_feature_names, \n",
" feature_maps=[automl_explainer_setup_obj.feature_map],\n",
" classes=automl_explainer_setup_obj.classes,\n",

View File

@@ -96,7 +96,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -130,6 +130,8 @@
"### Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for your AutoML run. In this tutorial, you create `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Creation of AmlCompute takes approximately 5 minutes.** If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."
@@ -152,7 +154,7 @@
" compute_target = ComputeTarget(workspace=ws, name=amlcompute_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2',\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_DS12_V2',\n",
" max_nodes=4)\n",
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, compute_config)\n",
"\n",

View File

@@ -50,11 +50,13 @@ X_test = test_dataset.drop_columns(columns=['<<target_column_name>>'])
# Setup the class for explaining the AutoML models
automl_explainer_setup_obj = automl_setup_model_explanations(fitted_model, '<<task>>',
X=X_train, X_test=X_test,
y=y_train)
y=y_train,
automl_run=automl_run)
# Initialize the Mimic Explainer
explainer = MimicWrapper(ws, automl_explainer_setup_obj.automl_estimator, LGBMExplainableModel,
init_dataset=automl_explainer_setup_obj.X_transform, run=automl_run,
init_dataset=automl_explainer_setup_obj.X_transform,
run=automl_explainer_setup_obj.automl_run,
features=automl_explainer_setup_obj.engineered_feature_names,
feature_maps=[automl_explainer_setup_obj.feature_map],
classes=automl_explainer_setup_obj.classes)

View File

@@ -92,7 +92,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"This notebook was created using version 1.27.0 of the Azure ML SDK\")\n",
"print(\"This notebook was created using version 1.32.0 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
]
},
@@ -145,7 +145,7 @@
" compute_target = ComputeTarget(workspace=ws, name=cpu_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2',\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_DS12_V2',\n",
" max_nodes=4)\n",
" compute_target = ComputeTarget.create(ws, cpu_cluster_name, compute_config)\n",
"\n",

View File

@@ -350,32 +350,6 @@
"displayHTML(\"<a href={} target='_blank'>Azure Portal: {}</a>\".format(local_run.get_portal_url(), local_run.id))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Retrieve All Child Runs after the experiment is completed (in portal)\n",
"You can also use SDK methods to fetch all the child runs and see individual metrics that we log."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"children = list(local_run.get_children())\n",
"metricslist = {}\n",
"for run in children:\n",
" properties = run.get_properties()\n",
" #print(properties)\n",
" metrics = {k: v for k, v in run.get_metrics().items() if isinstance(v, float)} \n",
" metricslist[int(properties['iteration'])] = metrics\n",
"\n",
"rundata = pd.DataFrame(metricslist).sort_index(1)\n",
"rundata"
]
},
{
"cell_type": "markdown",
"metadata": {},

View File

@@ -352,32 +352,6 @@
"displayHTML(\"<a href={} target='_blank'>Azure Portal: {}</a>\".format(local_run.get_portal_url(), local_run.id))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Retrieve All Child Runs after the experiment is completed (in portal)\n",
"You can also use SDK methods to fetch all the child runs and see individual metrics that we log."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"children = list(local_run.get_children())\n",
"metricslist = {}\n",
"for run in children:\n",
" properties = run.get_properties()\n",
" #print(properties)\n",
" metrics = {k: v for k, v in run.get_metrics().items() if isinstance(v, float)} \n",
" metricslist[int(properties['iteration'])] = metrics\n",
"\n",
"rundata = pd.DataFrame(metricslist).sort_index(1)\n",
"rundata"
]
},
{
"cell_type": "markdown",
"metadata": {},

View File

@@ -0,0 +1,186 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Copyright (c) Microsoft Corporation. All rights reserved. \n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/azure-arcadia/Synapse_Job_Scala_Support.png)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Get AML workspace which has synapse spark pool attached"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Workspace, Experiment, Dataset, Environment\n",
"\n",
"ws = Workspace.from_config()\n",
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep = '\\n')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Leverage ScriptRunConfig to submit scala job to an attached synapse spark cluster"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Prepare data"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.datastore import Datastore\n",
"# Use the default blob storage\n",
"def_blob_store = Datastore(ws, \"workspaceblobstore\")\n",
"\n",
"# We are uploading a sample file in the local directory to be used as a datasource\n",
"file_name = \"shakespeare.txt\"\n",
"def_blob_store.upload_files(files=[\"./{}\".format(file_name)], overwrite=False)\n",
"\n",
"# Create file dataset\n",
"file_dataset = Dataset.File.from_files(path=[(def_blob_store, file_name)])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.runconfig import RunConfiguration\n",
"from azureml.data import HDFSOutputDatasetConfig\n",
"import uuid\n",
"\n",
"run_config = RunConfiguration(framework=\"pyspark\")\n",
"run_config.target = \"link-pool\"\n",
"run_config.spark.configuration[\"spark.driver.memory\"] = \"2g\"\n",
"run_config.spark.configuration[\"spark.driver.cores\"] = 2\n",
"run_config.spark.configuration[\"spark.executor.memory\"] = \"2g\"\n",
"run_config.spark.configuration[\"spark.executor.cores\"] = 1\n",
"run_config.spark.configuration[\"spark.executor.instances\"] = 1\n",
"# This can be removed if you are using local jars in source folder\n",
"run_config.spark.configuration[\"spark.yarn.dist.jars\"]=\"wasbs://synapse@azuremlexamples.blob.core.windows.net/shared/wordcount.jar\"\n",
"\n",
"dir_name = \"wordcount-{}\".format(str(uuid.uuid4()))\n",
"input = file_dataset.as_named_input(\"input\").as_hdfs()\n",
"output = HDFSOutputDatasetConfig(destination=(ws.get_default_datastore(), \"{}/result\".format(dir_name)))\n",
"\n",
"from azureml.core import ScriptRunConfig\n",
"args = ['--input', input, '--output', output]\n",
"script_run_config = ScriptRunConfig(source_directory = '.',\n",
" script= 'start_script.py',\n",
" arguments= args,\n",
" run_config = run_config)\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Experiment\n",
"exp = Experiment(workspace=ws, name='synapse-spark')\n",
"run = exp.submit(config=script_run_config)\n",
"run"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Leverage SynapseSparkStep in an AML pipeline to add dataprep step on synapse spark cluster"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.pipeline.core import Pipeline\n",
"from azureml.pipeline.steps import SynapseSparkStep\n",
"\n",
"configs = {}\n",
"#configs[\"spark.yarn.dist.jars\"] = \"wasbs://synapse@azuremlexamples.blob.core.windows.net/shared/wordcount.jar\"\n",
"step_1 = SynapseSparkStep(name = 'synapse-spark',\n",
" file = 'start_script.py',\n",
" jars = \"wasbs://synapse@azuremlexamples.blob.core.windows.net/shared/wordcount.jar\",\n",
" source_directory=\".\",\n",
" arguments = args,\n",
" compute_target = 'link-pool',\n",
" driver_memory = \"2g\",\n",
" driver_cores = 2,\n",
" executor_memory = \"2g\",\n",
" executor_cores = 1,\n",
" num_executors = 1,\n",
" conf = configs)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"pipeline = Pipeline(workspace=ws, steps=[step_1])\n",
"pipeline_run = pipeline.submit('synapse-pipeline', regenerate_outputs=True)"
]
}
],
"metadata": {
"authors": [
{
"name": "feli1"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.5"
},
"nteract": {
"version": "0.28.0"
}
},
"nbformat": 4,
"nbformat_minor": 2
}

View File

@@ -0,0 +1,240 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Copyright (c) Microsoft Corporation. All rights reserved. \n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/azure-arcadia/Synapse_Session_Scala_Support.png)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Interactive Spark Session on Synapse Spark Pool"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"!pip install -U \"azureml-synapse\""
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"For JupyterLab, please additionally run:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"!jupyter lab build --minimize=False"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## PLEASE restart kernel and then refresh web page before starting spark session."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## 0. Magic Usage"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"execution": {
"iopub.execute_input": "2020-06-05T03:22:14.965395Z",
"iopub.status.busy": "2020-06-05T03:22:14.965395Z",
"iopub.status.idle": "2020-06-05T03:22:14.970398Z",
"shell.execute_reply": "2020-06-05T03:22:14.969397Z",
"shell.execute_reply.started": "2020-06-05T03:22:14.965395Z"
},
"gather": {
"logged": 1615594584642
}
},
"outputs": [],
"source": [
"# show help\n",
"%synapse ?"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# 1. Start Synapse Session"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"gather": {
"logged": 1615577715289
}
},
"outputs": [],
"source": [
"%synapse start -c linktestpool --start-timeout 1000"
]
},
{
"cell_type": "markdown",
"metadata": {
"nteract": {
"transient": {
"deleting": false
}
}
},
"source": [
"# 2. Use Scala"
]
},
{
"cell_type": "markdown",
"metadata": {
"nteract": {
"transient": {
"deleting": false
}
}
},
"source": [
"## (1) Read Data"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"jupyter": {
"outputs_hidden": false,
"source_hidden": false
},
"nteract": {
"transient": {
"deleting": false
}
}
},
"outputs": [],
"source": [
"%%synapse scala\n",
"\n",
"var df = spark.read.option(\"header\", \"true\").csv(\"wasbs://demo@dprepdata.blob.core.windows.net/Titanic.csv\")\n",
"df.show(5)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## (2) Use Scala Sql"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"jupyter": {
"outputs_hidden": false,
"source_hidden": false
},
"nteract": {
"transient": {
"deleting": false
}
}
},
"outputs": [],
"source": [
"%%synapse scala\n",
"\n",
"df.createOrReplaceTempView(\"titanic\")\n",
"var sqlDF = spark.sql(\"SELECT Name, Fare from titanic\")\n",
"sqlDF.show(5)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Stop Session"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"jupyter": {
"outputs_hidden": false,
"source_hidden": false
},
"nteract": {
"transient": {
"deleting": false
}
}
},
"outputs": [],
"source": [
"%synapse stop"
]
}
],
"metadata": {
"authors": [
{
"name": "feli1"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.5"
},
"nteract": {
"version": "0.28.0"
}
},
"nbformat": 4,
"nbformat_minor": 4
}

View File

@@ -0,0 +1,270 @@
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<<THIS ELECTRONIC VERSION OF THE COMPLETE WORKS OF WILLIAM
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1609
THE SONNETS
by William Shakespeare
THE END
<<THIS ELECTRONIC VERSION OF THE COMPLETE WORKS OF WILLIAM
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End of this Etext of The Complete Works of William Shakespeare

View File

@@ -46,7 +46,7 @@
"import azureml.core\n",
"from azureml.core import Workspace, Experiment\n",
"from azureml.core import LinkedService, SynapseWorkspaceLinkedServiceConfiguration\n",
"from azureml.core.compute import ComputeTarget, SynapseCompute\n",
"from azureml.core.compute import ComputeTarget, AmlCompute, SynapseCompute\n",
"from azureml.exceptions import ComputeTargetException\n",
"from azureml.data import HDFSOutputDatasetConfig\n",
"from azureml.core.datastore import Datastore\n",

View File

@@ -0,0 +1,18 @@
from pyspark.sql import SparkSession
import argparse
parser = argparse.ArgumentParser()
parser.add_argument("--input", default="")
parser.add_argument("--output", default="")
args, unparsed = parser.parse_known_args()
spark = SparkSession.builder.getOrCreate()
sc = spark.sparkContext
arr = sc._gateway.new_array(sc._jvm.java.lang.String, 2)
arr[0] = args.input
arr[1] = args.output
obj = sc._jvm.WordCount
obj.main(arr)

View File

@@ -157,7 +157,9 @@
"metadata": {},
"source": [
"## Provision the AKS Cluster\n",
"If you already have an AKS cluster attached to this workspace, skip the step below and provide the name of the cluster."
"If you already have an AKS cluster attached to this workspace, skip the step below and provide the name of the cluster.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -267,7 +267,9 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"### Create AKS compute if you haven't done so."
"### Create AKS compute if you haven't done so.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -211,6 +211,8 @@
"# Provision the AKS Cluster with SSL\n",
"This is a one time setup. You can reuse this cluster for multiple deployments after it has been created. If you delete the cluster or the resource group that contains it, then you would have to recreate it.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"See code snippet below. Check the documentation [here](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-secure-web-service) for more details"
]
},

View File

@@ -325,7 +325,9 @@
"metadata": {},
"source": [
"# Provision the AKS Cluster\n",
"This is a one time setup. You can reuse this cluster for multiple deployments after it has been created. If you delete the cluster or the resource group that contains it, then you would have to recreate it."
"This is a one time setup. You can reuse this cluster for multiple deployments after it has been created. If you delete the cluster or the resource group that contains it, then you would have to recreate it.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -2,23 +2,22 @@
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
"\n",
"Licensed under the MIT License."
]
],
"metadata": {}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/deployment/deploy-to-cloud/model-register-and-deploy.png)"
]
],
"metadata": {}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Register Spark Model and deploy as Webservice\n",
"\n",
@@ -26,120 +25,128 @@
"\n",
" 1. Register Spark Model\n",
" 2. Deploy Spark Model as Webservice"
]
],
"metadata": {}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Prerequisites\n",
"If you are using an Azure Machine Learning Notebook VM, you are all set. Otherwise, make sure you go through the [configuration](../../../configuration.ipynb) Notebook first if you haven't."
]
],
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Check core SDK version number\n",
"import azureml.core\n",
"\n",
"# Check core SDK version number\r\n",
"import azureml.core\r\n",
"\r\n",
"print(\"SDK version:\", azureml.core.VERSION)"
]
],
"outputs": [],
"metadata": {}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Initialize Workspace\n",
"\n",
"Initialize a workspace object from persisted configuration."
]
],
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"source": [
"from azureml.core import Workspace\r\n",
"\r\n",
"ws = Workspace.from_config()\r\n",
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep='\\n')"
],
"outputs": [],
"metadata": {
"tags": [
"create workspace"
]
},
"outputs": [],
"source": [
"from azureml.core import Workspace\n",
"\n",
"ws = Workspace.from_config()\n",
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep='\\n')"
]
}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Register Model"
]
],
"metadata": {}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"You can add tags and descriptions to your Models. Note you need to have a `iris.model` file in the current directory. This model file is generated using [train in spark](../training/train-in-spark/train-in-spark.ipynb) notebook. The below call registers that file as a Model with the same name `iris.model` in the workspace.\n",
"\n",
"Using tags, you can track useful information such as the name and version of the machine learning library used to train the model. Note that tags must be alphanumeric."
]
],
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"source": [
"from azureml.core.model import Model\r\n",
"\r\n",
"model = Model.register(model_path=\"iris.model\",\r\n",
" model_name=\"iris.model\",\r\n",
" tags={'type': \"regression\"},\r\n",
" description=\"Logistic regression model to predict iris species\",\r\n",
" workspace=ws)"
],
"outputs": [],
"metadata": {
"tags": [
"register model from file"
]
},
"outputs": [],
"source": [
"from azureml.core.model import Model\n",
"\n",
"model = Model.register(model_path=\"iris.model\",\n",
" model_name=\"iris.model\",\n",
" tags={'type': \"regression\"},\n",
" description=\"Logistic regression model to predict iris species\",\n",
" workspace=ws)"
]
}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Fetch Environment"
]
],
"metadata": {}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"You can now create and/or use an Environment object when deploying a Webservice. The Environment can have been previously registered with your Workspace, or it will be registered with it as a part of the Webservice deployment.\n",
"\n",
"In this notebook, we will be using 'AzureML-PySpark-MmlSpark-0.15', a curated environment.\n",
"\n",
"More information can be found in our [using environments notebook](../training/using-environments/using-environments.ipynb)."
]
],
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Environment\n",
"\n",
"env = Environment.get(ws, name='AzureML-PySpark-MmlSpark-0.15')\n"
]
"from azureml.core import Environment\r\n",
"from azureml.core.environment import SparkPackage\r\n",
"from azureml.core.conda_dependencies import CondaDependencies\r\n",
"\r\n",
"myenv = Environment('my-pyspark-environment')\r\n",
"myenv.docker.base_image = \"mcr.microsoft.com/mmlspark/release:0.15\"\r\n",
"myenv.inferencing_stack_version = \"latest\"\r\n",
"myenv.python.conda_dependencies = CondaDependencies.create(pip_packages=[\"azureml-core\",\"azureml-defaults\",\"azureml-telemetry\",\"azureml-train-restclients-hyperdrive\",\"azureml-train-core\"], python_version=\"3.6.2\")\r\n",
"myenv.python.conda_dependencies.add_channel(\"conda-forge\")\r\n",
"myenv.spark.packages = [SparkPackage(\"com.microsoft.ml.spark\", \"mmlspark_2.11\", \"0.15\"), SparkPackage(\"com.microsoft.azure\", \"azure-storage\", \"2.0.0\"), SparkPackage(\"org.apache.hadoop\", \"hadoop-azure\", \"2.7.0\")]\r\n",
"myenv.spark.repositories = [\"https://mmlspark.azureedge.net/maven\"]\r\n"
],
"outputs": [],
"metadata": {}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Create Inference Configuration\n",
"\n",
@@ -157,109 +164,109 @@
" - source_directory = holds source path as string, this entire folder gets added in image so its really easy to access any files within this folder or subfolder\n",
" - entry_script = contains logic specific to initializing your model and running predictions\n",
" - environment = An environment object to use for the deployment. Doesn't have to be registered"
]
],
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"source": [
"from azureml.core.model import InferenceConfig\r\n",
"\r\n",
"inference_config = InferenceConfig(entry_script=\"score.py\", environment=myenv)"
],
"outputs": [],
"metadata": {
"tags": [
"create image"
]
},
"outputs": [],
"source": [
"from azureml.core.model import InferenceConfig\n",
"\n",
"inference_config = InferenceConfig(entry_script=\"score.py\", environment=env)"
]
}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Deploy Model as Webservice on Azure Container Instance\n",
"\n",
"Note that the service creation can take few minutes."
]
],
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"source": [
"from azureml.core.webservice import AciWebservice, Webservice\r\n",
"from azureml.exceptions import WebserviceException\r\n",
"\r\n",
"deployment_config = AciWebservice.deploy_configuration(cpu_cores=1, memory_gb=1)\r\n",
"aci_service_name = 'aciservice1'\r\n",
"\r\n",
"try:\r\n",
" # if you want to get existing service below is the command\r\n",
" # since aci name needs to be unique in subscription deleting existing aci if any\r\n",
" # we use aci_service_name to create azure aci\r\n",
" service = Webservice(ws, name=aci_service_name)\r\n",
" if service:\r\n",
" service.delete()\r\n",
"except WebserviceException as e:\r\n",
" print()\r\n",
"\r\n",
"service = Model.deploy(ws, aci_service_name, [model], inference_config, deployment_config)\r\n",
"\r\n",
"service.wait_for_deployment(True)\r\n",
"print(service.state)"
],
"outputs": [],
"metadata": {
"tags": [
"azuremlexception-remarks-sample"
]
},
"outputs": [],
"source": [
"from azureml.core.webservice import AciWebservice, Webservice\n",
"from azureml.exceptions import WebserviceException\n",
"\n",
"deployment_config = AciWebservice.deploy_configuration(cpu_cores=1, memory_gb=1)\n",
"aci_service_name = 'aciservice1'\n",
"\n",
"try:\n",
" # if you want to get existing service below is the command\n",
" # since aci name needs to be unique in subscription deleting existing aci if any\n",
" # we use aci_service_name to create azure aci\n",
" service = Webservice(ws, name=aci_service_name)\n",
" if service:\n",
" service.delete()\n",
"except WebserviceException as e:\n",
" print()\n",
"\n",
"service = Model.deploy(ws, aci_service_name, [model], inference_config, deployment_config)\n",
"\n",
"service.wait_for_deployment(True)\n",
"print(service.state)"
]
}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Test web service"
]
],
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import json\n",
"test_sample = json.dumps({'features':{'type':1,'values':[4.3,3.0,1.1,0.1]},'label':2.0})\n",
"\n",
"test_sample_encoded = bytes(test_sample, encoding='utf8')\n",
"prediction = service.run(input_data=test_sample_encoded)\n",
"import json\r\n",
"test_sample = json.dumps({'features':{'type':1,'values':[4.3,3.0,1.1,0.1]},'label':2.0})\r\n",
"\r\n",
"test_sample_encoded = bytes(test_sample, encoding='utf8')\r\n",
"prediction = service.run(input_data=test_sample_encoded)\r\n",
"print(prediction)"
]
],
"outputs": [],
"metadata": {}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Delete ACI to clean up"
]
],
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"source": [
"service.delete()"
],
"outputs": [],
"metadata": {
"tags": [
"deploy service",
"aci"
]
},
"outputs": [],
"source": [
"service.delete()"
]
}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Model Profiling\n",
"\n",
@@ -271,11 +278,11 @@
"profiling_results = profile.get_results()\n",
"print(profiling_results)\n",
"```"
]
],
"metadata": {}
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Model Packaging\n",
"\n",
@@ -296,7 +303,8 @@
"package.wait_for_creation(show_output=True)\n",
"package.save(\"./local_context_dir\")\n",
"```"
]
],
"metadata": {}
}
],
"metadata": {

View File

@@ -203,6 +203,8 @@
"source": [
"### Provision a compute target\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"You can provision an AmlCompute resource by simply defining two parameters thanks to smart defaults. By default it autoscales from 0 nodes and provisions dedicated VMs to run your job in a container. This is useful when you want to continously re-use the same target, debug it between jobs or simply share the resource with other users of your workspace.\n",
"\n",
"* `vm_size`: VM family of the nodes provisioned by AmlCompute. Simply choose from the supported_vmsizes() above\n",
@@ -215,7 +217,6 @@
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.compute import ComputeTarget, AmlCompute\n",
"from azureml.core.compute_target import ComputeTargetException\n",
"\n",
"# Choose a name for your CPU cluster\n",
@@ -265,7 +266,7 @@
"available_packages = pkg_resources.working_set\n",
"sklearn_ver = None\n",
"pandas_ver = None\n",
"for dist in available_packages:\n",
"for dist in list(available_packages):\n",
" if dist.key == 'scikit-learn':\n",
" sklearn_ver = dist.version\n",
" elif dist.key == 'pandas':\n",
@@ -284,7 +285,6 @@
"azureml_pip_packages.extend([sklearn_dep, pandas_dep])\n",
"run_config.environment.python.conda_dependencies = CondaDependencies.create(pip_packages=azureml_pip_packages)\n",
"\n",
"from azureml.core import Run\n",
"from azureml.core import ScriptRunConfig\n",
"\n",
"src = ScriptRunConfig(source_directory=project_folder, \n",
@@ -414,7 +414,6 @@
"outputs": [],
"source": [
"# Retrieve x_test for visualization\n",
"import joblib\n",
"x_test_path = './x_test_boston_housing.pkl'\n",
"run.download_file('x_test_boston_housing.pkl', output_file_path=x_test_path)"
]
@@ -442,7 +441,7 @@
"metadata": {},
"outputs": [],
"source": [
"from interpret_community.widget import ExplanationDashboard"
"from raiwidgets import ExplanationDashboard"
]
},
{
@@ -451,7 +450,7 @@
"metadata": {},
"outputs": [],
"source": [
"ExplanationDashboard(global_explanation, original_model, datasetX=x_test)"
"ExplanationDashboard(global_explanation, original_model, dataset=x_test)"
]
},
{

View File

@@ -11,3 +11,4 @@ dependencies:
- matplotlib
- azureml-dataset-runtime
- ipywidgets
- raiwidgets~=0.7.0

View File

@@ -87,7 +87,6 @@
"from sklearn.preprocessing import StandardScaler, OneHotEncoder\n",
"from sklearn.svm import SVC\n",
"import pandas as pd\n",
"import numpy as np\n",
"\n",
"# Explainers:\n",
"# 1. SHAP Tabular Explainer\n",
@@ -533,7 +532,7 @@
"metadata": {},
"outputs": [],
"source": [
"from interpret_community.widget import ExplanationDashboard"
"from raiwidgets import ExplanationDashboard"
]
},
{
@@ -542,7 +541,7 @@
"metadata": {},
"outputs": [],
"source": [
"ExplanationDashboard(downloaded_global_explanation, model, datasetX=x_test)"
"ExplanationDashboard(downloaded_global_explanation, model, dataset=x_test)"
]
},
{

View File

@@ -10,3 +10,4 @@ dependencies:
- ipython
- matplotlib
- ipywidgets
- raiwidgets~=0.7.0

View File

@@ -170,7 +170,6 @@
"from sklearn.preprocessing import StandardScaler, OneHotEncoder\n",
"from sklearn.impute import SimpleImputer\n",
"from sklearn.pipeline import Pipeline\n",
"from sklearn.linear_model import LogisticRegression\n",
"from sklearn.ensemble import RandomForestClassifier\n",
"\n",
"from interpret.ext.blackbox import TabularExplainer\n",
@@ -221,7 +220,6 @@
" ('classifier', RandomForestClassifier())])\n",
"\n",
"# Split data into train and test\n",
"from sklearn.model_selection import train_test_split\n",
"x_train, x_test, y_train, y_test = train_test_split(attritionXData,\n",
" target,\n",
" test_size=0.2,\n",
@@ -296,7 +294,7 @@
"metadata": {},
"outputs": [],
"source": [
"from interpret_community.widget import ExplanationDashboard"
"from raiwidgets import ExplanationDashboard"
]
},
{
@@ -305,7 +303,7 @@
"metadata": {},
"outputs": [],
"source": [
"ExplanationDashboard(global_explanation, clf, datasetX=x_test)"
"ExplanationDashboard(global_explanation, clf, dataset=x_test)"
]
},
{
@@ -356,8 +354,7 @@
"# the submitted job is run in. Note the remote environment(s) needs to be similar to the local\n",
"# environment, otherwise if a model is trained or deployed in a different environment this can\n",
"# cause errors. Please take extra care when specifying your dependencies in a production environment.\n",
"myenv = CondaDependencies.create(pip_packages=['pyyaml', sklearn_dep, pandas_dep] + azureml_pip_packages,\n",
" pin_sdk_version=False)\n",
"myenv = CondaDependencies.create(pip_packages=['pyyaml', sklearn_dep, pandas_dep] + azureml_pip_packages)\n",
"\n",
"with open(\"myenv.yml\",\"w\") as f:\n",
" f.write(myenv.serialize_to_string())\n",
@@ -383,10 +380,8 @@
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.webservice import Webservice\n",
"from azureml.core.model import InferenceConfig\n",
"from azureml.core.webservice import AciWebservice\n",
"from azureml.core.model import Model\n",
"from azureml.core.environment import Environment\n",
"from azureml.exceptions import WebserviceException\n",
"\n",

View File

@@ -10,3 +10,4 @@ dependencies:
- ipython
- matplotlib
- ipywidgets
- raiwidgets~=0.7.0

View File

@@ -204,6 +204,8 @@
"source": [
"### Provision a compute target\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"You can provision an AmlCompute resource by simply defining two parameters thanks to smart defaults. By default it autoscales from 0 nodes and provisions dedicated VMs to run your job in a container. This is useful when you want to continously re-use the same target, debug it between jobs or simply share the resource with other users of your workspace.\n",
"\n",
"* `vm_size`: VM family of the nodes provisioned by AmlCompute. Simply choose from the supported_vmsizes() above\n",
@@ -216,7 +218,6 @@
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.compute import ComputeTarget, AmlCompute\n",
"from azureml.core.compute_target import ComputeTargetException\n",
"\n",
"# Choose a name for your CPU cluster\n",
@@ -378,7 +379,6 @@
"outputs": [],
"source": [
"# Retrieve x_test for visualization\n",
"import joblib\n",
"x_test_path = './x_test.pkl'\n",
"run.download_file('x_test_ibm.pkl', output_file_path=x_test_path)\n",
"x_test = joblib.load(x_test_path)"
@@ -398,7 +398,7 @@
"metadata": {},
"outputs": [],
"source": [
"from interpret_community.widget import ExplanationDashboard"
"from raiwidgets import ExplanationDashboard"
]
},
{
@@ -407,7 +407,7 @@
"metadata": {},
"outputs": [],
"source": [
"ExplanationDashboard(global_explanation, original_svm_model, datasetX=x_test)"
"ExplanationDashboard(global_explanation, original_svm_model, dataset=x_test)"
]
},
{
@@ -424,8 +424,6 @@
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.conda_dependencies import CondaDependencies \n",
"\n",
"# WARNING: to install this, g++ needs to be available on the Docker image and is not by default (look at the next cell)\n",
"azureml_pip_packages = [\n",
" 'azureml-defaults', 'azureml-core', 'azureml-telemetry',\n",
@@ -435,7 +433,6 @@
"\n",
"# Note: this is to pin the scikit-learn and pandas versions to be same as notebook.\n",
"# In production scenario user would choose their dependencies\n",
"import pkg_resources\n",
"available_packages = pkg_resources.working_set\n",
"sklearn_ver = None\n",
"pandas_ver = None\n",
@@ -481,10 +478,8 @@
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.webservice import Webservice\n",
"from azureml.core.model import InferenceConfig\n",
"from azureml.core.webservice import AciWebservice\n",
"from azureml.core.model import Model\n",
"from azureml.core.environment import Environment\n",
"from azureml.exceptions import WebserviceException\n",
"\n",

View File

@@ -12,3 +12,4 @@ dependencies:
- azureml-dataset-runtime
- azureml-core
- ipywidgets
- raiwidgets~=0.7.0

View File

@@ -209,6 +209,8 @@
"#### Retrieve or create a Azure Machine Learning compute\n",
"Azure Machine Learning Compute is a service for provisioning and managing clusters of Azure virtual machines for running machine learning workloads. Let's create a new Azure Machine Learning Compute in the current workspace, if it doesn't already exist. We will then run the training script on this compute target.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"If we could not find the compute with the given name in the previous cell, then we will create a new compute here. We will create an Azure Machine Learning Compute containing **STANDARD_D2_V2 CPU VMs**. This process is broken down into the following steps:\n",
"\n",
"1. Create the configuration\n",

View File

@@ -55,7 +55,9 @@
"metadata": {},
"source": [
"### Compute Target\n",
"Retrieve an already attached Azure Machine Learning Compute to use in the Pipeline."
"Retrieve an already attached Azure Machine Learning Compute to use in the Pipeline.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -210,6 +210,8 @@
"## Retrieve or create a Azure Machine Learning compute\n",
"Azure Machine Learning Compute is a service for provisioning and managing clusters of Azure virtual machines for running machine learning workloads. Let's create a new Azure Machine Learning Compute in the current workspace, if it doesn't already exist. We will then run the training script on this compute target.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"If we could not find the compute with the given name in the previous cell, then we will create a new compute here. This process is broken down into the following steps:\n",
"\n",
"1. Create the configuration\n",

View File

@@ -68,7 +68,9 @@
"metadata": {},
"source": [
"### Compute Targets\n",
"#### Retrieve an already attached Azure Machine Learning Compute"
"#### Retrieve an already attached Azure Machine Learning Compute\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -54,7 +54,9 @@
"metadata": {},
"source": [
"### Compute Targets\n",
"#### Retrieve an already attached Azure Machine Learning Compute"
"#### Retrieve an already attached Azure Machine Learning Compute\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -78,7 +78,9 @@
"source": [
"#### Initialization, Steps to create a Pipeline\n",
"\n",
"The best practice is to use separate folders for scripts and its dependent files for each step and specify that folder as the `source_directory` for the step. This helps reduce the size of the snapshot created for the step (only the specific folder is snapshotted). Since changes in any files in the `source_directory` would trigger a re-upload of the snapshot, this helps keep the reuse of the step when there are no changes in the `source_directory` of the step."
"The best practice is to use separate folders for scripts and its dependent files for each step and specify that folder as the `source_directory` for the step. This helps reduce the size of the snapshot created for the step (only the specific folder is snapshotted). Since changes in any files in the `source_directory` would trigger a re-upload of the snapshot, this helps keep the reuse of the step when there are no changes in the `source_directory` of the step.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -109,7 +109,9 @@
"metadata": {},
"source": [
"## Create or Attach an AmlCompute cluster\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for your AutoML run. In this tutorial, you get the default `AmlCompute` as your training compute resource."
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for your AutoML run. In this tutorial, you get the default `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -111,7 +111,9 @@
"metadata": {},
"source": [
"## Create or Attach an AmlCompute cluster\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for your AutoML run. In this tutorial, you get the default `AmlCompute` as your training compute resource."
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for your AutoML run. In this tutorial, you get the default `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -699,12 +699,162 @@
]
},
{
"source": [
"### 5. Running demo notebook already added to the Databricks workspace using existing cluster\n",
"First you need register DBFS datastore and make sure path_on_datastore does exist in databricks file system, you can browser the files by refering [this](https://docs.azuredatabricks.net/user-guide/dbfs-databricks-file-system.html).\n",
"\n",
"Find existing_cluster_id by opeing Azure Databricks UI with Clusters page and in url you will find a string connected with '-' right after \"clusters/\"."
],
"cell_type": "markdown",
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"try:\n",
" dbfs_ds = Datastore.get(workspace=ws, datastore_name='dbfs_datastore')\n",
" print('DBFS Datastore already exists')\n",
"except Exception as ex:\n",
" dbfs_ds = Datastore.register_dbfs(ws, datastore_name='dbfs_datastore')\n",
"\n",
"step_1_input = DataReference(datastore=dbfs_ds, path_on_datastore=\"FileStore\", data_reference_name=\"input\")\n",
"step_1_output = PipelineData(\"output\", datastore=dbfs_ds)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"dbNbWithExistingClusterStep = DatabricksStep(\n",
" name=\"DBFSReferenceWithExisting\",\n",
" inputs=[step_1_input],\n",
" outputs=[step_1_output],\n",
" notebook_path=notebook_path,\n",
" notebook_params={'myparam': 'testparam', \n",
" 'myparam2': pipeline_param},\n",
" run_name='DBFS_Reference_With_Existing',\n",
" compute_target=databricks_compute,\n",
" existing_cluster_id=\"your existing cluster id\",\n",
" allow_reuse=True\n",
")"
]
},
{
"source": [
"#### Build and submit the Experiment"
],
"cell_type": "markdown",
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"steps = [dbNbWithExistingClusterStep]\n",
"pipeline = Pipeline(workspace=ws, steps=steps)\n",
"pipeline_run = Experiment(ws, 'DBFS_Reference_With_Existing').submit(pipeline)\n",
"pipeline_run.wait_for_completion()"
]
},
{
"source": [
"#### View Run Details"
],
"cell_type": "markdown",
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.widgets import RunDetails\n",
"RunDetails(pipeline_run).show()"
]
},
{
"source": [
"### 6. Running a Python script in Databricks that currenlty is in local computer with existing cluster\n",
"When you access azure blob or data lake storage from an existing (interactive) cluster, you need to ensure the Spark configuration is set up correctly to access this storage and this set up may require the cluster to be restarted.\n",
"\n",
"If you set permit_cluster_restart to True, AML will check if the spark configuration needs to be updated and restart the cluster for you if required. This will ensure that the storage can be correctly accessed from the Databricks cluster."
],
"cell_type": "markdown",
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"step_1_input = DataReference(datastore=def_blob_store, path_on_datastore=\"dbtest\",\n",
" data_reference_name=\"input\")\n",
"\n",
"dbPythonInLocalWithExistingStep = DatabricksStep(\n",
" name=\"DBPythonInLocalMachineWithExisting\",\n",
" inputs=[step_1_input],\n",
" python_script_name=python_script_name,\n",
" source_directory=source_directory,\n",
" run_name='DB_Python_Local_existing_demo',\n",
" compute_target=databricks_compute,\n",
" existing_cluster_id=\"your existing cluster id\",\n",
" allow_reuse=False,\n",
" permit_cluster_restart=True\n",
")"
]
},
{
"source": [
"#### Build and submit the Experiment"
],
"cell_type": "markdown",
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"steps = [dbPythonInLocalWithExistingStep]\n",
"pipeline = Pipeline(workspace=ws, steps=steps)\n",
"pipeline_run = Experiment(ws, 'DB_Python_Local_existing_demo').submit(pipeline)\n",
"pipeline_run.wait_for_completion()"
]
},
{
"source": [
"#### View Run Details"
],
"cell_type": "markdown",
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.widgets import RunDetails\n",
"RunDetails(pipeline_run).show()"
]
},
{
"source": [
"# Next: ADLA as a Compute Target\n",
"To use ADLA as a compute target from Azure Machine Learning Pipeline, a AdlaStep is used. This [notebook](https://aka.ms/pl-adla) demonstrates the use of AdlaStep in Azure Machine Learning Pipeline."
]
],
"cell_type": "markdown",
"metadata": {}
}
],
"metadata": {

View File

@@ -125,7 +125,9 @@
"metadata": {},
"source": [
"### Create or Attach an AmlCompute cluster\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for your AutoML run. In this tutorial, you get the default `AmlCompute` as your training compute resource."
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for your AutoML run. In this tutorial, you get the default `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{
@@ -146,7 +148,7 @@
" compute_target = ComputeTarget(workspace=ws, name=amlcompute_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2',# for GPU, use \"STANDARD_NC6\"\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_DS12_V2',# for GPU, use \"STANDARD_NC6\"\n",
" #vm_priority = 'lowpriority', # optional\n",
" max_nodes=4)\n",
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, compute_config)\n",

View File

@@ -79,7 +79,9 @@
"metadata": {},
"source": [
"## Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource."
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -77,7 +77,9 @@
"metadata": {},
"source": [
"## Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource."
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -134,7 +134,9 @@
"metadata": {},
"source": [
"#### Retrieve or create an Aml compute\n",
"Azure Machine Learning Compute is a service for provisioning and managing clusters of Azure virtual machines for running machine learning workloads. Let's get the default Aml Compute in the current workspace. We will then run the training script on this compute target."
"Azure Machine Learning Compute is a service for provisioning and managing clusters of Azure virtual machines for running machine learning workloads. Let's get the default Aml Compute in the current workspace. We will then run the training script on this compute target.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -147,7 +147,9 @@
"metadata": {},
"source": [
"### Create or Attach an AmlCompute cluster\n",
"You will need to create a [compute target](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.computetarget?view=azure-ml-py) for your remote run. In this tutorial, you get the default `AmlCompute` as your training compute resource."
"You will need to create a [compute target](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.computetarget?view=azure-ml-py) for your remote run. In this tutorial, you get the default `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -225,7 +225,9 @@
"metadata": {},
"source": [
"### Setup Compute\n",
"#### Create new or use an existing compute"
"#### Create new or use an existing compute\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{
@@ -245,7 +247,7 @@
" aml_compute = ComputeTarget(workspace=ws, name=amlcompute_cluster_name)\n",
" print('Found existing cluster, use it.')\n",
"except ComputeTargetException:\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_D2_V2',\n",
" compute_config = AmlCompute.provisioning_configuration(vm_size='STANDARD_DS12_V2',\n",
" max_nodes=4)\n",
" aml_compute = ComputeTarget.create(ws, amlcompute_cluster_name, compute_config)\n",
"\n",
@@ -679,7 +681,6 @@
"metadata": {},
"outputs": [],
"source": [
"import logging\n",
"from azureml.train.automl import AutoMLConfig\n",
"\n",
"# Change iterations to a reasonable number (50) to get better accuracy\n",
@@ -782,8 +783,8 @@
" path = download_path + '/azureml/' + output_folder + '/' + output_name\n",
" return path\n",
"\n",
"def fetch_df(step, output_name):\n",
" output_data = step.get_output_data(output_name) \n",
"def fetch_df(current_step, output_name):\n",
" output_data = current_step.get_output_data(output_name) \n",
" download_path = './outputs/' + output_name\n",
" output_data.download(download_path, overwrite=True)\n",
" df_path = get_download_path(download_path, output_name) + '/processed.parquet'\n",
@@ -939,32 +940,6 @@
"#RunDetails(automl_run).show()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Retrieve all Child runs\n",
"\n",
"We use SDK methods to fetch all the child runs and see individual metrics that we log."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"children = list(automl_run.get_children())\n",
"metricslist = {}\n",
"for run in children:\n",
" properties = run.get_properties()\n",
" metrics = {k: v for k, v in run.get_metrics().items() if isinstance(v, float)}\n",
" metricslist[int(properties['iteration'])] = metrics\n",
"\n",
"rundata = pd.DataFrame(metricslist).sort_index(1)\n",
"rundata"
]
},
{
"cell_type": "markdown",
"metadata": {},

View File

@@ -2,6 +2,7 @@ name: nyc-taxi-data-regression-model-building
dependencies:
- pip:
- azureml-sdk
- certifi
- azureml-widgets
- azureml-opendatasets
- azureml-train-automl

View File

@@ -122,4 +122,8 @@ pipeline_run.wait_for_completion(show_output=True)
- [tabular-dataset-inference-iris.ipynb](./tabular-dataset-inference-iris.ipynb) demonstrates how to run batch inference on an IRIS dataset using TabularDataset.
- [pipeline-style-transfer.ipynb](../pipeline-style-transfer/pipeline-style-transfer-parallel-run.ipynb) demonstrates using ParallelRunStep in multi-step pipeline and using output from one step as input to ParallelRunStep.
# Troubleshooting guide
- [Troubleshooting the ParallelRunStep](https://aka.ms/prstsg) includes answers to frequently asked questions. You can find more references there.
![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/machine-learning-pipelines/parallel-run/README.png)

View File

@@ -24,9 +24,9 @@
"In this notebook, we will demonstrate how to make predictions on large quantities of data asynchronously using the ML pipelines with Azure Machine Learning. Batch inference (or batch scoring) provides cost-effective inference, with unparalleled throughput for asynchronous applications. Batch prediction pipelines can scale to perform inference on terabytes of production data. Batch prediction is optimized for high throughput, fire-and-forget predictions for a large collection of data.\n",
"\n",
"> **Tip**\n",
"If your system requires low-latency processing (to process a single document or small set of documents quickly), use [real-time scoring](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-consume-web-service) instead of batch prediction.\n",
"If your system requires low-latency processing (to process a single document or small set of documents quickly), use [real-time scoring](https://docs.microsoft.com/azure/machine-learning/service/how-to-consume-web-service) instead of batch prediction.\n",
"\n",
"In this example will be take a digit identification model already-trained on MNIST dataset using the [AzureML training with deep learning example notebook](https://github.com/Azure/MachineLearningNotebooks/blob/master/how-to-use-azureml/training-with-deep-learning/train-hyperparameter-tune-deploy-with-keras/train-hyperparameter-tune-deploy-with-keras.ipynb), and run that trained model on some of the MNIST test images in batch. \n",
"In this example will be take a digit identification model already-trained on MNIST dataset using the [AzureML training with deep learning example notebook](https://github.com/Azure/MachineLearningNotebooks/blob/master/how-to-use-azureml/ml-frameworks/keras/train-hyperparameter-tune-deploy-with-keras/train-hyperparameter-tune-deploy-with-keras.ipynb), and run that trained model on some of the MNIST test images in batch. \n",
"\n",
"The input dataset used for this notebook differs from a standard MNIST dataset in that it has been converted to PNG images to demonstrate use of files as inputs to Batch Inference. A sample of PNG-converted images of the MNIST dataset were take from [this repository](https://github.com/myleott/mnist_png). \n",
"\n",
@@ -86,6 +86,8 @@
"### Create or Attach existing compute resource\n",
"By using Azure Machine Learning Compute, a managed service, data scientists can train machine learning models on clusters of Azure virtual machines. Examples include VMs with GPU support. In this tutorial, you create Azure Machine Learning Compute as your training environment. The code below creates the compute clusters for you if they don't already exist in your workspace.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Creation of compute takes approximately 5 minutes. If the AmlCompute with that name is already in your workspace the code will skip the creation process.**"
]
},
@@ -180,8 +182,7 @@
"metadata": {},
"source": [
"### Create a FileDataset\n",
"A [FileDataset](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.data.filedataset?view=azure-ml-py) references single or multiple files in your datastores or public urls. The files can be of any format. FileDataset provides you with the ability to download or mount the files to your compute. By creating a dataset, you create a reference to the data source location. If you applied any subsetting transformations to the dataset, they will be stored in the dataset as well. The data remains in its existing location, so no extra storage cost is incurred.",
"\n",
"A [FileDataset](https://docs.microsoft.com/python/api/azureml-core/azureml.data.filedataset?view=azure-ml-py) references single or multiple files in your datastores or public urls. The files can be of any format. FileDataset provides you with the ability to download or mount the files to your compute. By creating a dataset, you create a reference to the data source location. If you applied any subsetting transformations to the dataset, they will be stored in the dataset as well. The data remains in its existing location, so no extra storage cost is incurred.\n",
"You can use dataset objects as inputs. Register the datasets to the workspace if you want to reuse them later."
]
},
@@ -224,7 +225,7 @@
"metadata": {},
"source": [
"### Intermediate/Output Data\n",
"Intermediate data (or output of a Step) is represented by [PipelineData](https://docs.microsoft.com/en-us/python/api/azureml-pipeline-core/azureml.pipeline.core.pipelinedata?view=azure-ml-py) object. PipelineData can be produced by one step and consumed in another step by providing the PipelineData object as an output of one step and the input of one or more steps."
"Intermediate data (or output of a Step) is represented by [PipelineData](https://docs.microsoft.com/python/api/azureml-pipeline-core/azureml.pipeline.core.pipelinedata?view=azure-ml-py) object. PipelineData can be produced by one step and consumed in another step by providing the PipelineData object as an output of one step and the input of one or more steps."
]
},
{
@@ -276,7 +277,7 @@
"### Register the model with Workspace\n",
"A registered model is a logical container for one or more files that make up your model. For example, if you have a model that's stored in multiple files, you can register them as a single model in the workspace. After you register the files, you can then download or deploy the registered model and receive all the files that you registered.\n",
"\n",
"Using tags, you can track useful information such as the name and version of the machine learning library used to train the model. Note that tags must be alphanumeric. Learn more about registering models [here](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-deploy-and-where#registermodel) "
"Using tags, you can track useful information such as the name and version of the machine learning library used to train the model. Note that tags must be alphanumeric. Learn more about registering models [here](https://docs.microsoft.com/azure/machine-learning/service/how-to-deploy-and-where#registermodel) "
]
},
{
@@ -362,7 +363,6 @@
" \"azureml-core\", \"azureml-dataset-runtime[fuse]\"])\n",
"batch_env = Environment(name=\"batch_environment\")\n",
"batch_env.python.conda_dependencies = batch_conda_deps\n",
"batch_env.docker.enabled = True\n",
"batch_env.docker.base_image = DEFAULT_CPU_IMAGE"
]
},
@@ -379,7 +379,6 @@
"metadata": {},
"outputs": [],
"source": [
"from azureml.pipeline.core import PipelineParameter\n",
"from azureml.pipeline.steps import ParallelRunStep, ParallelRunConfig\n",
"\n",
"parallel_run_config = ParallelRunConfig(\n",

View File

@@ -24,7 +24,7 @@
"In this notebook, we will demonstrate how to make predictions on large quantities of data asynchronously using the ML pipelines with Azure Machine Learning. Batch inference (or batch scoring) provides cost-effective inference, with unparalleled throughput for asynchronous applications. Batch prediction pipelines can scale to perform inference on terabytes of production data. Batch prediction is optimized for high throughput, fire-and-forget predictions for a large collection of data.\n",
"\n",
"> **Tip**\n",
"If your system requires low-latency processing (to process a single document or small set of documents quickly), use [real-time scoring](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-consume-web-service) instead of batch prediction.\n",
"If your system requires low-latency processing (to process a single document or small set of documents quickly), use [real-time scoring](https://docs.microsoft.com/azure/machine-learning/service/how-to-consume-web-service) instead of batch prediction.\n",
"\n",
"In this example we will take use a machine learning model already trained to predict different types of iris flowers and run that trained model on some of the data in a CSV file which has characteristics of different iris flowers. However, the same example can be extended to manipulating data to any embarrassingly-parallel processing through a python script.\n",
"\n",
@@ -84,6 +84,8 @@
"### Create or Attach existing compute resource\n",
"By using Azure Machine Learning Compute, a managed service, data scientists can train machine learning models on clusters of Azure virtual machines. Examples include VMs with GPU support. In this tutorial, you create Azure Machine Learning Compute as your training environment. The code below creates the compute clusters for you if they don't already exist in your workspace.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Creation of compute takes approximately 5 minutes. If the AmlCompute with that name is already in your workspace the code will skip the creation process.**"
]
},
@@ -160,7 +162,7 @@
"metadata": {},
"source": [
"### Create a TabularDataset\n",
"A [TabularDataSet](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.data.tabulardataset?view=azure-ml-py) references single or multiple files which contain data in a tabular structure (ie like CSV files) in your datastores or public urls. TabularDatasets provides you with the ability to download or mount the files to your compute. By creating a dataset, you create a reference to the data source location. If you applied any subsetting transformations to the dataset, they will be stored in the dataset as well. The data remains in its existing location, so no extra storage cost is incurred.\n",
"A [TabularDataSet](https://docs.microsoft.com/python/api/azureml-core/azureml.data.tabulardataset?view=azure-ml-py) references single or multiple files which contain data in a tabular structure (ie like CSV files) in your datastores or public urls. TabularDatasets provides you with the ability to download or mount the files to your compute. By creating a dataset, you create a reference to the data source location. If you applied any subsetting transformations to the dataset, they will be stored in the dataset as well. The data remains in its existing location, so no extra storage cost is incurred.\n",
"You can use dataset objects as inputs. Register the datasets to the workspace if you want to reuse them later."
]
},
@@ -184,7 +186,7 @@
"metadata": {},
"source": [
"### Intermediate/Output Data\n",
"Intermediate data (or output of a Step) is represented by [PipelineData](https://docs.microsoft.com/en-us/python/api/azureml-pipeline-core/azureml.pipeline.core.pipelinedata?view=azure-ml-py) object. PipelineData can be produced by one step and consumed in another step by providing the PipelineData object as an output of one step and the input of one or more steps."
"Intermediate data (or output of a Step) is represented by [PipelineData](https://docs.microsoft.com/python/api/azureml-pipeline-core/azureml.pipeline.core.pipelinedata?view=azure-ml-py) object. PipelineData can be produced by one step and consumed in another step by providing the PipelineData object as an output of one step and the input of one or more steps."
]
},
{
@@ -311,7 +313,6 @@
"\n",
"predict_env = Environment(name=\"predict_environment\")\n",
"predict_env.python.conda_dependencies = predict_conda_deps\n",
"predict_env.docker.enabled = True\n",
"predict_env.spark.precache_packages = False"
]
},

View File

@@ -178,7 +178,9 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"# Create or use existing compute"
"# Create or use existing compute\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -98,6 +98,8 @@
"## Create or attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, we use Azure ML managed compute ([AmlCompute](https://docs.microsoft.com/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute)) for our remote training compute resource. Specifically, the below code creates an `STANDARD_NC6` GPU cluster that autoscales from `0` to `4` nodes.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Creation of AmlCompute takes approximately 5 minutes.** If the AmlCompute with that name is already in your workspace, this code will skip the creation process.\n",
"\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."

View File

@@ -98,6 +98,8 @@
"## Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, we use Azure ML managed compute ([AmlCompute](https://docs.microsoft.com/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute)) for our remote training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Creation of AmlCompute takes approximately 5 minutes.** If the AmlCompute with that name is already in your workspace, this code will skip the creation process.\n",
"\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."

View File

@@ -222,6 +222,8 @@
"### Create or attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Creation of AmlCompute takes approximately 5 minutes.** If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."

View File

@@ -272,7 +272,9 @@
"metadata": {},
"source": [
"## Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource."
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -99,6 +99,8 @@
"## Create or attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, we use Azure ML managed compute ([AmlCompute](https://docs.microsoft.com/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute)) for our remote training compute resource. Specifically, the below code creates an `STANDARD_NC6` GPU cluster that autoscales from `0` to `4` nodes.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Creation of AmlCompute takes approximately 5 minutes.** If the AmlCompute with that name is already in your workspace, this code will skip the creation process.\n",
"\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."

View File

@@ -99,6 +99,8 @@
"## Create or attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, we use Azure ML managed compute ([AmlCompute](https://docs.microsoft.com/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute)) for our remote training compute resource. Specifically, the below code creates an `STANDARD_NC6` GPU cluster that autoscales from `0` to `4` nodes.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Creation of AmlCompute takes approximately 5 minutes.** If the AmlCompute with that name is already in your workspace, this code will skip the creation process.\n",
"\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."

View File

@@ -100,6 +100,8 @@
"## Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, we use Azure ML managed compute ([AmlCompute](https://docs.microsoft.com/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute)) for our remote training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Creation of AmlCompute takes approximately 5 minutes.** If the AmlCompute with that name is already in your workspace, this code will skip the creation process.\n",
"\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."

View File

@@ -117,6 +117,8 @@
"source": [
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, we use Azure ML managed compute ([AmlCompute](https://docs.microsoft.com/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute)) for our remote training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."
]
},

View File

@@ -101,6 +101,8 @@
"## Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Creation of AmlCompute takes approximately 5 minutes.** If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."

View File

@@ -101,6 +101,8 @@
"## Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Creation of AmlCompute takes approximately 5 minutes.** If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."

View File

@@ -270,7 +270,9 @@
"metadata": {},
"source": [
"## Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource."
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -286,7 +286,9 @@
"metadata": {},
"source": [
"## Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource."
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

View File

@@ -101,6 +101,8 @@
"## Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for training your model. In this tutorial, you create `AmlCompute` as your training compute resource.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Creation of AmlCompute takes approximately 5 minutes.** If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."

View File

@@ -250,7 +250,7 @@
"source": [
"### Deploy model as web service\n",
"\n",
"The ```mlflow.azureml.deploy``` function registers the logged Keras+Tensorflow model and deploys the model in a framework-aware manner. It automatically creates the Tensorflow-specific inferencing wrapper code and specifies package dependencies for you. See [this doc](https://mlflow.org/docs/latest/models.html#id34) for more information on deploying models on Azure ML using MLflow.\n",
"The ```client.create_deployment``` function registers the logged Keras+Tensorflow model and deploys the model in a framework-aware manner. It automatically creates the Tensorflow-specific inferencing wrapper code and specifies package dependencies for you. See [this doc](https://mlflow.org/docs/latest/models.html#id34) for more information on deploying models on Azure ML using MLflow.\n",
"\n",
"In this example, we deploy the Docker image to Azure Container Instance: a serverless compute capable of running a single container. You can tag and add descriptions to help keep track of your web service. \n",
"\n",
@@ -259,131 +259,63 @@
"Note that the service deployment can take several minutes."
]
},
{
"source": [
"First define your deployment target and customize parameters in the deployment config. Refer to [this documentation](https://docs.microsoft.com/azure/machine-learning/reference-azure-machine-learning-cli#azure-container-instance-deployment-configuration-schema) for more information. "
],
"cell_type": "markdown",
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.webservice import AciWebservice, Webservice\n",
"import json\n",
" \n",
"# Data to be written\n",
"deploy_config ={\n",
" \"computeType\": \"aci\"\n",
"}\n",
"# Serializing json \n",
"json_object = json.dumps(deploy_config)\n",
" \n",
"# Writing to sample.json\n",
"with open(\"deployment_config.json\", \"w\") as outfile:\n",
" outfile.write(json_object)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from mlflow.deployments import get_deploy_client\n",
"\n",
"# set the tracking uri as the deployment client\n",
"client = get_deploy_client(mlflow.get_tracking_uri())\n",
"\n",
"# set the model path \n",
"model_path = \"model\"\n",
"\n",
"aci_config = AciWebservice.deploy_configuration(cpu_cores=2, \n",
" memory_gb=5, \n",
" tags={\"data\": \"MNIST\", \"method\" : \"keras\"}, \n",
" description=\"Predict using webservice\")\n",
"# set the deployment config\n",
"deployment_config_path = \"deployment_config.json\"\n",
"test_config = {'deploy-config-file': deployment_config_path}\n",
"\n",
"webservice, azure_model = mlflow.azureml.deploy(model_uri='runs:/{}/{}'.format(run.id, model_path),\n",
" workspace=ws,\n",
" deployment_config=aci_config,\n",
" service_name=\"keras-mnist-1\",\n",
" model_name=\"keras_mnist\")"
"# define the model path and the name is the service name\n",
"# the model gets registered automatically and a name is autogenerated using the \"name\" parameter below \n",
"client.create_deployment(model_uri='runs:/{}/{}'.format(run.id, model_path),\n",
" config=test_config,\n",
" name=\"keras-aci-deployment\")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Once the deployment has completed you can check the scoring URI of the web service."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"print(\"Scoring URI is: {}\".format(webservice.scoring_uri))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"In case of a service creation issue, you can use ```webservice.get_logs()``` to get logs to debug."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Make predictions using a web service\n",
"\n",
"To make the web service, create a test data set as normalized NumPy array. \n",
"\n",
"Then, let's define a utility function that takes a random image and converts it into a format and shape suitable for input to the Keras inferencing end-point. The conversion is done by: \n",
"\n",
" 1. Select a random (image, label) tuple\n",
" 2. Take the image and converting to to NumPy array \n",
" 3. Reshape array into 1 x 1 x N array\n",
" * 1 image in batch, 1 color channel, N = 784 pixels for MNIST images\n",
" * Note also ```x = x.view(-1, 1, 28, 28)``` in net definition in ```train.py``` program to shape incoming scoring requests.\n",
" 4. Convert the NumPy array to list to make it into a built-in type.\n",
" 5. Create a dictionary {\"data\", &lt;list&gt;} that can be converted to JSON string for web service requests."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import keras\n",
"import random\n",
"import numpy as np\n",
"\n",
"# the data, split between train and test sets\n",
"(x_train, y_train), (x_test, y_test) = keras.datasets.mnist.load_data()\n",
"\n",
"# Scale images to the [0, 1] range\n",
"x_test = x_test.astype(\"float32\") / 255\n",
"x_test = x_test.reshape(len(x_test), -1)\n",
"\n",
"# convert class vectors to binary class matrices\n",
"y_test = keras.utils.to_categorical(y_test, 10)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"%matplotlib inline\n",
"\n",
"import json\n",
"import matplotlib.pyplot as plt\n",
"\n",
"# send a random row from the test set to score\n",
"random_index = np.random.randint(0, len(x_test)-1)\n",
"input_data = \"{\\\"data\\\": [\" + str(list(x_test[random_index])) + \"]}\"\n",
"\n",
"response = webservice.run(input_data)\n",
"\n",
"response = sorted(response[0].items(), key = lambda x: x[1], reverse = True)\n",
"\n",
"print(\"Predicted label:\", response[0][0])\n",
"plt.imshow(x_test[random_index].reshape(28,28), cmap = \"gray\")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"You can also call the web service using a raw POST method against the web service"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import requests\n",
"\n",
"response = requests.post(url=webservice.scoring_uri, data=input_data,headers={\"Content-type\": \"application/json\"})\n",
"print(response.text)"
"Once the deployment has completed you can check the scoring URI of the web service in AzureML studio UI in the endpoints tab. Refer [mlflow predict](https://mlflow.org/docs/latest/python_api/mlflow.deployments.html#mlflow.deployments.BaseDeploymentClient.predict) on how to test your deployment. "
]
},
{
@@ -400,7 +332,7 @@
"metadata": {},
"outputs": [],
"source": [
"webservice.delete()"
"client.delete(\"keras-aci-deployment\")"
]
}
],

View File

@@ -249,7 +249,7 @@
"source": [
"## Deploy model as web service\n",
"\n",
"The ```mlflow.azureml.deploy``` function registers the logged PyTorch model and deploys the model in a framework-aware manner. It automatically creates the PyTorch-specific inferencing wrapper code and specifies package dependencies for you. See [this doc](https://mlflow.org/docs/latest/models.html#id34) for more information on deploying models on Azure ML using MLflow.\n",
"The ```client.create_deployment``` function registers the logged PyTorch model and deploys the model in a framework-aware manner. It automatically creates the PyTorch-specific inferencing wrapper code and specifies package dependencies for you. See [this doc](https://mlflow.org/docs/latest/models.html#id34) for more information on deploying models on Azure ML using MLflow.\n",
"\n",
"In this example, we deploy the Docker image to Azure Container Instance: a serverless compute capable of running a single container. You can tag and add descriptions to help keep track of your web service. \n",
"\n",
@@ -258,33 +258,63 @@
"Note that the service deployment can take several minutes."
]
},
{
"source": [
"First define your deployment target and customize parameters in the deployment config. Refer to [this documentation](https://docs.microsoft.com/azure/machine-learning/reference-azure-machine-learning-cli#azure-container-instance-deployment-configuration-schema) for more information. "
],
"cell_type": "markdown",
"metadata": {}
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.webservice import AciWebservice, Webservice\n",
"import json\n",
" \n",
"# Data to be written\n",
"deploy_config ={\n",
" \"computeType\": \"aci\"\n",
"}\n",
"# Serializing json \n",
"json_object = json.dumps(deploy_config)\n",
" \n",
"# Writing to sample.json\n",
"with open(\"deployment_config.json\", \"w\") as outfile:\n",
" outfile.write(json_object)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from mlflow.deployments import get_deploy_client\n",
"\n",
"# set the tracking uri as the deployment client\n",
"client = get_deploy_client(mlflow.get_tracking_uri())\n",
"\n",
"# set the model path \n",
"model_path = \"model\"\n",
"\n",
"aci_config = AciWebservice.deploy_configuration(cpu_cores=2, \n",
" memory_gb=5, \n",
" tags={\"data\": \"MNIST\", \"method\" : \"pytorch\"}, \n",
" description=\"Predict using webservice\")\n",
"# set the deployment config\n",
"deployment_config_path = \"deployment_config.json\"\n",
"test_config = {'deploy-config-file': deployment_config_path}\n",
"\n",
"webservice, azure_model = mlflow.azureml.deploy(model_uri='runs:/{}/{}'.format(run.id, model_path),\n",
" workspace=ws,\n",
" deployment_config=aci_config,\n",
" service_name=\"pytorch-mnist-1\",\n",
" model_name=\"pytorch_mnist\")"
"# define the model path and the name is the service name\n",
"# the model gets registered automatically and a name is autogenerated using the \"name\" parameter below \n",
"client.create_deployment(model_uri='runs:/{}/{}'.format(run.id, model_path),\n",
" config=test_config,\n",
" name=\"keras-aci-deployment\")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Once the deployment has completed you can check the scoring URI of the web service."
"Once the deployment has completed you can check the scoring URI of the web service in AzureML studio UI in the endpoints tab. Refer [mlflow predict](https://mlflow.org/docs/latest/python_api/mlflow.deployments.html#mlflow.deployments.BaseDeploymentClient.predict) on how to test your deployment. "
]
},
{
@@ -293,133 +323,7 @@
"metadata": {},
"outputs": [],
"source": [
"print(\"Scoring URI is: {}\".format(webservice.scoring_uri))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"In case of a service creation issue, you can use ```webservice.get_logs()``` to get logs to debug."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Make predictions using a web service\n",
"\n",
"To make the web service, create a test data set as normalized PyTorch tensors. \n",
"\n",
"Then, let's define a utility function that takes a random image and converts it into a format and shape suitable for input to the PyTorch inferencing end-point. The conversion is done by: \n",
"\n",
" 1. Select a random (image, label) tuple\n",
" 2. Take the image and converting the tensor to NumPy array \n",
" 3. Reshape array into 1 x 1 x N array\n",
" * 1 image in batch, 1 color channel, N = 784 pixels for MNIST images\n",
" * Note also ```x = x.view(-1, 1, 28, 28)``` in net definition in ```train.py``` program to shape incoming scoring requests.\n",
" 4. Convert the NumPy array to list to make it into a built-in type.\n",
" 5. Create a dictionary {\"data\", &lt;list&gt;} that can be converted to JSON string for web service requests."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from torchvision import datasets, transforms\n",
"import random\n",
"import numpy as np\n",
"\n",
"# Use Azure Open Datasets for MNIST dataset\n",
"datasets.MNIST.resources = [\n",
" (\"https://azureopendatastorage.azurefd.net/mnist/train-images-idx3-ubyte.gz\",\n",
" \"f68b3c2dcbeaaa9fbdd348bbdeb94873\"),\n",
" (\"https://azureopendatastorage.azurefd.net/mnist/train-labels-idx1-ubyte.gz\",\n",
" \"d53e105ee54ea40749a09fcbcd1e9432\"),\n",
" (\"https://azureopendatastorage.azurefd.net/mnist/t10k-images-idx3-ubyte.gz\",\n",
" \"9fb629c4189551a2d022fa330f9573f3\"),\n",
" (\"https://azureopendatastorage.azurefd.net/mnist/t10k-labels-idx1-ubyte.gz\",\n",
" \"ec29112dd5afa0611ce80d1b7f02629c\")\n",
"]\n",
"\n",
"test_data = datasets.MNIST('../data', train=False, transform=transforms.Compose([\n",
" transforms.ToTensor(),\n",
" transforms.Normalize((0.1307,), (0.3081,))]))\n",
"\n",
"\n",
"def get_random_image():\n",
" image_idx = random.randint(0,len(test_data))\n",
" image_as_tensor = test_data[image_idx][0]\n",
" return {\"data\": elem for elem in image_as_tensor.numpy().reshape(1,1,-1).tolist()}"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Then, invoke the web service using a random test image. Convert the dictionary containing the image to JSON string before passing it to web service.\n",
"\n",
"The response contains the raw scores for each label, with greater value indicating higher probability. Sort the labels and select the one with greatest score to get the prediction. Let's also plot the image sent to web service for comparison purposes."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"%matplotlib inline\n",
"\n",
"import json\n",
"import matplotlib.pyplot as plt\n",
"\n",
"test_image = get_random_image()\n",
"\n",
"response = webservice.run(json.dumps(test_image))\n",
"\n",
"response = sorted(response[0].items(), key = lambda x: x[1], reverse = True)\n",
"\n",
"\n",
"print(\"Predicted label:\", response[0][0])\n",
"plt.imshow(np.array(test_image[\"data\"]).reshape(28,28), cmap = \"gray\")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"You can also call the web service using a raw POST method against the web service"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import requests\n",
"\n",
"response = requests.post(url=webservice.scoring_uri, data=json.dumps(test_image),headers={\"Content-type\": \"application/json\"})\n",
"print(response.text)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Clean up\n",
"You can delete the ACI deployment with a delete API call."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"webservice.delete()"
"client.delete(\"keras-aci-deployment\")"
]
}
],

View File

@@ -141,13 +141,20 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"### Create Virtual Network\n",
"### Create Virtual Network and Network Security Group\n",
"\n",
"If you are using separate compute targets for the Ray head and worker, a virtual network must be created in the resource group. If you have alraeady created a virtual network in the resource group, you can skip this step.\n",
"**If you are using separate compute targets for the Ray head and worker, as we do in this notebook**, a virtual network must be created in the resource group. If you have already created a virtual network in the resource group, you can skip this step.\n",
"\n",
"To do this, you first must install the Azure Networking API.\n",
"> Note that your user role must have permissions to create and manage virtual networks to run the cells below. Talk to your IT admin if you do not have these permissions.\n",
"\n",
"`pip install --upgrade azure-mgmt-network==12.0.0`"
"#### Create Virtual Network\n",
"To create the virtual network you first must install the [Azure Networking Python API](https://docs.microsoft.com/python/api/overview/azure/network?view=azure-python).\n",
"\n",
"`pip install --upgrade azure-mgmt-network`\n",
"\n",
"Note: In this section we are using [DefaultAzureCredential](https://docs.microsoft.com/python/api/azure-identity/azure.identity.defaultazurecredential?view=azure-python)\n",
"class for authentication which, by default, examines several options in turn, and stops on the first option that provides\n",
"a token. You will need to log in using Azure CLI, if none of the other options are available (please find more details [here](https://docs.microsoft.com/python/api/azure-identity/azure.identity.defaultazurecredential?view=azure-python))."
]
},
{
@@ -157,7 +164,7 @@
"outputs": [],
"source": [
"# If you need to install the Azure Networking SDK, uncomment the following line.\n",
"#!pip install --upgrade azure-mgmt-network==12.0.0"
"#!pip install --upgrade azure-mgmt-network"
]
},
{
@@ -167,6 +174,7 @@
"outputs": [],
"source": [
"from azure.mgmt.network import NetworkManagementClient\n",
"from azure.identity import DefaultAzureCredential\n",
"\n",
"# Virtual network name\n",
"vnet_name =\"rl_pong_vnet\"\n",
@@ -183,9 +191,9 @@
"# Azure region of the resource group\n",
"location=ws.location\n",
"\n",
"network_client = NetworkManagementClient(ws._auth_object, subscription_id)\n",
"network_client = NetworkManagementClient(credential=DefaultAzureCredential(), subscription_id=subscription_id)\n",
"\n",
"async_vnet_creation = network_client.virtual_networks.create_or_update(\n",
"async_vnet_creation = network_client.virtual_networks.begin_create_or_update(\n",
" resource_group,\n",
" vnet_name,\n",
" {\n",
@@ -204,9 +212,9 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"### Set up Network Security Group on Virtual Network\n",
"#### Set up Network Security Group on Virtual Network\n",
"\n",
"Depending on your Azure setup, you may need to open certain ports to make it possible for Azure to manage the compute targets that you create. The ports that need to be opened are described [here](https://docs.microsoft.com/en-us/azure/machine-learning/how-to-enable-virtual-network).\n",
"Depending on your Azure setup, you may need to open certain ports to make it possible for Azure to manage the compute targets that you create. The ports that need to be opened are described [here](https://docs.microsoft.com/azure/machine-learning/how-to-enable-virtual-network).\n",
"\n",
"A common situation is that ports `29876-29877` are closed. The following code will add a security rule to open these ports. Or you can do this manually in the [Azure portal](https://portal.azure.com).\n",
"\n",
@@ -243,7 +251,7 @@
" ],\n",
")\n",
"\n",
"async_nsg_creation = network_client.network_security_groups.create_or_update(\n",
"async_nsg_creation = network_client.network_security_groups.begin_create_or_update(\n",
" resource_group,\n",
" security_group_name,\n",
" nsg_params,\n",
@@ -265,7 +273,7 @@
" )\n",
" \n",
"# Create subnet on virtual network\n",
"async_subnet_creation = network_client.subnets.create_or_update(\n",
"async_subnet_creation = network_client.subnets.begin_create_or_update(\n",
" resource_group_name=resource_group,\n",
" virtual_network_name=vnet_name,\n",
" subnet_name=subnet_name,\n",
@@ -280,7 +288,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"### Review the virtual network security rules\n",
"#### Review the virtual network security rules\n",
"Ensure that the virtual network is configured correctly with required ports open. It is possible that you have configured rules with broader range of ports that allows ports 29876-29877 to be opened. Kindly review your network security group rules. "
]
},
@@ -291,17 +299,24 @@
"outputs": [],
"source": [
"from files.networkutils import *\n",
"from azure.identity import DefaultAzureCredential\n",
"\n",
"check_vnet_security_rules(ws._auth_object, ws.subscription_id, ws.resource_group, vnet_name, True)"
"check_vnet_security_rules(DefaultAzureCredential(), ws.subscription_id, ws.resource_group, vnet_name, True)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Create head compute target\n",
"### Create compute targets\n",
"\n",
"In this example, we show how to set up separate compute targets for the Ray head and Ray worker nodes. First we define the head cluster with GPU for the Ray head node. One CPU of the head node will be used for the Ray head process and the rest of the CPUs will be used by the Ray worker processes."
"In this example, we show how to set up separate compute targets for the Ray head and Ray worker nodes.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"#### Create head compute target\n",
"\n",
"First we define the head cluster with GPU for the Ray head node. One CPU of the head node will be used for the Ray head process and the rest of the CPUs will be used by the Ray worker processes."
]
},
{
@@ -353,7 +368,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"### Create worker compute target\n",
"#### Create worker compute target\n",
"\n",
"Now we create a compute target with CPUs for the additional Ray worker nodes. CPUs in these worker nodes are used by Ray worker processes. Each Ray worker node, depending on the CPUs on the node, may have multiple Ray worker processes. There can be multiple worker tasks on each worker process (core)."
]

View File

@@ -5,4 +5,5 @@ dependencies:
- azureml-contrib-reinforcementlearning
- azureml-widgets
- matplotlib
- azure-mgmt-network==12.0.0
- azure-mgmt-network
- azure-cli

View File

@@ -451,9 +451,8 @@
"metadata": {},
"source": [
"### Create a dataset of training artifacts\n",
"To evaluate a trained policy (a checkpoint) we need to make the checkpoint accessible to the rollout script. All the training artifacts are stored in workspace default datastore under **azureml/&lt;run_id&gt;** directory.\n",
"\n",
"Here we create a file dataset from the stored artifacts, and then use this dataset to feed these data to rollout estimator."
"To evaluate a trained policy (a checkpoint) we need to make the checkpoint accessible to the rollout script.\n",
"We can use the Run API to download policy training artifacts (saved model and checkpoints) to local compute."
]
},
{
@@ -462,22 +461,24 @@
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Dataset\n",
"from os import path\n",
"from distutils import dir_util\n",
"\n",
"run_id = child_run_0.id # Or set to run id of a completed run (e.g. 'rl-cartpole-v0_1587572312_06e04ace_head')\n",
"run_artifacts_path = os.path.join('azureml', run_id)\n",
"print(\"Run artifacts path:\", run_artifacts_path)\n",
"training_artifacts_path = path.join(\"logs\", training_algorithm)\n",
"print(\"Training artifacts path:\", training_artifacts_path)\n",
"\n",
"# Create a file dataset object from the files stored on default datastore\n",
"datastore = ws.get_default_datastore()\n",
"training_artifacts_ds = Dataset.File.from_files(datastore.path(os.path.join(run_artifacts_path, '**')))"
"if path.exists(training_artifacts_path):\n",
" dir_util.remove_tree(training_artifacts_path)\n",
"\n",
"# Download run artifacts to local compute\n",
"child_run_0.download_files(training_artifacts_path)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"To verify, we can print out the number (and paths) of all the files in the dataset, as follows."
"Now let's find the checkpoints and the last checkpoint number."
]
},
{
@@ -486,7 +487,73 @@
"metadata": {},
"outputs": [],
"source": [
"artifacts_paths = training_artifacts_ds.to_path()\n",
"# A helper function to find checkpoint files in a directory\n",
"def find_checkpoints(file_path):\n",
" print(\"Looking in path:\", file_path)\n",
" checkpoints = []\n",
" for root, _, files in os.walk(file_path):\n",
" for name in files:\n",
" if os.path.basename(root).startswith('checkpoint_'):\n",
" checkpoints.append(path.join(root, name))\n",
" return checkpoints"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Find checkpoints and last checkpoint number\n",
"checkpoint_files = find_checkpoints(training_artifacts_path)\n",
"\n",
"checkpoint_numbers = []\n",
"for file in checkpoint_files:\n",
" file = os.path.basename(file)\n",
" if file.startswith('checkpoint-') and not file.endswith('.tune_metadata'):\n",
" checkpoint_numbers.append(int(file.split('-')[1]))\n",
"\n",
"print(\"Checkpoints:\", checkpoint_numbers)\n",
"\n",
"last_checkpoint_number = max(checkpoint_numbers)\n",
"print(\"Last checkpoint number:\", last_checkpoint_number)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now we upload checkpoints to default datastore and create a file dataset. This dataset will be used to pass in the checkpoints to the rollout script."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Upload the checkpoint files and create a DataSet\n",
"from azureml.core import Dataset\n",
"\n",
"datastore = ws.get_default_datastore()\n",
"checkpoint_dataref = datastore.upload_files(checkpoint_files, target_path='cartpole_checkpoints_' + run_id, overwrite=True)\n",
"checkpoint_ds = Dataset.File.from_files(checkpoint_dataref)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"To verify, we can print out the number (and paths) of all the files in the dataset."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"artifacts_paths = checkpoint_ds.to_path()\n",
"print(\"Number of files in dataset:\", len(artifacts_paths))\n",
"\n",
"# Uncomment line below to print all file paths\n",
@@ -505,36 +572,6 @@
"\n",
"The checkpoints dataset will be accessible to the rollout script as a mounted folder. The mounted folder and the checkpoint number, passed in via `checkpoint-number`, will be used to create a path to the checkpoint we are going to evaluate. The created checkpoint path then will be passed into RLlib rollout script for evaluation.\n",
"\n",
"Let's find the checkpoints and the last checkpoint number first."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Find checkpoints and last checkpoint number\n",
"checkpoint_files = [\n",
" os.path.basename(file) for file in training_artifacts_ds.to_path() \\\n",
" if os.path.basename(file).startswith('checkpoint-') and \\\n",
" not os.path.basename(file).endswith('tune_metadata')\n",
"]\n",
"\n",
"checkpoint_numbers = []\n",
"for file in checkpoint_files:\n",
" checkpoint_numbers.append(int(file.split('-')[1]))\n",
"\n",
"print(\"Checkpoints:\", checkpoint_numbers)\n",
"\n",
"last_checkpoint_number = max(checkpoint_numbers)\n",
"print(\"Last checkpoint number:\", last_checkpoint_number)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now let's configure rollout estimator. Note that we use the last checkpoint for evaluation. The assumption is that the last checkpoint points to our best trained agent. You may change this to any of the checkpoint numbers printed above and observe the effect."
]
},
@@ -576,8 +613,8 @@
" \n",
" # Data inputs\n",
" inputs=[\n",
" training_artifacts_ds.as_named_input('artifacts_dataset'),\n",
" training_artifacts_ds.as_named_input('artifacts_path').as_mount()],\n",
" checkpoint_ds.as_named_input('artifacts_dataset'),\n",
" checkpoint_ds.as_named_input('artifacts_path').as_mount()],\n",
" \n",
" # The Azure Machine Learning compute target\n",
" compute_target=compute_target,\n",

View File

@@ -118,6 +118,8 @@
"\n",
"A compute target is a designated compute resource where you run your training and simulation scripts. This location may be your local machine or a cloud-based compute resource. The code below shows how to create a cloud-based compute target. For more information see [What are compute targets in Azure Machine Learning?](https://docs.microsoft.com/en-us/azure/machine-learning/concept-compute-target)\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"**Note: Creation of a compute resource can take several minutes**. Please make sure to change `STANDARD_D2_V2` to a [size available in your region](https://azure.microsoft.com/en-us/global-infrastructure/services/?products=virtual-machines)."
]
},
@@ -472,61 +474,14 @@
"from os import path\n",
"from distutils import dir_util\n",
"\n",
"path_prefix = path.join(\"logs\", training_algorithm)\n",
"print(\"Path prefix:\", path_prefix)\n",
"training_artifacts_path = path.join(\"logs\", training_algorithm)\n",
"print(\"Training artifacts path:\", training_artifacts_path)\n",
"\n",
"if path.exists(path_prefix):\n",
" dir_util.remove_tree(path_prefix)\n",
"if path.exists(training_artifacts_path):\n",
" dir_util.remove_tree(training_artifacts_path)\n",
"\n",
"# Uncomment line below to download run artifacts to local compute\n",
"#child_run_0.download_files(path_prefix)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Create a dataset of training artifacts\n",
"To evaluate a trained policy (a checkpoint) we need to make the checkpoint accessible to the rollout script. All the training artifacts are stored in workspace default datastore under **azureml/&lt;run_id&gt;** directory.\n",
"\n",
"Here we create a file dataset from the stored artifacts, and then use this dataset to feed these data to rollout estimator."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Dataset\n",
"\n",
"run_id = child_run_0.id # Or set to run id of a completed run (e.g. 'rl-cartpole-v0_1587572312_06e04ace_head')\n",
"run_artifacts_path = os.path.join('azureml', run_id)\n",
"print(\"Run artifacts path:\", run_artifacts_path)\n",
"\n",
"# Create a file dataset object from the files stored on default datastore\n",
"datastore = ws.get_default_datastore()\n",
"training_artifacts_ds = Dataset.File.from_files(datastore.path(os.path.join(run_artifacts_path, '**')))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"To verify, we can print out the number (and paths) of all the files in the dataset, as follows."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"artifacts_paths = training_artifacts_ds.to_path()\n",
"print(\"Number of files in dataset:\", len(artifacts_paths))\n",
"\n",
"# Uncomment line below to print all file paths\n",
"#print(\"Artifacts dataset file paths: \", artifacts_paths)"
"# Download run artifacts to local compute\n",
"child_run_0.download_files(training_artifacts_path)"
]
},
{
@@ -548,21 +503,6 @@
"source": [
"import shutil\n",
"\n",
"# A helper function to download movies from a dataset to local directory\n",
"def download_movies(artifacts_ds, movies, destination):\n",
" # Create the local destination directory \n",
" if path.exists(destination):\n",
" dir_util.remove_tree(destination)\n",
" dir_util.mkpath(destination)\n",
"\n",
" for i, artifact in enumerate(artifacts_ds.to_path()):\n",
" if artifact in movies:\n",
" print('Downloading {} ...'.format(artifact))\n",
" artifacts_ds.skip(i).take(1).download(target_path=destination, overwrite=True)\n",
"\n",
" print('Downloading movies completed!')\n",
"\n",
"\n",
"# A helper function to find movies in a directory\n",
"def find_movies(movie_path):\n",
" print(\"Looking in path:\", movie_path)\n",
@@ -588,34 +528,6 @@
" )"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now let's find the first and the last recorded videos in training artifacts dataset and download them to a local directory."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Find first and last movie\n",
"mp4_files = [file for file in training_artifacts_ds.to_path() if file.endswith('.mp4')]\n",
"mp4_files.sort()\n",
"\n",
"first_movie = mp4_files[0] if len(mp4_files) > 0 else None\n",
"last_movie = mp4_files[-1] if len(mp4_files) > 1 else None\n",
"\n",
"print(\"First movie:\", first_movie)\n",
"print(\"Last movie:\", last_movie)\n",
"\n",
"# Download movies\n",
"training_movies_path = path.join(\"training\", \"videos\")\n",
"download_movies(training_artifacts_ds, [first_movie, last_movie], training_movies_path)"
]
},
{
"cell_type": "markdown",
"metadata": {},
@@ -629,7 +541,7 @@
"metadata": {},
"outputs": [],
"source": [
"mp4_files = find_movies(training_movies_path)\n",
"mp4_files = find_movies(training_artifacts_path)\n",
"mp4_files.sort()"
]
},
@@ -702,16 +614,31 @@
"metadata": {},
"outputs": [],
"source": [
"# Find checkpoints and last checkpoint number\n",
"checkpoint_files = [\n",
" os.path.basename(file) for file in training_artifacts_ds.to_path() \\\n",
" if os.path.basename(file).startswith('checkpoint-') and \\\n",
" not os.path.basename(file).endswith('tune_metadata')\n",
"]\n",
"# A helper function to find checkpoint files in a directory\n",
"def find_checkpoints(file_path):\n",
" print(\"Looking in path:\", file_path)\n",
" checkpoints = []\n",
" for root, _, files in os.walk(file_path):\n",
" for name in files:\n",
" if os.path.basename(root).startswith('checkpoint_'):\n",
" checkpoints.append(path.join(root, name))\n",
" return checkpoints\n",
"\n",
"checkpoint_files = find_checkpoints(training_artifacts_path)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Find checkpoints and last checkpoint number\n",
"checkpoint_numbers = []\n",
"for file in checkpoint_files:\n",
" checkpoint_numbers.append(int(file.split('-')[1]))\n",
" file = os.path.basename(file)\n",
" if file.startswith('checkpoint-') and not file.endswith('.tune_metadata'):\n",
" checkpoint_numbers.append(int(file.split('-')[-1]))\n",
"\n",
"print(\"Checkpoints:\", checkpoint_numbers)\n",
"\n",
@@ -719,6 +646,20 @@
"print(\"Last checkpoint number:\", last_checkpoint_number)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Upload the checkpoint files and create a DataSet\n",
"from azureml.core import Dataset\n",
"\n",
"datastore = ws.get_default_datastore()\n",
"checkpoint_dataref = datastore.upload_files(checkpoint_files, target_path='cartpole_checkpoints_' + run_id, overwrite=True)\n",
"checkpoint_ds = Dataset.File.from_files(checkpoint_dataref)"
]
},
{
"cell_type": "markdown",
"metadata": {},
@@ -794,8 +735,8 @@
" \n",
" # Data inputs\n",
" inputs=[\n",
" training_artifacts_ds.as_named_input('artifacts_dataset'),\n",
" training_artifacts_ds.as_named_input('artifacts_path').as_mount()],\n",
" checkpoint_ds.as_named_input('artifacts_dataset'),\n",
" checkpoint_ds.as_named_input('artifacts_path').as_mount()],\n",
" \n",
" # The Azure Machine Learning compute target set up for Ray head nodes\n",
" compute_target=compute_target,\n",
@@ -877,16 +818,15 @@
"print('Number of child runs:', len(child_runs))\n",
"child_run_0 = child_runs[0]\n",
"\n",
"run_id = child_run_0.id # Or set to run id of a completed run (e.g. 'rl-cartpole-v0_1587572312_06e04ace_head')\n",
"run_artifacts_path = os.path.join('azureml', run_id)\n",
"print(\"Run artifacts path:\", run_artifacts_path)\n",
"# Download rollout artifacts\n",
"rollout_artifacts_path = path.join(\"logs\", \"rollout\")\n",
"print(\"Rollout artifacts path:\", rollout_artifacts_path)\n",
"\n",
"# Create a file dataset object from the files stored on default datastore\n",
"datastore = ws.get_default_datastore()\n",
"rollout_artifacts_ds = Dataset.File.from_files(datastore.path(os.path.join(run_artifacts_path, '**')))\n",
"if path.exists(rollout_artifacts_path):\n",
" dir_util.remove_tree(rollout_artifacts_path)\n",
"\n",
"artifacts_paths = rollout_artifacts_ds.to_path()\n",
"print(\"Number of files in dataset:\", len(artifacts_paths))"
"# Download videos to local compute\n",
"child_run_0.download_files(\"logs/video\", output_directory = rollout_artifacts_path)"
]
},
{
@@ -902,20 +842,11 @@
"metadata": {},
"outputs": [],
"source": [
"# Find last movie\n",
"mp4_files = [file for file in rollout_artifacts_ds.to_path() if file.endswith('.mp4')]\n",
"mp4_files.sort()\n",
"\n",
"last_movie = mp4_files[-1] if len(mp4_files) > 1 else None\n",
"print(\"Last movie:\", last_movie)\n",
"\n",
"# Download last movie\n",
"rollout_movies_path = path.join(\"rollout\", \"videos\")\n",
"download_movies(rollout_artifacts_ds, [last_movie], rollout_movies_path)\n",
"\n",
"# Look for the downloaded movie in local directory\n",
"mp4_files = find_movies(rollout_movies_path)\n",
"mp4_files.sort()"
"mp4_files = find_movies(rollout_artifacts_path)\n",
"mp4_files.sort()\n",
"last_movie = mp4_files[-1] if len(mp4_files) > 1 else None\n",
"print(\"Last movie:\", last_movie)"
]
},
{
@@ -958,16 +889,12 @@
"#compute_target.delete()\n",
"\n",
"# To delete downloaded training artifacts\n",
"#if os.path.exists(path_prefix):\n",
"# dir_util.remove_tree(path_prefix)\n",
"\n",
"# To delete downloaded training videos\n",
"#if path.exists(training_movies_path):\n",
"# dir_util.remove_tree(training_movies_path)\n",
"#if os.path.exists(training_artifacts_path):\n",
"# dir_util.remove_tree(training_artifacts_path)\n",
"\n",
"# To delete downloaded rollout videos\n",
"#if path.exists(rollout_movies_path):\n",
"# dir_util.remove_tree(rollout_movies_path)"
"#if path.exists(rollout_artifacts_path):\n",
"# dir_util.remove_tree(rollout_artifacts_path)"
]
},
{
@@ -984,6 +911,9 @@
"authors": [
{
"name": "hoazari"
},
{
"name": "dasommer"
}
],
"kernelspec": {

View File

@@ -138,6 +138,8 @@
"\n",
"A compute target is a designated compute resource where you run your training script. For more information, see [What are compute targets in Azure Machine Learning service?](https://docs.microsoft.com/en-us/azure/machine-learning/concept-compute-target).\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist.\n",
"\n",
"#### CPU target for Ray head\n",
"\n",
"In the experiment setup for this tutorial, the Ray head node will\n",

View File

@@ -35,7 +35,7 @@
"source": [
"## Install required packages\n",
"\n",
"This notebook works with Fairlearn v0.4.6, and not later versions. If needed, please uncomment and run the following cell:"
"This notebook works with Fairlearn v0.7.0, but not with versions pre-v0.5.0. If needed, please uncomment and run the following cell:"
]
},
{
@@ -44,7 +44,7 @@
"metadata": {},
"outputs": [],
"source": [
"# %pip install --upgrade fairlearn==0.4.6"
"# %pip install --upgrade fairlearn>=0.6.2"
]
},
{
@@ -70,21 +70,18 @@
"outputs": [],
"source": [
"from fairlearn.reductions import GridSearch\n",
"from fairlearn.reductions import DemographicParity, ErrorRate\n",
"from fairlearn.reductions import DemographicParity\n",
"\n",
"from sklearn.compose import ColumnTransformer, make_column_selector\n",
"from sklearn.preprocessing import LabelEncoder,StandardScaler\n",
"from sklearn.preprocessing import LabelEncoder, StandardScaler, OneHotEncoder\n",
"from sklearn.linear_model import LogisticRegression\n",
"from sklearn.pipeline import Pipeline\n",
"from sklearn.impute import SimpleImputer\n",
"from sklearn.preprocessing import StandardScaler, OneHotEncoder\n",
"from sklearn.svm import SVC\n",
"from sklearn.metrics import accuracy_score\n",
"\n",
"import pandas as pd\n",
"\n",
"# SHAP Tabular Explainer\n",
"from interpret.ext.blackbox import KernelExplainer\n",
"from interpret.ext.blackbox import MimicExplainer\n",
"from interpret.ext.glassbox import LGBMExplainableModel"
]
@@ -340,11 +337,11 @@
"metadata": {},
"outputs": [],
"source": [
"from fairlearn.widget import FairlearnDashboard\n",
"from raiwidgets import FairnessDashboard\n",
"\n",
"y_pred = model.predict(X_test)\n",
"\n",
"FairlearnDashboard(sensitive_features=sensitive_features_test,\n",
"FairnessDashboard(sensitive_features=sensitive_features_test,\n",
" y_true=y_test,\n",
" y_pred=y_pred)"
]
@@ -402,7 +399,7 @@
"sweep.fit(X_train_prep, y_train,\n",
" sensitive_features=sensitive_features_train.sex)\n",
"\n",
"predictors = sweep._predictors"
"predictors = sweep.predictors_"
]
},
{
@@ -468,7 +465,7 @@
"for name, predictor in dominant_models_dict.items():\n",
" dominant_all[name] = predictor.predict(X_test_prep)\n",
"\n",
"FairlearnDashboard(sensitive_features=sensitive_features_test, \n",
"FairnessDashboard(sensitive_features=sensitive_features_test, \n",
" y_true=y_test,\n",
" y_pred=dominant_all)"
]
@@ -563,7 +560,7 @@
"source": [
"import joblib\n",
"import os\n",
"from azureml.core import Model, Experiment, Run\n",
"from azureml.core import Model, Experiment\n",
"\n",
"os.makedirs('models', exist_ok=True)\n",
"def register_model(name, model):\n",

View File

@@ -4,9 +4,9 @@ dependencies:
- azureml-sdk
- azureml-interpret
- azureml-contrib-fairness
- fairlearn==0.4.6
- fairlearn>=0.6.2
- matplotlib
- azureml-dataset-runtime
- ipywidgets
- raiwidgets
- raiwidgets~=0.7.0
- liac-arff

View File

@@ -10,6 +10,7 @@ from contextlib import closing
import gzip
import pandas as pd
from sklearn.utils import Bunch
from time import sleep
def _is_gzip_encoded(_fsrc):
@@ -29,7 +30,7 @@ _categorical_columns = [
def fetch_census_dataset():
"""Fetch the Adult Census Dataset
"""Fetch the Adult Census Dataset.
This uses a particular URL for the Adult Census dataset. The code
is a simplified version of fetch_openml() in sklearn.
@@ -45,6 +46,11 @@ def fetch_census_dataset():
filename = "1595261.gz"
data_url = "https://rainotebookscdn.blob.core.windows.net/datasets/"
remaining_attempts = 5
sleep_duration = 10
while remaining_attempts > 0:
try:
urlretrieve(data_url + filename, filename)
http_stream = gzip.GzipFile(filename=filename, mode='rb')
@@ -56,10 +62,22 @@ def fetch_census_dataset():
stream = _stream_generator(http_stream)
data = arff.load(stream)
except Exception as exc: # noqa: B902
remaining_attempts -= 1
print("Error downloading dataset from {} ({} attempt(s) remaining)"
.format(data_url, remaining_attempts))
print(exc)
sleep(sleep_duration)
sleep_duration *= 2
continue
else:
# dataset successfully downloaded
break
else:
raise Exception("Could not retrieve dataset from {}.".format(data_url))
attributes = OrderedDict(data['attributes'])
arff_columns = list(attributes)
raw_df = pd.DataFrame(data=data['data'], columns=arff_columns)
target_column_name = 'class'

View File

@@ -100,7 +100,7 @@
"\n",
"# Check core SDK version number\n",
"\n",
"print(\"This notebook was created using SDK version 1.27.0, you are currently running version\", azureml.core.VERSION)"
"print(\"This notebook was created using SDK version 1.32.0, you are currently running version\", azureml.core.VERSION)"
]
},
{

View File

@@ -390,7 +390,9 @@
"source": [
"## Once more, with an AmlCompute cluster\n",
"\n",
"Just to prove we can, let's create an AmlCompute CPU cluster, and run our demo there, as well."
"Just to prove we can, let's create an AmlCompute CPU cluster, and run our demo there, as well.\n",
"\n",
"> Note that if you have an AzureML Data Scientist role, you will not have permission to create compute resources. Talk to your workspace or IT admin to create the compute targets described in this section, if they do not already exist."
]
},
{

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