Add HTML comments for MS short links (#34903)

content/admin/code-security/managing-github-advanced-security-for-your-enterprise/configuring-code-scanning-for-your-appliance.md

@@ -16,6 +16,9 @@ topics:
   - Enterprise
   - Security
 ---
+<!--The CodeQL CLI man pages include a link to a section in this article. If you rename this article,
+make sure that you also update the MS short link: https://aka.ms/code-scanning-docs/configuring-ghes.-->
+
 
 {% data reusables.code-scanning.beta %}
 
@@ -41,8 +44,8 @@ You can configure {% data variables.product.prodname_code_scanning %} to run {%
 
 ## Running {% data variables.product.prodname_code_scanning %} using {% data variables.product.prodname_actions %}
 
-<!-- Note that the CodeQL CLI manual pages link to this heading: https://aka.ms/code-scanning-docs-configuring-ghes.
-If you edit this heading, update the short link too.-->
+<!--The CodeQL CLI man pages include a link to this section of the article. If you rename this section,
+make sure that you also update the MS short link: https://aka.ms/code-scanning-docs/configuring-ghes.-->
 
 ### Setting up a self-hosted runner
 

content/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/customizing-code-scanning.md

@@ -24,7 +24,8 @@ topics:
   - Python
 shortTitle: Customize code scanning
 ---
-
+<!--The CodeQL CLI man pages include a link to a section of the article. If you rename this article,
+make sure that you also update the MS short link: https://aka.ms/code-scanning-docs/config-file.-->
 
 {% data reusables.code-scanning.beta %}
 {% data reusables.code-scanning.enterprise-enable-code-scanning-actions %}
@@ -404,6 +405,9 @@ In the following example, the `+` symbol ensures that the specified additional {
 
 ## Using a custom configuration file
 
+<!--The CodeQL CLI man pages include a link to this section of the article. If you rename this section,
+make sure that you also update the MS short link: https://aka.ms/code-scanning-docs/config-file.-->
+
 A custom configuration file is an alternative way to specify additional {% ifversion codeql-packs %}packs and {% endif %}queries to run. You can also use the file to disable the default queries{% ifversion code-scanning-exclude-queries-from-analysis %}, exclude or include specific queries,{% endif %} and to specify which directories to scan during analysis.
 
 In the workflow file, use the `config-file` parameter of the `init` action to specify the path to the configuration file you want to use. This example loads the configuration file _./.github/codeql/codeql-config.yml_.

content/code-security/codeql-cli/using-the-codeql-cli/creating-codeql-databases.md

@@ -12,6 +12,8 @@ topics:
   - Code scanning
   - CodeQL
 ---
+<!--The CodeQL CLI man pages include a link to a section in this article. If you rename this article,
+make sure that you also update the MS short link: https://aka.ms/codeql-docs/indirect-tracing.-->
 
 {% data reusables.codeql-cli.codeql-site-migration-note %}
 
@@ -241,6 +243,9 @@ This command runs a custom script that contains all of the commands required to
 
 ### Using indirect build tracing
 
+<!--The CodeQL CLI man pages include a link to this section of the article. If you rename this section,
+make sure that you also update the MS short link: https://aka.ms/codeql-docs/indirect-tracing.-->
+
 If the {% data variables.product.prodname_codeql_cli %} autobuilders for compiled languages do not work with your CI workflow and you cannot wrap invocations of build commands with `codeql database trace-command`, you can use indirect build tracing to create a {% data variables.product.prodname_codeql %} database. To use indirect build tracing, your CI system must be able to set custom environment variables for each build action.
 
 To create a {% data variables.product.prodname_codeql %} database with indirect build tracing, run the following command from the checkout root of your project:

content/code-security/codeql-cli/using-the-codeql-cli/extractor-options.md

@@ -12,6 +12,8 @@ topics:
   - Code scanning
   - CodeQL
 ---
+<!--The CodeQL CLI man pages include a link to this article. If you rename this article,
+make sure that you also update the MS short link: https://aka.ms/codeql-cli-docs/extractor-options.-->
 
 {% data reusables.codeql-cli.codeql-site-migration-note %}