Update CodeQL CLI manual (#43241)

Co-authored-by: Rachael Sewell <rachmari@github.com>
Co-authored-by: Felicity Chapman <felicitymay@github.com>

content/code-security/codeql-cli/codeql-cli-manual/database-trace-command.md

@@ -1,6 +1,6 @@
 ---
 title: database trace-command
-versions:
+versions: # DO NOT MANUALLY EDIT. CHANGES WILL BE OVERWRITTEN BY A 🤖
   fpt: '*'
   ghae: '*'
   ghec: '*'
@@ -36,7 +36,9 @@ This runs a single given command line under a tracer, thus possibly
 performing some extraction, but does not finalize the resulting CodeQL
 database.
 
-## Primary options
+## Options
+
+### Primary Options
 
 #### `<database>` <!-- markdownlint-disable-line heading-increment -->