Files
impala/testdata/bin/load_nested.py
stiga-huang 9686545bfd IMPALA-6503: Support reading complex types from ORC
We've supported reading primitive types from ORC files (IMPALA-5717).
In this patch we add support for complex types (struct/array/map).

In IMPALA-5717, we leverage the ORC lib to parse ORC binaries (data in
io buffer read from DiskIoMgr). The ORC lib can materialize ORC column
binaries into its representation (orc::ColumnVectorBatch). Then we
transform values in orc::ColumnVectorBatch into impala::Tuples in
hdfs-orc-scanner. We don't need to do anything about decoding/decompression
since they are handled by the ORC lib. Fortunately, the ORC lib already
supports complex types, we can still leverage it to support complex types.

What we need to add in IMPALA-6503 are two things:
1. Specify which nested columns we need in the form required by the ORC
  lib (Get list of ORC type ids from tuple descriptors)
2. Transform outputs of ORC lib (nested orc::ColumnVectorBatch) into
  Impala's representation (Slots/Tuples/RowBatches)

To format the materialization, we implement several ORC column readers
in hdfs-orc-scanner. Each kind of reader treats a column type and
transforms outputs of the ORC lib into tuple/slot values.

Tests:
* Enable existing tests for complex types (test_nested_types.py,
test_tpch_nested_queries.py) for ORC.
* Run exhaustive tests in DEBUG and RELEASE builds.

Change-Id: I244dc9d2b3e425393f90e45632cb8cdbea6cf790
Reviewed-on: http://gerrit.cloudera.org:8080/12168
Reviewed-by: Impala Public Jenkins <impala-public-jenkins@cloudera.com>
Tested-by: Impala Public Jenkins <impala-public-jenkins@cloudera.com>
2019-03-08 04:39:08 +00:00

386 lines
15 KiB
Python
Executable File

#!/usr/bin/env impala-python
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
'''This script creates a nested version of TPC-H. Non-nested TPC-H must already be
loaded.
'''
import logging
import os
from argparse import ArgumentDefaultsHelpFormatter, ArgumentParser
import tests.comparison.cli_options as cli_options
LOG = logging.getLogger(os.path.splitext(os.path.basename(__file__))[0])
# We use Hive to transform nested text tables into parquet/orc tables. To control the
# compression, the property keys differ from file formats (see COMPRESSION_KEYS_MAP).
# The property values also differ from short names used in Impala (e.g. snap, def).
# So we define COMPRESSION_VALUES_MAP for the mapping.
COMPRESSION_KEYS_MAP = {
"parquet": "parquet.compression",
"orc": "orc.compress"
}
COMPRESSION_VALUES_MAP = {
# Currently, only three codecs are supported in Hive for Parquet. See codes in
# org.apache.parquet.hadoop.metadata.CompressionCodecName (parquet-hadoop-bundle)
"parquet": {
"none": "SNAPPY",
"snap": "SNAPPY",
"gzip": "GZIP",
"lzo": "LZO"
},
# Currently, only three codecs are supported in Hive for ORC. See Hive codes in
# org.apache.orc.impl.WriterImpl#createCodec (in module hive-orc)
"orc": {
"none": "NONE",
"def": "ZLIB",
"snap": "SNAPPY"
}
}
# These vars are set after arg parsing.
cluster = None
source_db = None
target_db = None
file_format = None
compression_key = None
compression_value = None
chunks = None
def is_loaded():
with cluster.impala.cursor() as cursor:
try:
# If the part table exists, assume everything is already loaded.
cursor.execute("DESCRIBE %s.part" % target_db)
return True
except Exception as e:
if "AnalysisException" not in str(e):
raise
return False
def load():
# As of this writing, Impala isn't able to write nested data in parquet format.
# Instead, the data will be written in text format, then Hive will be used to
# convert from text to parquet.
with cluster.impala.cursor() as impala:
impala.ensure_empty_db(target_db)
impala.execute("USE %s" % target_db)
sql_params = {
"source_db": source_db,
"target_db": target_db,
"file_format": file_format,
"compression_key": compression_key,
"compression_value": compression_value,
"chunks": chunks,
"warehouse_dir": cluster.hive.warehouse_dir}
# Split table creation into multiple queries or "chunks" so less memory is needed.
for chunk_idx in xrange(chunks):
sql_params["chunk_idx"] = chunk_idx
# Create the nested data in text format. The \00#'s are nested field terminators,
# where the numbers correspond to the nesting level.
tmp_orders_sql = r"""
SELECT STRAIGHT_JOIN
o_orderkey, o_custkey, o_orderstatus, o_totalprice, o_orderdate,
o_orderpriority, o_clerk, o_shippriority, o_comment,
GROUP_CONCAT(
CONCAT(
CAST(l_partkey AS STRING), '\005',
CAST(l_suppkey AS STRING), '\005',
CAST(l_linenumber AS STRING), '\005',
CAST(l_quantity AS STRING), '\005',
CAST(l_extendedprice AS STRING), '\005',
CAST(l_discount AS STRING), '\005',
CAST(l_tax AS STRING), '\005',
CAST(l_returnflag AS STRING), '\005',
CAST(l_linestatus AS STRING), '\005',
CAST(l_shipdate AS STRING), '\005',
CAST(l_commitdate AS STRING), '\005',
CAST(l_receiptdate AS STRING), '\005',
CAST(l_shipinstruct AS STRING), '\005',
CAST(l_shipmode AS STRING), '\005',
CAST(l_comment AS STRING)
), '\004'
) AS lineitems_string
FROM {source_db}.lineitem
INNER JOIN [SHUFFLE] {source_db}.orders ON o_orderkey = l_orderkey
WHERE o_orderkey % {chunks} = {chunk_idx}
GROUP BY 1, 2, 3, 4, 5, 6, 7, 8, 9""".format(**sql_params)
LOG.info("Creating temp orders (chunk {chunk} of {chunks})".format(
chunk=(chunk_idx + 1), chunks=chunks))
if chunk_idx == 0:
impala.execute("CREATE TABLE tmp_orders_string AS " + tmp_orders_sql)
else:
impala.execute("INSERT INTO TABLE tmp_orders_string " + tmp_orders_sql)
for chunk_idx in xrange(chunks):
sql_params["chunk_idx"] = chunk_idx
tmp_customer_sql = r"""
SELECT STRAIGHT_JOIN
c_custkey, c_name, c_address, c_nationkey, c_phone, c_acctbal, c_mktsegment,
c_comment,
GROUP_CONCAT(
CONCAT(
CAST(o_orderkey AS STRING), '\003',
CAST(o_orderstatus AS STRING), '\003',
CAST(o_totalprice AS STRING), '\003',
CAST(o_orderdate AS STRING), '\003',
CAST(o_orderpriority AS STRING), '\003',
CAST(o_clerk AS STRING), '\003',
CAST(o_shippriority AS STRING), '\003',
CAST(o_comment AS STRING), '\003',
CAST(lineitems_string AS STRING)
), '\002'
) orders_string
FROM tmp_orders_string
RIGHT JOIN [SHUFFLE] {source_db}.customer ON c_custkey = o_custkey
WHERE c_custkey % {chunks} = {chunk_idx}
GROUP BY 1, 2, 3, 4, 5, 6, 7, 8""".format(**sql_params)
LOG.info("Creating temp customers (chunk {chunk} of {chunks})".format(
chunk=(chunk_idx + 1), chunks=chunks))
if chunk_idx == 0:
impala.execute("CREATE TABLE tmp_customer_string AS " + tmp_customer_sql)
else:
impala.execute("INSERT INTO TABLE tmp_customer_string " + tmp_customer_sql)
# Create a table with nested schema to read the text file we generated above. Impala
# is currently unable to read from this table. We will use Hive to read from it in
# order to convert the table to parquet.
impala.execute("""
CREATE EXTERNAL TABLE tmp_customer (
c_custkey BIGINT,
c_name STRING,
c_address STRING,
c_nationkey SMALLINT,
c_phone STRING,
c_acctbal DECIMAL(12, 2),
c_mktsegment STRING,
c_comment STRING,
c_orders ARRAY<STRUCT<
o_orderkey: BIGINT,
o_orderstatus: STRING,
o_totalprice: DECIMAL(12, 2),
o_orderdate: STRING,
o_orderpriority: STRING,
o_clerk: STRING,
o_shippriority: INT,
o_comment: STRING,
o_lineitems: ARRAY<STRUCT<
l_partkey: BIGINT,
l_suppkey: BIGINT,
l_linenumber: INT,
l_quantity: DECIMAL(12, 2),
l_extendedprice: DECIMAL(12, 2),
l_discount: DECIMAL(12, 2),
l_tax: DECIMAL(12, 2),
l_returnflag: STRING,
l_linestatus: STRING,
l_shipdate: STRING,
l_commitdate: STRING,
l_receiptdate: STRING,
l_shipinstruct: STRING,
l_shipmode: STRING,
l_comment: STRING>>>>)
STORED AS TEXTFILE
LOCATION '{warehouse_dir}/{target_db}.db/tmp_customer_string'"""\
.format(**sql_params))
# Create the temporary region table with nested nation. This table doesn't seem to
# get too big so we don't partition it (like we did with customer).
LOG.info("Creating temp regions")
impala.execute(r"""
CREATE TABLE tmp_region_string
AS SELECT
r_regionkey, r_name, r_comment,
GROUP_CONCAT(
CONCAT(
CAST(n_nationkey AS STRING), '\003',
CAST(n_name AS STRING), '\003',
CAST(n_comment AS STRING)
), '\002'
) nations_string
FROM {source_db}.region
JOIN {source_db}.nation ON r_regionkey = n_regionkey
GROUP BY 1, 2, 3""".format(**sql_params))
impala.execute("""
CREATE EXTERNAL TABLE tmp_region (
r_regionkey SMALLINT,
r_name STRING,
r_comment STRING,
r_nations ARRAY<STRUCT<
n_nationkey: SMALLINT,
n_name: STRING,
n_comment: STRING>>)
STORED AS TEXTFILE
LOCATION '{warehouse_dir}/{target_db}.db/tmp_region_string'"""\
.format(**sql_params))
# Several suppliers supply the same part so the actual part data is not nested to
# avoid duplicated data.
LOG.info("Creating temp suppliers")
impala.execute(r"""
CREATE TABLE tmp_supplier_string AS
SELECT
s_suppkey, s_name, s_address, s_nationkey, s_phone, s_acctbal, s_comment,
GROUP_CONCAT(
CONCAT(
CAST(ps_partkey AS STRING), '\003',
CAST(ps_availqty AS STRING), '\003',
CAST(ps_supplycost AS STRING), '\003',
CAST(ps_comment AS STRING)
), '\002'
) partsupps_string
FROM {source_db}.supplier
JOIN {source_db}.partsupp ON s_suppkey = ps_suppkey
GROUP BY 1, 2, 3, 4, 5, 6, 7""".format(**sql_params))
impala.execute("""
CREATE EXTERNAL TABLE tmp_supplier (
s_suppkey BIGINT,
s_name STRING,
s_address STRING,
s_nationkey SMALLINT,
s_phone STRING,
s_acctbal DECIMAL(12,2),
s_comment STRING,
s_partsupps ARRAY<STRUCT<
ps_partkey: BIGINT,
ps_availqty: INT,
ps_supplycost: DECIMAL(12,2),
ps_comment: STRING>>)
STORED AS TEXTFILE
LOCATION '{warehouse_dir}/{target_db}.db/tmp_supplier_string'"""\
.format(**sql_params))
# The part table doesn't have nesting. If it's a parquet table, we create it in Impala
LOG.info("Creating parts")
if file_format == "parquet":
impala.execute("""
CREATE EXTERNAL TABLE part
STORED AS PARQUET
AS SELECT * FROM {source_db}.part""".format(**sql_params))
cluster.hdfs.ensure_home_dir()
if file_format == "orc":
# For ORC format, we create the 'part' table by Hive
with cluster.hive.cursor(db_name=target_db) as hive:
hive.execute("""
CREATE TABLE part
STORED AS ORC
TBLPROPERTIES('{compression_key}'='{compression_value}')
AS SELECT * FROM {source_db}.part""".format(**sql_params))
# Hive is used to convert the data into parquet/orc and drop all the temp tables.
# The Hive SET values are necessary to prevent Impala remote reads of parquet files.
# These values are taken from http://blog.cloudera.com/blog/2014/12/the-impala-cookbook.
with cluster.hive.cursor(db_name=target_db) as hive:
LOG.info("Converting temp tables")
for stmt in """
SET mapred.min.split.size=1073741824;
SET parquet.block.size=10737418240;
SET dfs.block.size=1073741824;
CREATE TABLE customer
STORED AS {file_format}
TBLPROPERTIES('{compression_key}'='{compression_value}')
AS SELECT * FROM tmp_customer;
CREATE TABLE region
STORED AS {file_format}
TBLPROPERTIES('{compression_key}'='{compression_value}')
AS SELECT * FROM tmp_region;
CREATE TABLE supplier
STORED AS {file_format}
TBLPROPERTIES('{compression_key}'='{compression_value}')
AS SELECT * FROM tmp_supplier;""".format(**sql_params).split(";"):
if not stmt.strip():
continue
LOG.info("Executing: {0}".format(stmt))
hive.execute(stmt)
with cluster.impala.cursor(db_name=target_db) as impala:
# Drop the temporary tables. These temporary tables were created
# in Impala, so they exist in Impala's metadata. This drop is executed by
# Impala so that the metadata is automatically updated.
for stmt in """
DROP TABLE tmp_orders_string;
DROP TABLE tmp_customer_string;
DROP TABLE tmp_customer;
DROP TABLE tmp_region_string;
DROP TABLE tmp_region;
DROP TABLE tmp_supplier;
DROP TABLE tmp_supplier_string;""".split(";"):
if not stmt.strip():
continue
LOG.info("Executing: {0}".format(stmt))
impala.execute(stmt)
impala.invalidate_metadata(table_name="customer")
impala.invalidate_metadata(table_name="part")
impala.invalidate_metadata(table_name="region")
impala.invalidate_metadata(table_name="supplier")
impala.compute_stats()
LOG.info("Done loading nested TPCH data")
if __name__ == "__main__":
parser = ArgumentParser(formatter_class=ArgumentDefaultsHelpFormatter)
cli_options.add_logging_options(parser)
cli_options.add_cluster_options(parser) # --cm-host and similar args added here
cli_options.add_kerberos_options(parser)
cli_options.add_ssl_options(parser)
parser.add_argument("-s", "--source-db", default="tpch_parquet")
parser.add_argument("-t", "--target-db", default="tpch_nested_parquet")
parser.add_argument("-f", "--table-format", default="parquet/none") # can be "orc/def"
parser.add_argument("-c", "-p", "--chunks", type=int, default=1)
args = parser.parse_args()
cli_options.configure_logging(args.log_level, debug_log_file=args.debug_log_file)
cluster = cli_options.create_cluster(args)
source_db = args.source_db
target_db = args.target_db
file_format, compression_value = args.table_format.split("/")
# 'compression_value' is one of [none,def,gzip,bzip,snap,lzo]. We should translate it
# into values that can be set to Hive.
if file_format not in COMPRESSION_KEYS_MAP:
raise Exception("Nested types in file format %s are not supported" % file_format)
compression_key = COMPRESSION_KEYS_MAP[file_format]
if compression_value not in COMPRESSION_VALUES_MAP[file_format]:
raise Exception("Loading %s tables in %s compression is not supported by Hive. "
"Supported compressions: %s"
% (file_format, compression_value,
str(COMPRESSION_VALUES_MAP[file_format].keys())))
compression_value = COMPRESSION_VALUES_MAP[file_format][compression_value]
chunks = args.chunks
if is_loaded():
LOG.info("Data is already loaded")
else:
load()