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Code Issues Projects Releases Wiki Activity

Add additional pre-commit hooks (#245)

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* Add and run end-of-file-fixer
* Add and run trailing-whitespace
* Add and run check-yaml
* Add and run check-json
* Add and run pretty-format-yaml
* Fix comment indentation
This commit is contained in:
Matt Kramer
2022-05-06 14:27:11 -05:00
committed by GitHub
parent 3347532f5e
commit cc6d6247a8
30 changed files with 172 additions and 158 deletions
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14
pyscriptjs/examples/simple_bioinformatics_tool.html
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@@ -16,7 +16,7 @@
<div class="hero-body">
<p class="title is-3">PyScript — Simple Bioinformatics Example <span class="tag is-white">v.1</span></p>
<p class="subtitle is-6">
Demonstrates the simple use of <a href="https://pyscript.net/" target="_blank"><code>PyScript</code></a>
Demonstrates the simple use of <a href="https://pyscript.net/" target="_blank"><code>PyScript</code></a>
in <strong>Bioinformatics/Computational Biology</strong> fields!
</p>
</div>
@@ -58,7 +58,7 @@
<!--- DNA Sequence Output -->
<label class="label">Output for the <code id="operation_name_output">given operation</code></label>
<div id="output"></div>
</div>
</div>
<br><br>
<!-- Footer -->
@@ -84,15 +84,15 @@ operation_element = Element("operation")
operation_name_output_element = Element("operation_name_output")
# DNA Sequene Operations
def return_reverse(dna_seq):
def return_reverse(dna_seq):
return dna_seq[::-1]
def return_complement(dna_seq):
def return_complement(dna_seq):
return dna_seq.translate(str.maketrans("ATCG", "TAGC"))
def return_reverse_complement(dna_seq):
def return_reverse_complement(dna_seq):
return dna_seq.translate(str.maketrans("ATCG", "TAGC"))[::-1]
# Check DNA seq is valid
def check_dna_seq(dna_seq):
def check_dna_seq(dna_seq):
return all(letter in dna_alphabet for letter in dna_seq.upper())
# Clear the form and output
@@ -115,7 +115,7 @@ def run(*args, **kwargs):
output_dna_seq = return_complement(dna_seq)
elif operation_name == "ReverseComplement":
output_dna_seq = return_reverse_complement(dna_seq)
# Output the result
output.write(output_dna_seq)
elif (dna_seq.strip() == "") or (dna_seq is None):