mirror of
https://github.com/pyscript/pyscript.git
synced 2025-12-22 11:45:28 -05:00
0b014eea56
* Execute pys-on* events when triggered, not at load Mimicing the behavior of Javascripts 'onLoad' event, we should not be executing the use code at page-load time, only when the event is triggered. * Update examples to new syntax * Fix merge issue * Await running event handler code * Restore pys-on* events with original behavior, deprecation warning * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * xfail toga example * Add missing { (typo) * Adjust callback chandling to make linter happy * Change alpha to latest (#760) * Don't create custom elements in main and fix various small issues on tests (#747) * Create custom elements when the runtime finishes loading * Remove xfails and fix repl integration test * Fix commented ignore * Address Antonio's comments * Fix bad rebase * Make ure to wait for repl to be in attached state before asserting content * Move createCustomeElement up so it runs before we close the loader, xfail flaky d3 test * Fix xfail * [pre-commit.ci] pre-commit autoupdate (#762) updates: - [github.com/pre-commit/mirrors-eslint: v8.23.0 → v8.23.1](https://github.com/pre-commit/mirrors-eslint/compare/v8.23.0...v8.23.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * change documentation to point to latest instead of frozen alpha (#764) * Toga example is xpass * Correct 'xpass' to 'xfail' mark Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Peter W <34256109+pww217@users.noreply.github.com> Co-authored-by: Fábio Rosado <fabiorosado@outlook.com>
130 lines
4.7 KiB
HTML
130 lines
4.7 KiB
HTML
<!DOCTYPE html>
|
|
<html>
|
|
<head>
|
|
<meta charset='utf-8'>
|
|
<meta http-equiv='X-UA-Compatible' content='IE=edge'>
|
|
<title>PyScript — Simple Bioinformatics Example</title>
|
|
<link rel="icon" type="image/x-icon" href="./favicon.png">
|
|
<meta name='viewport' content='width=device-width, initial-scale=1'>
|
|
<link rel='stylesheet' type='text/css' media='screen' href='https://cdn.jsdelivr.net/npm/bulma@0.9.3/css/bulma.min.css'>
|
|
<link rel="icon" type="image/png" href="https://user-images.githubusercontent.com/49681382/166738771-d0c26557-426c-4688-9641-8db5e6b08348.png" />
|
|
<script defer src="https://pyscript.net/latest/pyscript.js"></script>
|
|
</head>
|
|
<body>
|
|
|
|
<!-- Header -->
|
|
<section class="hero is-primary is-small">
|
|
<div class="hero-body">
|
|
<p class="title is-3">PyScript — Simple Bioinformatics Example <span class="tag is-white">v.1</span></p>
|
|
<p class="subtitle is-6">
|
|
Demonstrates the simple use of <a href="https://pyscript.net/" target="_blank"><code>PyScript</code></a>
|
|
in <strong>Bioinformatics/Computational Biology</strong> fields!
|
|
</p>
|
|
</div>
|
|
</section>
|
|
|
|
|
|
<!-- Main Content -->
|
|
<div class="container is-white is-fluid" style="margin-top:45px">
|
|
<p class="title is-3">🧬 DNA Sequence Tool</p>
|
|
|
|
<!--- DNA Sequence Input -->
|
|
<div class="field">
|
|
<label class="label">Input DNA Sequence</label>
|
|
<div class="control">
|
|
<textarea class="textarea" placeholder="GATTACA" id="dna_seq"></textarea>
|
|
</div>
|
|
</div>
|
|
|
|
<!-- Operation Selection -->
|
|
<label class="label">Pick the operation to be applied</label>
|
|
<div class="field has-addons">
|
|
<div class="control is-expanded">
|
|
<div class="select is-fullwidth">
|
|
<select name="operation" id="operation">
|
|
<option value="Reverse">Compute the reverse counterpart</option>
|
|
<option value="Complement">Compute the complement counterpart</option>
|
|
<option value="ReverseComplement">Compute the reverse complement counterpart</option>
|
|
</select>
|
|
</div>
|
|
</div>
|
|
<div class="control">
|
|
<button id="run" type="button" class="button is-primary" py-onClick="run()">Run!</button>
|
|
<button id="clear" type="button" class="button is-danger" py-onClick="clear()">Clear</button>
|
|
</div>
|
|
</div>
|
|
|
|
<hr>
|
|
|
|
<!--- DNA Sequence Output -->
|
|
<label class="label">Output for the <code id="operation_name_output">given operation</code></label>
|
|
<div id="output"></div>
|
|
</div>
|
|
|
|
<br><br>
|
|
<!-- Footer -->
|
|
<footer class="footer">
|
|
<div class="content has-text-centered">
|
|
<p>
|
|
Developed by <a href="mailto:furkanmtorun@gmail.com"><strong>Furkan M. Torun (@furkanmtorun)</strong></a>
|
|
<br>
|
|
<a href="https://github.com/furkanmtorun">GitHub</a>
|
|
| <a href="https://scholar.google.com/citations?user=d5ZyOZ4AAAAJ">Google Scholar</a>
|
|
| <a href="https://twitter.com/furkanmtorun">Twitter</a>
|
|
| <a href="https://www.linkedin.com/in/furkanmtorun/">LinkedIn</a>
|
|
</p>
|
|
</div>
|
|
</footer>
|
|
|
|
<py-script>
|
|
# Define HTML elements and inputs
|
|
dna_alphabet = "ATGC"
|
|
output = Element("output")
|
|
dna_seq_element = Element("dna_seq")
|
|
operation_element = Element("operation")
|
|
operation_name_output_element = Element("operation_name_output")
|
|
|
|
# DNA Sequene Operations
|
|
def return_reverse(dna_seq):
|
|
return dna_seq[::-1]
|
|
def return_complement(dna_seq):
|
|
return dna_seq.translate(str.maketrans("ATCG", "TAGC"))
|
|
def return_reverse_complement(dna_seq):
|
|
return dna_seq.translate(str.maketrans("ATCG", "TAGC"))[::-1]
|
|
|
|
# Check DNA seq is valid
|
|
def check_dna_seq(dna_seq):
|
|
return all(letter in dna_alphabet for letter in dna_seq.upper())
|
|
|
|
# Clear the form and output
|
|
def clear(*args, **kwargs):
|
|
dna_seq_element.clear()
|
|
output.clear()
|
|
|
|
# Run
|
|
def run(*args, **kwargs):
|
|
dna_seq = dna_seq_element.value
|
|
is_dna_seq_valid = check_dna_seq(dna_seq)
|
|
if is_dna_seq_valid:
|
|
operation_name = operation_element.value
|
|
operation_name_output_element.write(operation_name)
|
|
|
|
# Compute the desired outputs
|
|
if operation_name == "Reverse":
|
|
output_dna_seq = return_reverse(dna_seq)
|
|
elif operation_name == "Complement":
|
|
output_dna_seq = return_complement(dna_seq)
|
|
elif operation_name == "ReverseComplement":
|
|
output_dna_seq = return_reverse_complement(dna_seq)
|
|
|
|
# Output the result
|
|
output.write(output_dna_seq)
|
|
elif (dna_seq.strip() == "") or (dna_seq is None):
|
|
output.write("No DNA sequence provided")
|
|
else:
|
|
output.write("Invalid DNA sequence entered")
|
|
</py-script>
|
|
|
|
</body>
|
|
</html>
|