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Author SHA1 Message Date
Shané Winner
5ec6d8861b Delete auto-ml-dataprep-remote-execution.yml 2019-08-27 11:19:38 -07:00
Shané Winner
ae188f324e Delete auto-ml-dataprep-remote-execution.ipynb 2019-08-27 11:19:27 -07:00
Shané Winner
4c30c2bdb9 Delete auto-ml-dataprep.yml 2019-08-27 11:19:00 -07:00
Shané Winner
b891440e2d Delete auto-ml-dataprep.ipynb 2019-08-27 11:18:50 -07:00
Shané Winner
784827cdd2 Update README.md 2019-08-27 09:23:40 -07:00
vizhur
0957af04ca Merge pull request #545 from Azure/imatiach-msft-patch-1
add dataprep dependency to notebook
2019-08-23 13:14:30 -04:00
Ilya Matiach
a3bdd193d1 add dataprep dependency to notebook
add dataprep dependency to train-explain-model-on-amlcompute-and-deploy.ipynb notebook for azureml-explain-model package
2019-08-23 13:11:36 -04:00
Shané Winner
dff09970ac Update README.md 2019-08-23 08:38:01 -07:00
Shané Winner
abc7d21711 Update README.md 2019-08-23 05:28:45 +00:00
Shané Winner
ec12ef635f Delete azure-ml-datadrift.ipynb 2019-08-21 10:32:40 -07:00
Shané Winner
81b3e6f09f Delete azure-ml-datadrift.yml 2019-08-21 10:32:32 -07:00
Shané Winner
cc167dceda Delete score.py 2019-08-21 10:32:23 -07:00
Shané Winner
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Shané Winner
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Shané Winner
fd4de05ddd Delete train.py 2019-08-21 10:31:26 -07:00
Shané Winner
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Shané Winner
12147754b2 Delete datasets-diff.ipynb 2019-08-21 10:31:05 -07:00
Shané Winner
90ef263823 Delete README.md 2019-08-21 10:30:54 -07:00
Shané Winner
143590cfb4 Delete new-york-taxi_scale-out.ipynb 2019-08-21 10:30:39 -07:00
Shané Winner
40379014ad Delete new-york-taxi.ipynb 2019-08-21 10:30:29 -07:00
Shané Winner
f7b0e99fa1 Delete part-00000-34f8a7a7-c3cd-4926-92b2-ba2dcd3f95b7.gz.parquet 2019-08-21 10:30:18 -07:00
Shané Winner
7a7ac48411 Delete part-00000-34f8a7a7-c3cd-4926-92b2-ba2dcd3f95b7.gz.parquet 2019-08-21 10:30:04 -07:00
Shané Winner
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Shané Winner
e41d7e6819 Delete part-00006-0b08e77b-f17a-4c20-972c-aa382e830fca-c000.csv 2019-08-21 10:29:36 -07:00
Shané Winner
691e038e84 Delete part-00005-0b08e77b-f17a-4c20-972c-aa382e830fca-c000.csv 2019-08-21 10:29:18 -07:00
Shané Winner
426e79d635 Delete part-00004-0b08e77b-f17a-4c20-972c-aa382e830fca-c000.csv 2019-08-21 10:29:02 -07:00
Shané Winner
326677e87f Delete part-00003-0b08e77b-f17a-4c20-972c-aa382e830fca-c000.csv 2019-08-21 10:28:45 -07:00
Shané Winner
44988e30ae Delete part-00002-0b08e77b-f17a-4c20-972c-aa382e830fca-c000.csv 2019-08-21 10:28:31 -07:00
Shané Winner
646ae37384 Delete part-00001-0b08e77b-f17a-4c20-972c-aa382e830fca-c000.csv 2019-08-21 10:28:18 -07:00
Shané Winner
457e29a663 Delete part-00000-0b08e77b-f17a-4c20-972c-aa382e830fca-c000.csv 2019-08-21 10:28:03 -07:00
Shané Winner
2771edfb2c Delete _SUCCESS 2019-08-21 10:27:45 -07:00
Shané Winner
f0001ec322 Delete adls-dpreptestfiles.crt 2019-08-21 10:27:31 -07:00
Shané Winner
d3e02a017d Delete chicago-aldermen-2015.csv 2019-08-21 10:27:05 -07:00
Shané Winner
a0ebed6876 Delete crime-dirty.csv 2019-08-21 10:26:55 -07:00
Shané Winner
dc0ab6db47 Delete crime-spring.csv 2019-08-21 10:26:45 -07:00
Shané Winner
ea7900f82c Delete crime-winter.csv 2019-08-21 10:26:35 -07:00
Shané Winner
0cb3fd180d Delete crime.parquet 2019-08-21 10:26:26 -07:00
Shané Winner
b05c3e46bb Delete crime.txt 2019-08-21 10:26:17 -07:00
Shané Winner
a1b7d298d3 Delete crime.xlsx 2019-08-21 10:25:41 -07:00
Shané Winner
cc5516c3b3 Delete crime_duplicate_headers.csv 2019-08-21 10:25:32 -07:00
Shané Winner
4fb6070b89 Delete crime.zip 2019-08-21 10:25:23 -07:00
Shané Winner
1b926cdf53 Delete crime-full.csv 2019-08-21 10:25:13 -07:00
Shané Winner
72fc00fb65 Delete crime.dprep 2019-08-21 10:24:56 -07:00
Shané Winner
ddc6b57253 Delete ADLSgen2-datapreptest.crt 2019-08-21 10:24:47 -07:00
Shané Winner
e8b3b98338 Delete crime_fixed_width_file.txt 2019-08-21 10:24:38 -07:00
Shané Winner
66325a1405 Delete crime_multiple_separators.csv 2019-08-21 10:24:29 -07:00
Shané Winner
0efbeaf4b8 Delete json.json 2019-08-21 10:24:12 -07:00
Shané Winner
11d487fb28 Merge pull request #542 from Azure/sgilley/update-deploy
change deployment to model-centric approach
2019-08-21 10:22:13 -07:00
Shané Winner
073e319ef9 Delete large_dflow.json 2019-08-21 10:21:41 -07:00
Shané Winner
3ed75f28d1 Delete map_func.py 2019-08-21 10:21:23 -07:00
Shané Winner
bfc0367f54 Delete median_income.csv 2019-08-21 10:21:14 -07:00
Shané Winner
075eeb583f Delete median_income_transformed.csv 2019-08-21 10:21:05 -07:00
Shané Winner
b7531d3b9e Delete parquet.parquet 2019-08-21 10:20:55 -07:00
Shané Winner
41dc3bd1cf Delete secrets.dprep 2019-08-21 10:20:45 -07:00
Shané Winner
b790b385a4 Delete stream-path.csv 2019-08-21 10:20:36 -07:00
Shané Winner
8700328fe9 Delete summarize.ipynb 2019-08-21 10:17:21 -07:00
Shané Winner
adbd2c8200 Delete subsetting-sampling.ipynb 2019-08-21 10:17:12 -07:00
Shané Winner
7d552effb0 Delete split-column-by-example.ipynb 2019-08-21 10:17:01 -07:00
Shané Winner
bc81d2a5a7 Delete semantic-types.ipynb 2019-08-21 10:16:52 -07:00
Shané Winner
7620de2d91 Delete secrets.ipynb 2019-08-21 10:16:42 -07:00
Shané Winner
07a43a0444 Delete replace-fill-error.ipynb 2019-08-21 10:16:33 -07:00
Shané Winner
f4d5874e09 Delete replace-datasource-replace-reference.ipynb 2019-08-21 10:16:23 -07:00
Shané Winner
8a0b4d24bd Delete random-split.ipynb 2019-08-21 10:16:14 -07:00
Shané Winner
636f19be1f Delete quantile-transformation.ipynb 2019-08-21 10:16:04 -07:00
Shané Winner
0fd7f7d9b2 Delete open-save-dataflows.ipynb 2019-08-21 10:15:54 -07:00
Shané Winner
ab6c66534f Delete one-hot-encoder.ipynb 2019-08-21 10:15:45 -07:00
Shané Winner
faccf13759 Delete min-max-scaler.ipynb 2019-08-21 10:15:36 -07:00
Shané Winner
4c6a28e4ed Delete label-encoder.ipynb 2019-08-21 10:15:25 -07:00
Shané Winner
64ad88e2cb Delete join.ipynb 2019-08-21 10:15:17 -07:00
Shané Winner
969ac90d39 Delete impute-missing-values.ipynb 2019-08-21 10:12:12 -07:00
Shané Winner
fb977c1e95 Delete fuzzy-group.ipynb 2019-08-21 10:12:03 -07:00
Shané Winner
d5ba3916f7 Delete filtering.ipynb 2019-08-21 10:11:53 -07:00
Shané Winner
f7f1087337 Delete external-references.ipynb 2019-08-21 10:11:43 -07:00
Shané Winner
47ea2dbc03 Delete derive-column-by-example.ipynb 2019-08-21 10:11:33 -07:00
Shané Winner
bd2cf534e5 Delete datastore.ipynb 2019-08-21 10:11:24 -07:00
Shané Winner
65f1668d69 Delete data-profile.ipynb 2019-08-21 10:11:16 -07:00
Shané Winner
e0fb7df0aa Delete data-ingestion.ipynb 2019-08-21 10:11:06 -07:00
Shané Winner
7047f76299 Delete custom-python-transforms.ipynb 2019-08-21 10:10:56 -07:00
Shané Winner
c39f2d5eb6 Delete column-type-transforms.ipynb 2019-08-21 10:10:45 -07:00
Shané Winner
5fda69a388 Delete column-manipulations.ipynb 2019-08-21 10:10:36 -07:00
Shané Winner
87ce954eef Delete cache.ipynb 2019-08-21 10:10:26 -07:00
Shané Winner
ebbeac413a Delete auto-read-file.ipynb 2019-08-21 10:10:15 -07:00
Shané Winner
a68bbaaab4 Delete assertions.ipynb 2019-08-21 10:10:05 -07:00
Shané Winner
8784dc979f Delete append-columns-and-rows.ipynb 2019-08-21 10:09:55 -07:00
Shané Winner
f8047544fc Delete add-column-using-expression.ipynb 2019-08-21 10:09:44 -07:00
Shané Winner
eeb2a05e4f Delete working-with-file-streams.ipynb 2019-08-21 10:09:33 -07:00
Shané Winner
6db9d7bd8b Delete writing-data.ipynb 2019-08-21 10:09:19 -07:00
Shané Winner
80e2fde734 Delete getting-started.ipynb 2019-08-21 10:09:04 -07:00
Shané Winner
ae4f5d40ee Delete README.md 2019-08-21 10:08:53 -07:00
Shané Winner
5516edadfd Delete README.md 2019-08-21 10:08:13 -07:00
Sheri Gilley
475afbf44b change deployment to model-centric approach 2019-08-21 09:50:49 -05:00
Shané Winner
197eaf1aab Merge pull request #541 from Azure/sdgilley/update-tutorial
Update img-classification-part1-training.ipynb
2019-08-20 15:59:24 -07:00
Sheri Gilley
184680f1d2 Update img-classification-part1-training.ipynb
updated explanation of datastore
2019-08-20 17:52:45 -05:00
Shané Winner
474f58bd0b Merge pull request #540 from trevorbye/master
removing tutorials for single combined tutorial
2019-08-20 15:22:47 -07:00
Trevor Bye
22c8433897 removing tutorials for single combined tutorial 2019-08-20 12:09:21 -07:00
Josée Martens
822cdd0f01 Update issue templates 2019-08-20 08:35:00 -05:00
Josée Martens
6e65d42986 Update issue templates 2019-08-20 08:26:45 -05:00
Harneet Virk
4c0cbac834 Merge pull request #537 from Azure/release_update/Release-141
update samples from Release-141 as a part of 1.0.57 SDK release
2019-08-19 18:32:44 -07:00
vizhur
44a7481ed1 update samples from Release-141 as a part of 1.0.57 SDK release 2019-08-19 23:33:44 +00:00
Ilya Matiach
8f418b216d Merge pull request #526 from imatiach-msft/ilmat/remove-old-explain-dirs
removing old explain model directories
2019-08-13 12:37:00 -04:00
Ilya Matiach
2d549ecad3 removing old directories 2019-08-13 12:31:51 -04:00
Josée Martens
4dbb024529 Update issue templates 2019-08-11 18:02:17 -05:00
Josée Martens
142a1a510e Update issue templates 2019-08-11 18:00:12 -05:00
vizhur
2522486c26 Merge pull request #519 from wamartin-aml/master
Add dataprep dependency
2019-08-08 09:34:36 -04:00
Walter Martin
6d5226e47c Add dataprep dependency 2019-08-08 09:31:18 -04:00
Shané Winner
e7676d7cdc Delete README.md 2019-08-07 13:14:39 -07:00
Shané Winner
a84f6636f1 Delete README.md 2019-08-07 13:14:24 -07:00
Roope Astala
41be10d1c1 Delete authentication-in-azure-ml.ipynb 2019-08-07 10:12:48 -04:00
vizhur
429eb43914 Merge pull request #513 from Azure/release_update/Release-139
update samples from Release-139 as a part of 1.0.55 SDK release
2019-08-05 16:22:25 -04:00
vizhur
c0dae0c645 update samples from Release-139 as a part of 1.0.55 SDK release 2019-08-05 18:39:19 +00:00
Shané Winner
e4d9a2b4c5 Delete score.py 2019-07-29 09:33:11 -07:00
Shané Winner
7648e8f516 Delete readme.md 2019-07-29 09:32:55 -07:00
Shané Winner
b5ed94b4eb Delete azure-ml-datadrift.ipynb 2019-07-29 09:32:47 -07:00
Shané Winner
85e487f74f Delete new-york-taxi_scale-out.ipynb 2019-07-28 00:38:05 -07:00
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d10474c249 Delete crime.zip 2019-07-28 00:35:51 -07:00
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6389cc16f9 Delete crime.xlsx 2019-07-28 00:35:41 -07:00
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Shané Winner
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Shané Winner
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Shané Winner
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Shané Winner
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Shané Winner
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Shané Winner
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Roope Astala
b0dc904189 Merge pull request #502 from msdavx/patch-1
Add demo notebook for datasets diff attribute.
2019-07-26 19:16:13 -04:00
msdavx
82bede239a Add demo notebook for datasets diff attribute. 2019-07-26 11:10:37 -07:00
vizhur
774517e173 Merge pull request #500 from Azure/release_update/Release-137
update samples from Release-137 as a part of 1.0.53 SDK release
2019-07-25 16:36:25 -04:00
Shané Winner
c3ce2bc7fe Delete README.md 2019-07-25 13:28:15 -07:00
Shané Winner
5dd09a1f7c Delete README.md 2019-07-25 13:28:01 -07:00
vizhur
ee1da0ee19 update samples from Release-137 as a part of 1.0.53 SDK release 2019-07-24 22:37:36 +00:00
Paula Ledgerwood
ddfce6b24c Merge pull request #498 from Azure/revert-461-master
Revert "Finetune SSD VGG"
2019-07-24 14:25:43 -07:00
Paula Ledgerwood
31dfc3dc55 Revert "Finetune SSD VGG" 2019-07-24 14:08:00 -07:00
Paula Ledgerwood
168c45b188 Merge pull request #461 from borisneal/master
Finetune SSD VGG
2019-07-24 14:07:15 -07:00
fierval
159948db67 moving notice.txt 2019-07-24 08:50:41 -07:00
fierval
d842731a3b remove tf prereq item 2019-07-23 14:58:51 -07:00
fierval
7822fd4c13 notice + attribution for anchors 2019-07-23 14:49:20 -07:00
fierval
d9fbe4cd87 new folder structure 2019-07-22 10:31:22 -07:00
Shané Winner
a64f4d331a Merge pull request #488 from trevorbye/master
adding new notebook
2019-07-18 10:40:36 -07:00
Trevor Bye
c41f449208 adding new notebook 2019-07-18 10:27:21 -07:00
vizhur
4fe8c1702d Merge pull request #486 from Azure/release_update/Release-22
Fix for automl remote env
2019-07-12 19:18:13 -04:00
vizhur
18cd152591 update samples - test 2019-07-12 22:51:17 +00:00
vizhur
4170a394ed Merge pull request #474 from Azure/release_update/Release-132
update samples from Release-132 as a part of 1.0.48 SDK release
2019-07-09 19:14:29 -04:00
vizhur
475ea36106 update samples from Release-132 as a part of 1.0.48 SDK release 2019-07-09 22:02:57 +00:00
fierval
b025816c92 remove config.json 2019-07-02 17:32:56 -07:00
fierval
c75e820107 ssd vgg 2019-07-02 17:23:56 -07:00
300 changed files with 19808 additions and 11297 deletions

30
.github/ISSUE_TEMPLATE/bug_report.md vendored Normal file
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@@ -0,0 +1,30 @@
---
name: Bug report
about: Create a report to help us improve
title: "[Notebook issue]"
labels: ''
assignees: ''
---
**Describe the bug**
A clear and concise description of what the bug is.
Provide the following if applicable:
+ Your Python & SDK version
+ Python Scripts or the full notebook name
+ Pipeline definition
+ Environment definition
+ Example data
+ Any log files.
+ Run and Workspace Id
**To Reproduce**
Steps to reproduce the behavior:
1.
**Expected behavior**
A clear and concise description of what you expected to happen.
**Additional context**
Add any other context about the problem here.

View File

@@ -0,0 +1,43 @@
---
name: Notebook issue
about: Describe your notebook issue
title: "[Notebook] DESCRIPTIVE TITLE"
labels: notebook
assignees: ''
---
### DESCRIPTION: Describe clearly + concisely
.
### REPRODUCIBLE: Steps
.
### EXPECTATION: Clear description
.
### CONFIG/ENVIRONMENT:
```Provide where applicable
## Your Python & SDK version:
## Environment definition:
## Notebook name or Python scripts:
## Run and Workspace Id:
## Pipeline definition:
## Example data:
## Any log files:
```

View File

@@ -1,8 +1,17 @@
---
page_type: sample
languages:
- python
products:
- azure
- azure-machine-learning-service
description: "With Azure Machine Learning service, learn to prep data, train, test, deploy, manage, and track machine learning models in a cloud-based environment."
---
# Azure Machine Learning service example notebooks # Azure Machine Learning service example notebooks
This repository contains example notebooks demonstrating the [Azure Machine Learning](https://azure.microsoft.com/en-us/services/machine-learning-service/) Python SDK which allows you to build, train, deploy and manage machine learning solutions using Azure. The AML SDK allows you the choice of using local or cloud compute resources, while managing and maintaining the complete data science workflow from the cloud. This repository contains example notebooks demonstrating the [Azure Machine Learning](https://azure.microsoft.com/en-us/services/machine-learning-service/) Python SDK which allows you to build, train, deploy and manage machine learning solutions using Azure. The AML SDK allows you the choice of using local or cloud compute resources, while managing and maintaining the complete data science workflow from the cloud.
![Azure ML workflow](https://raw.githubusercontent.com/MicrosoftDocs/azure-docs/master/articles/machine-learning/service/media/overview-what-is-azure-ml/aml.png)
## Quick installation ## Quick installation
```sh ```sh
@@ -38,6 +47,7 @@ The [How to use Azure ML](./how-to-use-azureml) folder contains specific example
- [Machine Learning Pipelines](./how-to-use-azureml/machine-learning-pipelines) - Examples showing how to create and use reusable pipelines for training and batch scoring - [Machine Learning Pipelines](./how-to-use-azureml/machine-learning-pipelines) - Examples showing how to create and use reusable pipelines for training and batch scoring
- [Deployment](./how-to-use-azureml/deployment) - Examples showing how to deploy and manage machine learning models and solutions - [Deployment](./how-to-use-azureml/deployment) - Examples showing how to deploy and manage machine learning models and solutions
- [Azure Databricks](./how-to-use-azureml/azure-databricks) - Examples showing how to use Azure ML with Azure Databricks - [Azure Databricks](./how-to-use-azureml/azure-databricks) - Examples showing how to use Azure ML with Azure Databricks
- [Monitor Models](./how-to-use-azureml/monitor-models) - Examples showing how to enable model monitoring services such as DataDrift
--- ---
## Documentation ## Documentation
@@ -52,6 +62,7 @@ The [How to use Azure ML](./how-to-use-azureml) folder contains specific example
Visit following repos to see projects contributed by Azure ML users: Visit following repos to see projects contributed by Azure ML users:
- [AMLSamples](https://github.com/Azure/AMLSamples) Number of end-to-end examples, including face recognition, predictive maintenance, customer churn and sentiment analysis.
- [Fine tune natural language processing models using Azure Machine Learning service](https://github.com/Microsoft/AzureML-BERT) - [Fine tune natural language processing models using Azure Machine Learning service](https://github.com/Microsoft/AzureML-BERT)
- [Fashion MNIST with Azure ML SDK](https://github.com/amynic/azureml-sdk-fashion) - [Fashion MNIST with Azure ML SDK](https://github.com/amynic/azureml-sdk-fashion)

View File

@@ -58,7 +58,7 @@
"\n", "\n",
"### What is an Azure Machine Learning workspace\n", "### What is an Azure Machine Learning workspace\n",
"\n", "\n",
"An Azure ML Workspace is an Azure resource that organizes and coordinates the actions of many other Azure resources to assist in executing and sharing machine learning workflows. In particular, an Azure ML Workspace coordinates storage, databases, and compute resources providing added functionality for machine learning experimentation, deployment, inferencing, and the monitoring of deployed models." "An Azure ML Workspace is an Azure resource that organizes and coordinates the actions of many other Azure resources to assist in executing and sharing machine learning workflows. In particular, an Azure ML Workspace coordinates storage, databases, and compute resources providing added functionality for machine learning experimentation, deployment, inference, and the monitoring of deployed models."
] ]
}, },
{ {
@@ -103,7 +103,7 @@
"source": [ "source": [
"import azureml.core\n", "import azureml.core\n",
"\n", "\n",
"print(\"This notebook was created using version 1.0.45 of the Azure ML SDK\")\n", "print(\"This notebook was created using version 1.0.57 of the Azure ML SDK\")\n",
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")" "print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
] ]
}, },
@@ -258,7 +258,7 @@
"```shell\n", "```shell\n",
"az vm list-skus -o tsv\n", "az vm list-skus -o tsv\n",
"```\n", "```\n",
"* min_nodes - this sets the minimum size of the cluster. If you set the minimum to 0 the cluster will shut down all nodes while note in use. Setting this number to a value higher than 0 will allow for faster start-up times, but you will also be billed when the cluster is not in use.\n", "* min_nodes - this sets the minimum size of the cluster. If you set the minimum to 0 the cluster will shut down all nodes while not in use. Setting this number to a value higher than 0 will allow for faster start-up times, but you will also be billed when the cluster is not in use.\n",
"* max_nodes - this sets the maximum size of the cluster. Setting this to a larger number allows for more concurrency and a greater distributed processing of scale-out jobs.\n", "* max_nodes - this sets the maximum size of the cluster. Setting this to a larger number allows for more concurrency and a greater distributed processing of scale-out jobs.\n",
"\n", "\n",
"\n", "\n",

4
configuration.yml Normal file
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@@ -0,0 +1,4 @@
name: configuration
dependencies:
- pip:
- azureml-sdk

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@@ -8,7 +8,7 @@ As a pre-requisite, run the [configuration Notebook](../configuration.ipynb) not
* [train-on-local](./training/train-on-local): Learn how to submit a run to local computer and use Azure ML managed run configuration. * [train-on-local](./training/train-on-local): Learn how to submit a run to local computer and use Azure ML managed run configuration.
* [train-on-amlcompute](./training/train-on-amlcompute): Use a 1-n node Azure ML managed compute cluster for remote runs on Azure CPU or GPU infrastructure. * [train-on-amlcompute](./training/train-on-amlcompute): Use a 1-n node Azure ML managed compute cluster for remote runs on Azure CPU or GPU infrastructure.
* [train-on-remote-vm](./training/train-on-remote-vm): Use Data Science Virtual Machine as a target for remote runs. * [train-on-remote-vm](./training/train-on-remote-vm): Use Data Science Virtual Machine as a target for remote runs.
* [logging-api](./training/logging-api): Learn about the details of logging metrics to run history. * [logging-api](./track-and-monitor-experiments/logging-api): Learn about the details of logging metrics to run history.
* [register-model-create-image-deploy-service](./deployment/register-model-create-image-deploy-service): Learn about the details of model management. * [register-model-create-image-deploy-service](./deployment/register-model-create-image-deploy-service): Learn about the details of model management.
* [production-deploy-to-aks](./deployment/production-deploy-to-aks) Deploy a model to production at scale on Azure Kubernetes Service. * [production-deploy-to-aks](./deployment/production-deploy-to-aks) Deploy a model to production at scale on Azure Kubernetes Service.
* [enable-data-collection-for-models-in-aks](./deployment/enable-data-collection-for-models-in-aks) Learn about data collection APIs for deployed model. * [enable-data-collection-for-models-in-aks](./deployment/enable-data-collection-for-models-in-aks) Learn about data collection APIs for deployed model.

View File

@@ -155,11 +155,11 @@ jupyter notebook
- [auto-ml-subsampling-local.ipynb](subsampling/auto-ml-subsampling-local.ipynb) - [auto-ml-subsampling-local.ipynb](subsampling/auto-ml-subsampling-local.ipynb)
- How to enable subsampling - How to enable subsampling
- [auto-ml-dataprep.ipynb](dataprep/auto-ml-dataprep.ipynb) - [auto-ml-dataset.ipynb](dataprep/auto-ml-dataset.ipynb)
- Using DataPrep for reading data - Using Dataset for reading data
- [auto-ml-dataprep-remote-execution.ipynb](dataprep-remote-execution/auto-ml-dataprep-remote-execution.ipynb) - [auto-ml-dataset-remote-execution.ipynb](dataprep-remote-execution/auto-ml-dataset-remote-execution.ipynb)
- Using DataPrep for reading data with remote execution - Using Dataset for reading data with remote execution
- [auto-ml-classification-with-whitelisting.ipynb](classification-with-whitelisting/auto-ml-classification-with-whitelisting.ipynb) - [auto-ml-classification-with-whitelisting.ipynb](classification-with-whitelisting/auto-ml-classification-with-whitelisting.ipynb)
- Dataset: scikit learn's [digit dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_digits.html#sklearn.datasets.load_digits) - Dataset: scikit learn's [digit dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_digits.html#sklearn.datasets.load_digits)
@@ -175,10 +175,19 @@ jupyter notebook
- Example of training an automated ML forecasting model on multiple time-series - Example of training an automated ML forecasting model on multiple time-series
- [auto-ml-classification-with-onnx.ipynb](classification-with-onnx/auto-ml-classification-with-onnx.ipynb) - [auto-ml-classification-with-onnx.ipynb](classification-with-onnx/auto-ml-classification-with-onnx.ipynb)
- Dataset: scikit learn's [digit dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_digits.html#sklearn.datasets.load_digits) - Dataset: scikit learn's [iris dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_iris.html)
- Simple example of using automated ML for classification with ONNX models - Simple example of using automated ML for classification with ONNX models
- Uses local compute for training - Uses local compute for training
- [auto-ml-remote-amlcompute-with-onnx.ipynb](remote-amlcompute-with-onnx/auto-ml-remote-amlcompute-with-onnx.ipynb)
- Dataset: scikit learn's [iris dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_iris.html)
- Example of using automated ML for classification using remote AmlCompute for training
- Train the models with ONNX compatible config on
- Parallel execution of iterations
- Async tracking of progress
- Cancelling individual iterations or entire run
- Retrieving the ONNX models and do the inference with them
- [auto-ml-bank-marketing-subscribers-with-deployment.ipynb](bank-marketing-subscribers-with-deployment/auto-ml-bank-marketing-with-deployment.ipynb) - [auto-ml-bank-marketing-subscribers-with-deployment.ipynb](bank-marketing-subscribers-with-deployment/auto-ml-bank-marketing-with-deployment.ipynb)
- Dataset: UCI's [bank marketing dataset](https://www.kaggle.com/janiobachmann/bank-marketing-dataset) - Dataset: UCI's [bank marketing dataset](https://www.kaggle.com/janiobachmann/bank-marketing-dataset)
- Simple example of using automated ML for classification to predict term deposit subscriptions for a bank - Simple example of using automated ML for classification to predict term deposit subscriptions for a bank

View File

@@ -2,6 +2,7 @@ name: azure_automl
dependencies: dependencies:
# The python interpreter version. # The python interpreter version.
# Currently Azure ML only supports 3.5.2 and later. # Currently Azure ML only supports 3.5.2 and later.
- pip
- python>=3.5.2,<3.6.8 - python>=3.5.2,<3.6.8
- nb_conda - nb_conda
- matplotlib==2.1.0 - matplotlib==2.1.0
@@ -12,10 +13,13 @@ dependencies:
- scikit-learn>=0.19.0,<=0.20.3 - scikit-learn>=0.19.0,<=0.20.3
- pandas>=0.22.0,<=0.23.4 - pandas>=0.22.0,<=0.23.4
- py-xgboost<=0.80 - py-xgboost<=0.80
- pyarrow>=0.11.0
- pip: - pip:
# Required packages for AzureML execution, history, and data preparation. # Required packages for AzureML execution, history, and data preparation.
- azureml-sdk[automl,explain] - azureml-defaults
- azureml-train-automl
- azureml-widgets - azureml-widgets
- azureml-explain-model
- pandas_ml - pandas_ml

View File

@@ -2,6 +2,7 @@ name: azure_automl
dependencies: dependencies:
# The python interpreter version. # The python interpreter version.
# Currently Azure ML only supports 3.5.2 and later. # Currently Azure ML only supports 3.5.2 and later.
- pip
- nomkl - nomkl
- python>=3.5.2,<3.6.8 - python>=3.5.2,<3.6.8
- nb_conda - nb_conda
@@ -13,10 +14,13 @@ dependencies:
- scikit-learn>=0.19.0,<=0.20.3 - scikit-learn>=0.19.0,<=0.20.3
- pandas>=0.22.0,<0.23.0 - pandas>=0.22.0,<0.23.0
- py-xgboost<=0.80 - py-xgboost<=0.80
- pyarrow>=0.11.0
- pip: - pip:
# Required packages for AzureML execution, history, and data preparation. # Required packages for AzureML execution, history, and data preparation.
- azureml-sdk[automl,explain] - azureml-defaults
- azureml-train-automl
- azureml-widgets - azureml-widgets
- azureml-explain-model
- pandas_ml - pandas_ml

View File

@@ -0,0 +1,10 @@
name: auto-ml-classification-bank-marketing
dependencies:
- pip:
- azureml-sdk
- azureml-defaults
- azureml-explain-model
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -0,0 +1,10 @@
name: auto-ml-classification-credit-card-fraud
dependencies:
- pip:
- azureml-sdk
- azureml-defaults
- azureml-explain-model
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -297,7 +297,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"for p in ['azureml-train-automl', 'azureml-sdk', 'azureml-core']:\n", "for p in ['azureml-train-automl', 'azureml-core']:\n",
" print('{}\\t{}'.format(p, dependencies[p]))" " print('{}\\t{}'.format(p, dependencies[p]))"
] ]
}, },
@@ -310,7 +310,7 @@
"from azureml.core.conda_dependencies import CondaDependencies\n", "from azureml.core.conda_dependencies import CondaDependencies\n",
"\n", "\n",
"myenv = CondaDependencies.create(conda_packages=['numpy','scikit-learn','py-xgboost<=0.80'],\n", "myenv = CondaDependencies.create(conda_packages=['numpy','scikit-learn','py-xgboost<=0.80'],\n",
" pip_packages=['azureml-sdk[automl]'])\n", " pip_packages=['azureml-train-automl'])\n",
"\n", "\n",
"conda_env_file_name = 'myenv.yml'\n", "conda_env_file_name = 'myenv.yml'\n",
"myenv.save_to_file('.', conda_env_file_name)" "myenv.save_to_file('.', conda_env_file_name)"
@@ -330,7 +330,7 @@
" content = cefr.read()\n", " content = cefr.read()\n",
"\n", "\n",
"with open(conda_env_file_name, 'w') as cefw:\n", "with open(conda_env_file_name, 'w') as cefw:\n",
" cefw.write(content.replace(azureml.core.VERSION, dependencies['azureml-sdk']))\n", " cefw.write(content.replace(azureml.core.VERSION, dependencies['azureml-train-automl']))\n",
"\n", "\n",
"# Substitute the actual model id in the script file.\n", "# Substitute the actual model id in the script file.\n",
"\n", "\n",

View File

@@ -0,0 +1,8 @@
name: auto-ml-classification-with-deployment
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -29,7 +29,6 @@
"1. [Data](#Data)\n", "1. [Data](#Data)\n",
"1. [Train](#Train)\n", "1. [Train](#Train)\n",
"1. [Results](#Results)\n", "1. [Results](#Results)\n",
"1. [Test](#Test)\n",
"\n" "\n"
] ]
}, },
@@ -39,7 +38,7 @@
"source": [ "source": [
"## Introduction\n", "## Introduction\n",
"\n", "\n",
"In this example we use the scikit-learn's [digit dataset](http://scikit-learn.org/stable/datasets/index.html#optical-recognition-of-handwritten-digits-dataset) to showcase how you can use AutoML for a simple classification problem.\n", "In this example we use the scikit-learn's [iris dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_iris.html) to showcase how you can use AutoML for a simple classification problem.\n",
"\n", "\n",
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n", "Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
"\n", "\n",
@@ -49,7 +48,8 @@
"1. Create an `Experiment` in an existing `Workspace`.\n", "1. Create an `Experiment` in an existing `Workspace`.\n",
"2. Configure AutoML using `AutoMLConfig`.\n", "2. Configure AutoML using `AutoMLConfig`.\n",
"3. Train the model using local compute with ONNX compatible config on.\n", "3. Train the model using local compute with ONNX compatible config on.\n",
"4. Explore the results and save the ONNX model." "4. Explore the results and save the ONNX model.\n",
"5. Inference with the ONNX model."
] ]
}, },
{ {
@@ -156,11 +156,11 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Train with enable ONNX compatible models config on\n", "## Train\n",
"\n", "\n",
"Instantiate an `AutoMLConfig` object to specify the settings and data used to run the experiment.\n", "Instantiate an `AutoMLConfig` object to specify the settings and data used to run the experiment.\n",
"\n", "\n",
"Set the parameter enable_onnx_compatible_models=True, if you also want to generate the ONNX compatible models. Please note, the forecasting task and TensorFlow models are not ONNX compatible yet.\n", "**Note:** Set the parameter enable_onnx_compatible_models=True, if you also want to generate the ONNX compatible models. Please note, the forecasting task and TensorFlow models are not ONNX compatible yet.\n",
"\n", "\n",
"|Property|Description|\n", "|Property|Description|\n",
"|-|-|\n", "|-|-|\n",

View File

@@ -0,0 +1,9 @@
name: auto-ml-classification-with-onnx
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml
- onnxruntime

View File

@@ -41,7 +41,7 @@
"In this example we use the scikit-learn's [digit dataset](http://scikit-learn.org/stable/datasets/index.html#optical-recognition-of-handwritten-digits-dataset) to showcase how you can use AutoML for a simple classification problem.\n", "In this example we use the scikit-learn's [digit dataset](http://scikit-learn.org/stable/datasets/index.html#optical-recognition-of-handwritten-digits-dataset) to showcase how you can use AutoML for a simple classification problem.\n",
"\n", "\n",
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n", "Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
"This notebooks shows how can automl can be trained on a a selected list of models,see the readme.md for the models.\n", "This notebooks shows how can automl can be trained on a selected list of models, see the readme.md for the models.\n",
"This trains the model exclusively on tensorflow based models.\n", "This trains the model exclusively on tensorflow based models.\n",
"\n", "\n",
"In this notebook you will learn how to:\n", "In this notebook you will learn how to:\n",

View File

@@ -0,0 +1,8 @@
name: auto-ml-classification-with-whitelisting
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -258,7 +258,11 @@
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
"metadata": {}, "metadata": {
"tags": [
"widget-rundetails-sample"
]
},
"outputs": [], "outputs": [],
"source": [ "source": [
"from azureml.widgets import RunDetails\n", "from azureml.widgets import RunDetails\n",

View File

@@ -0,0 +1,8 @@
name: auto-ml-classification
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -21,7 +21,7 @@
"metadata": {}, "metadata": {},
"source": [ "source": [
"# Automated Machine Learning\n", "# Automated Machine Learning\n",
"_**Prepare Data using `azureml.dataprep` for Remote Execution (AmlCompute)**_\n", "_**Load Data using `TabularDataset` for Remote Execution (AmlCompute)**_\n",
"\n", "\n",
"## Contents\n", "## Contents\n",
"1. [Introduction](#Introduction)\n", "1. [Introduction](#Introduction)\n",
@@ -37,23 +37,20 @@
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Introduction\n", "## Introduction\n",
"In this example we showcase how you can use the `azureml.dataprep` SDK to load and prepare data for AutoML. `azureml.dataprep` can also be used standalone; full documentation can be found [here](https://github.com/Microsoft/PendletonDocs).\n", "In this example we showcase how you can use AzureML Dataset to load data for AutoML.\n",
"\n", "\n",
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n", "Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
"\n", "\n",
"In this notebook you will learn how to:\n", "In this notebook you will learn how to:\n",
"1. Define data loading and preparation steps in a `Dataflow` using `azureml.dataprep`.\n", "1. Create a `TabularDataset` pointing to the training data.\n",
"2. Pass the `Dataflow` to AutoML for a local run.\n", "2. Pass the `TabularDataset` to AutoML for a remote run."
"3. Pass the `Dataflow` to AutoML for a remote run."
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Setup\n", "## Setup"
"\n",
"Currently, Data Prep only supports __Ubuntu 16__ and __Red Hat Enterprise Linux 7__. We are working on supporting more linux distros."
] ]
}, },
{ {
@@ -70,15 +67,13 @@
"outputs": [], "outputs": [],
"source": [ "source": [
"import logging\n", "import logging\n",
"import time\n",
"\n", "\n",
"import pandas as pd\n", "import pandas as pd\n",
"\n", "\n",
"import azureml.core\n", "import azureml.core\n",
"from azureml.core.compute import DsvmCompute\n",
"from azureml.core.experiment import Experiment\n", "from azureml.core.experiment import Experiment\n",
"from azureml.core.workspace import Workspace\n", "from azureml.core.workspace import Workspace\n",
"import azureml.dataprep as dprep\n", "from azureml.core.dataset import Dataset\n",
"from azureml.train.automl import AutoMLConfig" "from azureml.train.automl import AutoMLConfig"
] ]
}, },
@@ -89,11 +84,11 @@
"outputs": [], "outputs": [],
"source": [ "source": [
"ws = Workspace.from_config()\n", "ws = Workspace.from_config()\n",
" \n", "\n",
"# choose a name for experiment\n", "# choose a name for experiment\n",
"experiment_name = 'automl-dataprep-remote-dsvm'\n", "experiment_name = 'automl-dataset-remote-bai'\n",
"# project folder\n", "# project folder\n",
"project_folder = './sample_projects/automl-dataprep-remote-dsvm'\n", "project_folder = './sample_projects/automl-dataprep-remote-bai'\n",
" \n", " \n",
"experiment = Experiment(ws, experiment_name)\n", "experiment = Experiment(ws, experiment_name)\n",
" \n", " \n",
@@ -123,35 +118,21 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"# You can use `auto_read_file` which intelligently figures out delimiters and datatypes of a file.\n",
"# The data referenced here was a 1MB simple random sample of the Chicago Crime data into a local temporary directory.\n", "# The data referenced here was a 1MB simple random sample of the Chicago Crime data into a local temporary directory.\n",
"# You can also use `read_csv` and `to_*` transformations to read (with overridable delimiter)\n",
"# and convert column types manually.\n",
"example_data = 'https://dprepdata.blob.core.windows.net/demo/crime0-random.csv'\n", "example_data = 'https://dprepdata.blob.core.windows.net/demo/crime0-random.csv'\n",
"dflow = dprep.auto_read_file(example_data).skip(1) # Remove the header row.\n", "dataset = Dataset.Tabular.from_delimited_files(example_data)\n",
"dflow.get_profile()" "dataset.take(5).to_pandas_dataframe()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# As `Primary Type` is our y data, we need to drop the values those are null in this column.\n",
"dflow = dflow.drop_nulls('Primary Type')\n",
"dflow.head(5)"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Review the Data Preparation Result\n", "### Review the data\n",
"\n", "\n",
"You can peek the result of a Dataflow at any range using `skip(i)` and `head(j)`. Doing so evaluates only `j` records for all the steps in the Dataflow, which makes it fast even against large datasets.\n", "You can peek the result of a `TabularDataset` at any range using `skip(i)` and `take(j).to_pandas_dataframe()`. Doing so evaluates only `j` records, which makes it fast even against large datasets.\n",
"\n", "\n",
"`Dataflow` objects are immutable and are composed of a list of data preparation steps. A `Dataflow` object can be branched at any point for further usage." "`TabularDataset` objects are immutable and are composed of a list of subsetting transformations (optional)."
] ]
}, },
{ {
@@ -160,8 +141,8 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"X = dflow.drop_columns(columns=['Primary Type', 'FBI Code'])\n", "X = dataset.drop_columns(columns=['Primary Type', 'FBI Code'])\n",
"y = dflow.keep_columns(columns=['Primary Type'], validate_column_exists=True)" "y = dataset.keep_columns(columns=['Primary Type'], validate=True)"
] ]
}, },
{ {
@@ -205,7 +186,7 @@
"from azureml.core.compute import ComputeTarget\n", "from azureml.core.compute import ComputeTarget\n",
"\n", "\n",
"# Choose a name for your cluster.\n", "# Choose a name for your cluster.\n",
"amlcompute_cluster_name = \"cpu-cluster\"\n", "amlcompute_cluster_name = \"automlc2\"\n",
"\n", "\n",
"found = False\n", "found = False\n",
"\n", "\n",
@@ -226,11 +207,12 @@
" # Create the cluster.\\n\",\n", " # Create the cluster.\\n\",\n",
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, provisioning_config)\n", " compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, provisioning_config)\n",
"\n", "\n",
" # Can poll for a minimum number of nodes and for a specific timeout.\n", "print('Checking cluster status...')\n",
" # If no min_node_count is provided, it will use the scale settings for the cluster.\n", "# Can poll for a minimum number of nodes and for a specific timeout.\n",
" compute_target.wait_for_completion(show_output = True, min_node_count = None, timeout_in_minutes = 20)\n", "# If no min_node_count is provided, it will use the scale settings for the cluster.\n",
"compute_target.wait_for_completion(show_output = True, min_node_count = None, timeout_in_minutes = 20)\n",
"\n", "\n",
" # For a more detailed view of current AmlCompute status, use get_status()." "# For a more detailed view of current AmlCompute status, use get_status()."
] ]
}, },
{ {
@@ -241,6 +223,7 @@
"source": [ "source": [
"from azureml.core.runconfig import RunConfiguration\n", "from azureml.core.runconfig import RunConfiguration\n",
"from azureml.core.conda_dependencies import CondaDependencies\n", "from azureml.core.conda_dependencies import CondaDependencies\n",
"import pkg_resources\n",
"\n", "\n",
"# create a new RunConfig object\n", "# create a new RunConfig object\n",
"conda_run_config = RunConfiguration(framework=\"python\")\n", "conda_run_config = RunConfiguration(framework=\"python\")\n",
@@ -248,9 +231,8 @@
"# Set compute target to AmlCompute\n", "# Set compute target to AmlCompute\n",
"conda_run_config.target = compute_target\n", "conda_run_config.target = compute_target\n",
"conda_run_config.environment.docker.enabled = True\n", "conda_run_config.environment.docker.enabled = True\n",
"conda_run_config.environment.docker.base_image = azureml.core.runconfig.DEFAULT_CPU_IMAGE\n",
"\n", "\n",
"cd = CondaDependencies.create(pip_packages=['azureml-sdk[automl]'], conda_packages=['numpy','py-xgboost<=0.80'])\n", "cd = CondaDependencies.create(conda_packages=['numpy','py-xgboost<=0.80'])\n",
"conda_run_config.environment.python.conda_dependencies = cd" "conda_run_config.environment.python.conda_dependencies = cd"
] ]
}, },
@@ -258,9 +240,9 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Pass Data with `Dataflow` Objects\n", "### Pass Data with `TabularDataset` Objects\n",
"\n", "\n",
"The `Dataflow` objects captured above can also be passed to the `submit` method for a remote run. AutoML will serialize the `Dataflow` object and send it to the remote compute target. The `Dataflow` will not be evaluated locally." "The `TabularDataset` objects captured above can also be passed to the `submit` method for a remote run. AutoML will serialize the `TabularDataset` object and send it to the remote compute target. The `TabularDataset` will not be evaluated locally."
] ]
}, },
{ {
@@ -463,8 +445,13 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"dflow_test = dprep.auto_read_file(path='https://dprepdata.blob.core.windows.net/demo/crime0-test.csv').skip(1)\n", "dataset_test = Dataset.Tabular.from_delimited_files(path='https://dprepdata.blob.core.windows.net/demo/crime0-test.csv')\n",
"dflow_test = dflow_test.drop_nulls('Primary Type')" "\n",
"df_test = dataset_test.to_pandas_dataframe()\n",
"df_test = df_test[pd.notnull(df_test['Primary Type'])]\n",
"\n",
"y_test = df_test[['Primary Type']]\n",
"X_test = df_test.drop(['Primary Type', 'FBI Code'], axis=1)"
] ]
}, },
{ {
@@ -483,10 +470,6 @@
"source": [ "source": [
"from pandas_ml import ConfusionMatrix\n", "from pandas_ml import ConfusionMatrix\n",
"\n", "\n",
"y_test = dflow_test.keep_columns(columns=['Primary Type']).to_pandas_dataframe()\n",
"X_test = dflow_test.drop_columns(columns=['Primary Type', 'FBI Code']).to_pandas_dataframe()\n",
"\n",
"\n",
"ypred = fitted_model.predict(X_test)\n", "ypred = fitted_model.predict(X_test)\n",
"\n", "\n",
"cm = ConfusionMatrix(y_test['Primary Type'], ypred)\n", "cm = ConfusionMatrix(y_test['Primary Type'], ypred)\n",

View File

@@ -0,0 +1,10 @@
name: auto-ml-dataset-remote-execution
dependencies:
- pip:
- azureml-sdk
- azureml-defaults
- azureml-explain-model
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -1,5 +1,12 @@
{ {
"cells": [ "cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/automated-machine-learning/dataprep/auto-ml-dataprep.png)"
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
@@ -9,19 +16,12 @@
"Licensed under the MIT License." "Licensed under the MIT License."
] ]
}, },
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/automated-machine-learning/dataprep/auto-ml-dataprep.png)"
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"# Automated Machine Learning\n", "# Automated Machine Learning\n",
"_**Prepare Data using `azureml.dataprep` for Local Execution**_\n", "_**Load Data using `TabularDataset` for Local Execution**_\n",
"\n", "\n",
"## Contents\n", "## Contents\n",
"1. [Introduction](#Introduction)\n", "1. [Introduction](#Introduction)\n",
@@ -37,23 +37,20 @@
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Introduction\n", "## Introduction\n",
"In this example we showcase how you can use the `azureml.dataprep` SDK to load and prepare data for AutoML. `azureml.dataprep` can also be used standalone; full documentation can be found [here](https://github.com/Microsoft/PendletonDocs).\n", "In this example we showcase how you can use AzureML Dataset to load data for AutoML.\n",
"\n", "\n",
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n", "Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
"\n", "\n",
"In this notebook you will learn how to:\n", "In this notebook you will learn how to:\n",
"1. Define data loading and preparation steps in a `Dataflow` using `azureml.dataprep`.\n", "1. Create a `TabularDataset` pointing to the training data.\n",
"2. Pass the `Dataflow` to AutoML for a local run.\n", "2. Pass the `TabularDataset` to AutoML for a local run."
"3. Pass the `Dataflow` to AutoML for a remote run."
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Setup\n", "## Setup"
"\n",
"Currently, Data Prep only supports __Ubuntu 16__ and __Red Hat Enterprise Linux 7__. We are working on supporting more linux distros."
] ]
}, },
{ {
@@ -76,7 +73,7 @@
"import azureml.core\n", "import azureml.core\n",
"from azureml.core.experiment import Experiment\n", "from azureml.core.experiment import Experiment\n",
"from azureml.core.workspace import Workspace\n", "from azureml.core.workspace import Workspace\n",
"import azureml.dataprep as dprep\n", "from azureml.core.dataset import Dataset\n",
"from azureml.train.automl import AutoMLConfig" "from azureml.train.automl import AutoMLConfig"
] ]
}, },
@@ -89,9 +86,9 @@
"ws = Workspace.from_config()\n", "ws = Workspace.from_config()\n",
" \n", " \n",
"# choose a name for experiment\n", "# choose a name for experiment\n",
"experiment_name = 'automl-dataprep-local'\n", "experiment_name = 'automl-dataset-local'\n",
"# project folder\n", "# project folder\n",
"project_folder = './sample_projects/automl-dataprep-local'\n", "project_folder = './sample_projects/automl-dataset-local'\n",
" \n", " \n",
"experiment = Experiment(ws, experiment_name)\n", "experiment = Experiment(ws, experiment_name)\n",
" \n", " \n",
@@ -121,35 +118,21 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"# You can use `auto_read_file` which intelligently figures out delimiters and datatypes of a file.\n",
"# The data referenced here was a 1MB simple random sample of the Chicago Crime data into a local temporary directory.\n", "# The data referenced here was a 1MB simple random sample of the Chicago Crime data into a local temporary directory.\n",
"# You can also use `read_csv` and `to_*` transformations to read (with overridable delimiter)\n",
"# and convert column types manually.\n",
"example_data = 'https://dprepdata.blob.core.windows.net/demo/crime0-random.csv'\n", "example_data = 'https://dprepdata.blob.core.windows.net/demo/crime0-random.csv'\n",
"dflow = dprep.auto_read_file(example_data).skip(1) # Remove the header row.\n", "dataset = Dataset.Tabular.from_delimited_files(example_data)\n",
"dflow.get_profile()" "dataset.take(5).to_pandas_dataframe()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# As `Primary Type` is our y data, we need to drop the values those are null in this column.\n",
"dflow = dflow.drop_nulls('Primary Type')\n",
"dflow.head(5)"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Review the Data Preparation Result\n", "### Review the data\n",
"\n", "\n",
"You can peek the result of a Dataflow at any range using `skip(i)` and `head(j)`. Doing so evaluates only `j` records for all the steps in the Dataflow, which makes it fast even against large datasets.\n", "You can peek the result of a `TabularDataset` at any range using `skip(i)` and `take(j).to_pandas_dataframe()`. Doing so evaluates only `j` records, which makes it fast even against large datasets.\n",
"\n", "\n",
"`Dataflow` objects are immutable and are composed of a list of data preparation steps. A `Dataflow` object can be branched at any point for further usage." "`TabularDataset` objects are immutable and are composed of a list of subsetting transformations (optional)."
] ]
}, },
{ {
@@ -158,8 +141,8 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"X = dflow.drop_columns(columns=['Primary Type', 'FBI Code'])\n", "X = dataset.drop_columns(columns=['Primary Type', 'FBI Code'])\n",
"y = dflow.keep_columns(columns=['Primary Type'], validate_column_exists=True)" "y = dataset.keep_columns(columns=['Primary Type'], validate=True)"
] ]
}, },
{ {
@@ -190,9 +173,9 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Pass Data with `Dataflow` Objects\n", "### Pass Data with `TabularDataset` Objects\n",
"\n", "\n",
"The `Dataflow` objects captured above can be passed to the `submit` method for a local run. AutoML will retrieve the results from the `Dataflow` for model training." "The `TabularDataset` objects captured above can be passed to the `submit` method for a local run. AutoML will retrieve the results from the `TabularDataset` for model training."
] ]
}, },
{ {
@@ -355,8 +338,13 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"dflow_test = dprep.auto_read_file(path='https://dprepdata.blob.core.windows.net/demo/crime0-test.csv').skip(1)\n", "dataset_test = Dataset.Tabular.from_delimited_files(path='https://dprepdata.blob.core.windows.net/demo/crime0-test.csv')\n",
"dflow_test = dflow_test.drop_nulls('Primary Type')" "\n",
"df_test = dataset_test.to_pandas_dataframe()\n",
"df_test = df_test[pd.notnull(df_test['Primary Type'])]\n",
"\n",
"y_test = df_test[['Primary Type']]\n",
"X_test = df_test.drop(['Primary Type', 'FBI Code'], axis=1)"
] ]
}, },
{ {
@@ -375,9 +363,6 @@
"source": [ "source": [
"from pandas_ml import ConfusionMatrix\n", "from pandas_ml import ConfusionMatrix\n",
"\n", "\n",
"y_test = dflow_test.keep_columns(columns=['Primary Type']).to_pandas_dataframe()\n",
"X_test = dflow_test.drop_columns(columns=['Primary Type', 'FBI Code']).to_pandas_dataframe()\n",
"\n",
"ypred = fitted_model.predict(X_test)\n", "ypred = fitted_model.predict(X_test)\n",
"\n", "\n",
"cm = ConfusionMatrix(y_test['Primary Type'], ypred)\n", "cm = ConfusionMatrix(y_test['Primary Type'], ypred)\n",

View File

@@ -0,0 +1,8 @@
name: auto-ml-dataset
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -197,12 +197,12 @@
"display(HTML('<h3>Iterations</h3>'))\n", "display(HTML('<h3>Iterations</h3>'))\n",
"RunDetails(ml_run).show() \n", "RunDetails(ml_run).show() \n",
"\n", "\n",
"children = list(ml_run.get_children())\n", "all_metrics = ml_run.get_metrics(recursive=True)\n",
"metricslist = {}\n", "metricslist = {}\n",
"for run in children:\n", "for run_id, metrics in all_metrics.items():\n",
" properties = run.get_properties()\n", " iteration = int(run_id.split('_')[-1])\n",
" metrics = {k: v for k, v in run.get_metrics().items() if isinstance(v, float)}\n", " float_metrics = {k: v for k, v in metrics.items() if isinstance(v, float)}\n",
" metricslist[int(properties['iteration'])] = metrics\n", " metricslist[iteration] = float_metrics\n",
"\n", "\n",
"rundata = pd.DataFrame(metricslist).sort_index(1)\n", "rundata = pd.DataFrame(metricslist).sort_index(1)\n",
"display(HTML('<h3>Metrics</h3>'))\n", "display(HTML('<h3>Metrics</h3>'))\n",

View File

@@ -0,0 +1,8 @@
name: auto-ml-exploring-previous-runs
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -36,19 +36,17 @@
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Introduction\n", "## Introduction\n",
"In this example, we show how AutoML can be used for bike share forecasting.\n", "This notebook demonstrates demand forecasting for a bike-sharing service using AutoML.\n",
"\n", "\n",
"The purpose is to demonstrate how to take advantage of the built-in holiday featurization, access the feature names, and further demonstrate how to work with the `forecast` function. Please also look at the additional forecasting notebooks, which document lagging, rolling windows, forecast quantiles, other ways to use the forecast function, and forecaster deployment.\n", "AutoML highlights here include built-in holiday featurization, accessing engineered feature names, and working with the `forecast` function. Please also look at the additional forecasting notebooks, which document lagging, rolling windows, forecast quantiles, other ways to use the forecast function, and forecaster deployment.\n",
"\n", "\n",
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n", "Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
"\n", "\n",
"In this notebook you would see\n", "Notebook synopsis:\n",
"1. Creating an Experiment in an existing Workspace\n", "1. Creating an Experiment in an existing Workspace\n",
"2. Instantiating AutoMLConfig with new task type \"forecasting\" for timeseries data training, and other timeseries related settings: for this dataset we use the basic one: \"time_column_name\" \n", "2. Configuration and local run of AutoML for a time-series model with lag and holiday features \n",
"3. Training the Model using local compute\n", "3. Viewing the engineered names for featurized data and featurization summary for all raw features\n",
"4. Exploring the results\n", "4. Evaluating the fitted model using a rolling test "
"5. Viewing the engineered names for featurized data and featurization summary for all raw features\n",
"6. Testing the fitted model"
] ]
}, },
{ {
@@ -69,6 +67,9 @@
"import numpy as np\n", "import numpy as np\n",
"import logging\n", "import logging\n",
"import warnings\n", "import warnings\n",
"\n",
"from pandas.tseries.frequencies import to_offset\n",
"\n",
"# Squash warning messages for cleaner output in the notebook\n", "# Squash warning messages for cleaner output in the notebook\n",
"warnings.showwarning = lambda *args, **kwargs: None\n", "warnings.showwarning = lambda *args, **kwargs: None\n",
"\n", "\n",
@@ -83,7 +84,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"As part of the setup you have already created a <b>Workspace</b>. For AutoML you would need to create an <b>Experiment</b>. An <b>Experiment</b> is a named object in a <b>Workspace</b>, which is used to run experiments." "As part of the setup you have already created a <b>Workspace</b>. To run AutoML, you also need to create an <b>Experiment</b>. An Experiment corresponds to a prediction problem you are trying to solve, while a Run corresponds to a specific approach to the problem."
] ]
}, },
{ {
@@ -128,14 +129,15 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"data = pd.read_csv('bike-no.csv', parse_dates=['date'])" "data = pd.read_csv('bike-no.csv', parse_dates=['date'])\n",
"data.head()"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"Let's set up what we know abou the dataset. \n", "Let's set up what we know about the dataset. \n",
"\n", "\n",
"**Target column** is what we want to forecast.\n", "**Target column** is what we want to forecast.\n",
"\n", "\n",
@@ -193,8 +195,7 @@
"source": [ "source": [
"### Setting forecaster maximum horizon \n", "### Setting forecaster maximum horizon \n",
"\n", "\n",
"Assuming your test data forms a full and regular time series(regular time intervals and no holes), \n", "The forecast horizon is the number of periods into the future that the model should predict. Here, we set the horizon to 14 periods (i.e. 14 days). Notice that this is much shorter than the number of days in the test set; we will need to use a rolling test to evaluate the performance on the whole test set. For more discussion of forecast horizons and guiding principles for setting them, please see the [energy demand notebook](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/automated-machine-learning/forecasting-energy-demand). "
"the maximum horizon you will need to forecast is the length of the longest grain in your test set."
] ]
}, },
{ {
@@ -203,10 +204,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"if len(grain_column_names) == 0:\n", "max_horizon = 14"
" max_horizon = len(X_test)\n",
"else:\n",
" max_horizon = X_test.groupby(grain_column_names)[time_column_name].count().max()"
] ]
}, },
{ {
@@ -236,26 +234,25 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"time_column_name = 'date'\n",
"automl_settings = {\n", "automl_settings = {\n",
" \"time_column_name\": time_column_name,\n", " 'time_column_name': time_column_name,\n",
" # these columns are a breakdown of the total and therefore a leak\n", " 'max_horizon': max_horizon,\n",
" \"drop_column_names\": ['casual', 'registered'],\n",
" # knowing the country/region allows Automated ML to bring in holidays\n", " # knowing the country/region allows Automated ML to bring in holidays\n",
" \"country_or_region\" : 'US',\n", " 'country_or_region': 'US',\n",
" \"max_horizon\" : max_horizon,\n", " 'target_lags': 1,\n",
" \"target_lags\": 1 \n", " # these columns are a breakdown of the total and therefore a leak\n",
" 'drop_column_names': ['casual', 'registered']\n",
"}\n", "}\n",
"\n", "\n",
"automl_config = AutoMLConfig(task = 'forecasting', \n", "automl_config = AutoMLConfig(task='forecasting', \n",
" primary_metric='normalized_root_mean_squared_error',\n", " primary_metric='normalized_root_mean_squared_error',\n",
" iterations = 10,\n", " iterations=10,\n",
" iteration_timeout_minutes = 5,\n", " iteration_timeout_minutes=5,\n",
" X = X_train,\n", " X=X_train,\n",
" y = y_train,\n", " y=y_train,\n",
" n_cross_validations = 3, \n", " n_cross_validations=3, \n",
" path=project_folder,\n", " path=project_folder,\n",
" verbosity = logging.INFO,\n", " verbosity=logging.INFO,\n",
" **automl_settings)" " **automl_settings)"
] ]
}, },
@@ -263,7 +260,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"We will now run the experiment, starting with 10 iterations of model search. Experiment can be continued for more iterations if the results are not yet good. You will see the currently running iterations printing to the console." "We will now run the experiment, starting with 10 iterations of model search. The experiment can be continued for more iterations if more accurate results are required. You will see the currently running iterations printing to the console."
] ]
}, },
{ {
@@ -348,18 +345,26 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"fitted_model.named_steps['timeseriestransformer'].get_featurization_summary()" "# Get the featurization summary as a list of JSON\n",
"featurization_summary = fitted_model.named_steps['timeseriestransformer'].get_featurization_summary()\n",
"# View the featurization summary as a pandas dataframe\n",
"pd.DataFrame.from_records(featurization_summary)"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Test the Best Fitted Model\n", "## Evaluate"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We now use the best fitted model from the AutoML Run to make forecasts for the test set. \n",
"\n", "\n",
"Predict on training and test set, and calculate residual values.\n", "We always score on the original dataset whose schema matches the training set schema."
"\n",
"We always score on the original dataset whose schema matches the scheme of the training dataset."
] ]
}, },
{ {
@@ -371,21 +376,12 @@
"X_test.head()" "X_test.head()"
] ]
}, },
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"y_query = y_test.copy().astype(np.float)\n",
"y_query.fill(np.NaN)\n",
"y_fcst, X_trans = fitted_model.forecast(X_test, y_query)"
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"We now define some functions for aligning output to input and for producing rolling forecasts over the full test set. As previously stated, the forecast horizon of 14 days is shorter than the length of the test set - which is about 120 days. To get predictions over the full test set, we iterate over the test set, making forecasts 14 days at a time and combining the results. We also make sure that each 14-day forecast uses up-to-date actuals - the current context - to construct lag features. \n",
"\n",
"It is a good practice to always align the output explicitly to the input, as the count and order of the rows may have changed during transformations that span multiple rows." "It is a good practice to always align the output explicitly to the input, as the count and order of the rows may have changed during transformations that span multiple rows."
] ]
}, },
@@ -395,7 +391,8 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"def align_outputs(y_predicted, X_trans, X_test, y_test, predicted_column_name = 'predicted'):\n", "def align_outputs(y_predicted, X_trans, X_test, y_test, predicted_column_name='predicted',\n",
" horizon_colname='horizon_origin'):\n",
" \"\"\"\n", " \"\"\"\n",
" Demonstrates how to get the output aligned to the inputs\n", " Demonstrates how to get the output aligned to the inputs\n",
" using pandas indexes. Helps understand what happened if\n", " using pandas indexes. Helps understand what happened if\n",
@@ -407,7 +404,8 @@
" * model was asked to predict past max_horizon -> increase max horizon\n", " * model was asked to predict past max_horizon -> increase max horizon\n",
" * data at start of X_test was needed for lags -> provide previous periods\n", " * data at start of X_test was needed for lags -> provide previous periods\n",
" \"\"\"\n", " \"\"\"\n",
" df_fcst = pd.DataFrame({predicted_column_name : y_predicted})\n", " df_fcst = pd.DataFrame({predicted_column_name : y_predicted,\n",
" horizon_colname: X_trans[horizon_colname]})\n",
" # y and X outputs are aligned by forecast() function contract\n", " # y and X outputs are aligned by forecast() function contract\n",
" df_fcst.index = X_trans.index\n", " df_fcst.index = X_trans.index\n",
" \n", " \n",
@@ -426,7 +424,49 @@
" clean = together[together[[target_column_name, predicted_column_name]].notnull().all(axis=1)]\n", " clean = together[together[[target_column_name, predicted_column_name]].notnull().all(axis=1)]\n",
" return(clean)\n", " return(clean)\n",
"\n", "\n",
"df_all = align_outputs(y_fcst, X_trans, X_test, y_test)\n" "def do_rolling_forecast(fitted_model, X_test, y_test, max_horizon, freq='D'):\n",
" \"\"\"\n",
" Produce forecasts on a rolling origin over the given test set.\n",
" \n",
" Each iteration makes a forecast for the next 'max_horizon' periods \n",
" with respect to the current origin, then advances the origin by the horizon time duration. \n",
" The prediction context for each forecast is set so that the forecaster uses \n",
" the actual target values prior to the current origin time for constructing lag features.\n",
" \n",
" This function returns a concatenated DataFrame of rolling forecasts.\n",
" \"\"\"\n",
" df_list = []\n",
" origin_time = X_test[time_column_name].min()\n",
" while origin_time <= X_test[time_column_name].max():\n",
" # Set the horizon time - end date of the forecast\n",
" horizon_time = origin_time + max_horizon * to_offset(freq)\n",
" \n",
" # Extract test data from an expanding window up-to the horizon \n",
" expand_wind = (X_test[time_column_name] < horizon_time)\n",
" X_test_expand = X_test[expand_wind]\n",
" y_query_expand = np.zeros(len(X_test_expand)).astype(np.float)\n",
" y_query_expand.fill(np.NaN)\n",
" \n",
" if origin_time != X_test[time_column_name].min():\n",
" # Set the context by including actuals up-to the origin time\n",
" test_context_expand_wind = (X_test[time_column_name] < origin_time)\n",
" context_expand_wind = (X_test_expand[time_column_name] < origin_time)\n",
" y_query_expand[context_expand_wind] = y_test[test_context_expand_wind]\n",
" \n",
" # Make a forecast out to the maximum horizon\n",
" y_fcst, X_trans = fitted_model.forecast(X_test_expand, y_query_expand)\n",
" \n",
" # Align forecast with test set for dates within the current rolling window \n",
" trans_tindex = X_trans.index.get_level_values(time_column_name)\n",
" trans_roll_wind = (trans_tindex >= origin_time) & (trans_tindex < horizon_time)\n",
" test_roll_wind = expand_wind & (X_test[time_column_name] >= origin_time)\n",
" df_list.append(align_outputs(y_fcst[trans_roll_wind], X_trans[trans_roll_wind],\n",
" X_test[test_roll_wind], y_test[test_roll_wind]))\n",
" \n",
" # Advance the origin time\n",
" origin_time = horizon_time\n",
" \n",
" return pd.concat(df_list, ignore_index=True)"
] ]
}, },
{ {
@@ -435,6 +475,30 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"df_all = do_rolling_forecast(fitted_model, X_test, y_test, max_horizon)\n",
"df_all"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We now calculate some error metrics for the forecasts and vizualize the predictions vs. the actuals."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"def APE(actual, pred):\n",
" \"\"\"\n",
" Calculate absolute percentage error.\n",
" Returns a vector of APE values with same length as actual/pred.\n",
" \"\"\"\n",
" return 100*np.abs((actual - pred)/actual)\n",
"\n",
"def MAPE(actual, pred):\n", "def MAPE(actual, pred):\n",
" \"\"\"\n", " \"\"\"\n",
" Calculate mean absolute percentage error.\n", " Calculate mean absolute percentage error.\n",
@@ -444,8 +508,7 @@
" not_zero = ~np.isclose(actual, 0.0)\n", " not_zero = ~np.isclose(actual, 0.0)\n",
" actual_safe = actual[not_na & not_zero]\n", " actual_safe = actual[not_na & not_zero]\n",
" pred_safe = pred[not_na & not_zero]\n", " pred_safe = pred[not_na & not_zero]\n",
" APE = 100*np.abs((actual_safe - pred_safe)/actual_safe)\n", " return np.mean(APE(actual_safe, pred_safe))"
" return np.mean(APE)"
] ]
}, },
{ {
@@ -462,18 +525,63 @@
"print('MAPE: %.2f' % MAPE(df_all[target_column_name], df_all['predicted']))\n", "print('MAPE: %.2f' % MAPE(df_all[target_column_name], df_all['predicted']))\n",
"\n", "\n",
"# Plot outputs\n", "# Plot outputs\n",
"%matplotlib notebook\n", "%matplotlib inline\n",
"test_pred = plt.scatter(df_all[target_column_name], df_all['predicted'], color='b')\n", "test_pred = plt.scatter(df_all[target_column_name], df_all['predicted'], color='b')\n",
"test_test = plt.scatter(y_test, y_test, color='g')\n", "test_test = plt.scatter(y_test, y_test, color='g')\n",
"plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n", "plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
"plt.show()" "plt.show()"
] ]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"The MAPE seems high; it is being skewed by an actual with a small absolute value. For a more informative evaluation, we can calculate the metrics by forecast horizon:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"df_all.groupby('horizon_origin').apply(\n",
" lambda df: pd.Series({'MAPE': MAPE(df[target_column_name], df['predicted']),\n",
" 'RMSE': np.sqrt(mean_squared_error(df[target_column_name], df['predicted'])),\n",
" 'MAE': mean_absolute_error(df[target_column_name], df['predicted'])}))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"It's also interesting to see the distributions of APE (absolute percentage error) by horizon. On a log scale, the outlying APE in the horizon-3 group is clear."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"df_all_APE = df_all.assign(APE=APE(df_all[target_column_name], df_all['predicted']))\n",
"APEs = [df_all_APE[df_all['horizon_origin'] == h].APE.values for h in range(1, max_horizon + 1)]\n",
"\n",
"%matplotlib inline\n",
"plt.boxplot(APEs)\n",
"plt.yscale('log')\n",
"plt.xlabel('horizon')\n",
"plt.ylabel('APE (%)')\n",
"plt.title('Absolute Percentage Errors by Forecast Horizon')\n",
"\n",
"plt.show()"
]
} }
], ],
"metadata": { "metadata": {
"authors": [ "authors": [
{ {
"name": "xiaga@microsoft.com, tosingli@microsoft.com" "name": "erwright"
} }
], ],
"kernelspec": { "kernelspec": {
@@ -491,7 +599,7 @@
"name": "python", "name": "python",
"nbconvert_exporter": "python", "nbconvert_exporter": "python",
"pygments_lexer": "ipython3", "pygments_lexer": "ipython3",
"version": "3.6.7" "version": "3.6.8"
} }
}, },
"nbformat": 4, "nbformat": 4,

View File

@@ -0,0 +1,9 @@
name: auto-ml-forecasting-bike-share
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml
- statsmodels

View File

@@ -35,17 +35,16 @@
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Introduction\n", "## Introduction\n",
"In this example, we show how AutoML can be used for energy demand forecasting.\n", "In this example, we show how AutoML can be used to forecast a single time-series in the energy demand application area. \n",
"\n", "\n",
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n", "Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
"\n", "\n",
"In this notebook you would see\n", "Notebook synopsis:\n",
"1. Creating an Experiment in an existing Workspace\n", "1. Creating an Experiment in an existing Workspace\n",
"2. Instantiating AutoMLConfig with new task type \"forecasting\" for timeseries data training, and other timeseries related settings: for this dataset we use the basic one: \"time_column_name\" \n", "2. Configuration and local run of AutoML for a simple time-series model\n",
"3. Training the Model using local compute\n", "3. View engineered features and prediction results\n",
"4. Exploring the results\n", "4. Configuration and local run of AutoML for a time-series model with lag and rolling window features\n",
"5. Viewing the engineered names for featurized data and featurization summary for all raw features\n", "5. Estimate feature importance"
"6. Testing the fitted model"
] ]
}, },
{ {
@@ -65,6 +64,10 @@
"import pandas as pd\n", "import pandas as pd\n",
"import numpy as np\n", "import numpy as np\n",
"import logging\n", "import logging\n",
"import warnings\n",
"\n",
"# Squash warning messages for cleaner output in the notebook\n",
"warnings.showwarning = lambda *args, **kwargs: None\n",
"\n", "\n",
"from azureml.core.workspace import Workspace\n", "from azureml.core.workspace import Workspace\n",
"from azureml.core.experiment import Experiment\n", "from azureml.core.experiment import Experiment\n",
@@ -77,7 +80,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"As part of the setup you have already created a <b>Workspace</b>. For AutoML you would need to create an <b>Experiment</b>. An <b>Experiment</b> is a named object in a <b>Workspace</b>, which is used to run experiments." "As part of the setup you have already created a <b>Workspace</b>. To run AutoML, you also need to create an <b>Experiment</b>. An Experiment corresponds to a prediction problem you are trying to solve, while a Run corresponds to a specific approach to the problem."
] ]
}, },
{ {
@@ -113,7 +116,7 @@
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Data\n", "## Data\n",
"Read energy demanding data from file, and preview data." "We will use energy consumption data from New York City for model training. The data is stored in a tabular format and includes energy demand and basic weather data at an hourly frequency. Pandas CSV reader is used to read the file into memory. Special attention is given to the \"timeStamp\" column in the data since it contains text which should be parsed as datetime-type objects. "
] ]
}, },
{ {
@@ -126,13 +129,20 @@
"data.head()" "data.head()"
] ]
}, },
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We must now define the schema of this dataset. Every time-series must have a time column and a target. The target quantity is what will be eventually forecasted by a trained model. In this case, the target is the \"demand\" column. The other columns, \"temp\" and \"precip,\" are implicitly designated as features."
]
},
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"# let's take note of what columns means what in the data\n", "# Dataset schema\n",
"time_column_name = 'timeStamp'\n", "time_column_name = 'timeStamp'\n",
"target_column_name = 'demand'" "target_column_name = 'demand'"
] ]
@@ -141,7 +151,14 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Split the data into train and test sets\n" "### Forecast Horizon\n",
"\n",
"In addition to the data schema, we must also specify the forecast horizon. A forecast horizon is a time span into the future (or just beyond the latest date in the training data) where forecasts of the target quantity are needed. Choosing a forecast horizon is application specific, but a rule-of-thumb is that **the horizon should be the time-frame where you need actionable decisions based on the forecast.** The horizon usually has a strong relationship with the frequency of the time-series data, that is, the sampling interval of the target quantity and the features. For instance, the NYC energy demand data has an hourly frequency. A decision that requires a demand forecast to the hour is unlikely to be made weeks or months in advance, particularly if we expect weather to be a strong determinant of demand. We may have fairly accurate meteorological forecasts of the hourly temperature and precipitation on a the time-scale of a day or two, however.\n",
"\n",
"Given the above discussion, we generally recommend that users set forecast horizons to less than 100 time periods (i.e. less than 100 hours in the NYC energy example). Furthermore, **AutoML's memory use and computation time increase in proportion to the length of the horizon**, so the user should consider carefully how they set this value. If a long horizon forecast really is necessary, it may be good practice to aggregate the series to a coarser time scale. \n",
"\n",
"\n",
"Forecast horizons in AutoML are given as integer multiples of the time-series frequency. In this example, we set the horizon to 48 hours."
] ]
}, },
{ {
@@ -150,8 +167,32 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"X_train = data[data[time_column_name] < '2017-02-01']\n", "max_horizon = 48"
"X_test = data[data[time_column_name] >= '2017-02-01']\n", ]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Split the data into train and test sets\n",
"We now split the data into a train and a test set so that we may evaluate model performance. We note that the tail of the dataset contains a large number of NA values in the target column, so we designate the test set as the 48 hour window ending on the latest date of known energy demand. "
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Find time point to split on\n",
"latest_known_time = data[~pd.isnull(data[target_column_name])][time_column_name].max()\n",
"split_time = latest_known_time - pd.Timedelta(hours=max_horizon)\n",
"\n",
"# Split into train/test sets\n",
"X_train = data[data[time_column_name] <= split_time]\n",
"X_test = data[(data[time_column_name] > split_time) & (data[time_column_name] <= latest_known_time)]\n",
"\n",
"# Move the target values into their own arrays \n",
"y_train = X_train.pop(target_column_name).values\n", "y_train = X_train.pop(target_column_name).values\n",
"y_test = X_test.pop(target_column_name).values" "y_test = X_test.pop(target_column_name).values"
] ]
@@ -162,7 +203,7 @@
"source": [ "source": [
"## Train\n", "## Train\n",
"\n", "\n",
"Instantiate a AutoMLConfig object. This defines the settings and data used to run the experiment.\n", "We now instantiate an AutoMLConfig object. This config defines the settings and data used to run the experiment. For forecasting tasks, we must provide extra configuration related to the time-series data schema and forecasting context. Here, only the name of the time column and the maximum forecast horizon are needed. Other settings are described below:\n",
"\n", "\n",
"|Property|Description|\n", "|Property|Description|\n",
"|-|-|\n", "|-|-|\n",
@@ -172,7 +213,7 @@
"|**iteration_timeout_minutes**|Time limit in minutes for each iteration.|\n", "|**iteration_timeout_minutes**|Time limit in minutes for each iteration.|\n",
"|**X**|(sparse) array-like, shape = [n_samples, n_features]|\n", "|**X**|(sparse) array-like, shape = [n_samples, n_features]|\n",
"|**y**|(sparse) array-like, shape = [n_samples, ], targets values.|\n", "|**y**|(sparse) array-like, shape = [n_samples, ], targets values.|\n",
"|**n_cross_validations**|Number of cross validation splits.|\n", "|**n_cross_validations**|Number of cross validation splits. Rolling Origin Validation is used to split time-series in a temporally consistent way.|\n",
"|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder. " "|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder. "
] ]
}, },
@@ -182,22 +223,23 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"automl_settings = {\n", "time_series_settings = {\n",
" \"time_column_name\": time_column_name \n", " 'time_column_name': time_column_name,\n",
" 'max_horizon': max_horizon\n",
"}\n", "}\n",
"\n", "\n",
"\n", "automl_config = AutoMLConfig(task='forecasting',\n",
"automl_config = AutoMLConfig(task = 'forecasting',\n", " debug_log='automl_nyc_energy_errors.log',\n",
" debug_log = 'automl_nyc_energy_errors.log',\n",
" primary_metric='normalized_root_mean_squared_error',\n", " primary_metric='normalized_root_mean_squared_error',\n",
" iterations = 10,\n", " blacklist_models = ['ExtremeRandomTrees'],\n",
" iteration_timeout_minutes = 5,\n", " iterations=10,\n",
" X = X_train,\n", " iteration_timeout_minutes=5,\n",
" y = y_train,\n", " X=X_train,\n",
" n_cross_validations = 3,\n", " y=y_train,\n",
" n_cross_validations=3,\n",
" path=project_folder,\n", " path=project_folder,\n",
" verbosity = logging.INFO,\n", " verbosity = logging.INFO,\n",
" **automl_settings)" " **time_series_settings)"
] ]
}, },
{ {
@@ -354,7 +396,8 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Calculate accuracy metrics\n" "### Calculate accuracy metrics\n",
"Finally, we calculate some accuracy metrics for the forecast and plot the predictions vs. the actuals over the time range in the test set."
] ]
}, },
{ {
@@ -390,10 +433,13 @@
"print('MAPE: %.2f' % MAPE(df_all[target_column_name], df_all['predicted']))\n", "print('MAPE: %.2f' % MAPE(df_all[target_column_name], df_all['predicted']))\n",
"\n", "\n",
"# Plot outputs\n", "# Plot outputs\n",
"%matplotlib notebook\n", "%matplotlib inline\n",
"test_pred = plt.scatter(df_all[target_column_name], df_all['predicted'], color='b')\n", "pred, = plt.plot(df_all[time_column_name], df_all['predicted'], color='b')\n",
"test_test = plt.scatter(y_test, y_test, color='g')\n", "actual, = plt.plot(df_all[time_column_name], df_all[target_column_name], color='g')\n",
"plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n", "plt.xticks(fontsize=8)\n",
"plt.legend((pred, actual), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
"plt.title('Prediction vs. Actual Time-Series')\n",
"\n",
"plt.show()" "plt.show()"
] ]
}, },
@@ -408,16 +454,16 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Using lags and rolling window features to improve the forecast" "### Using lags and rolling window features"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"We did not use lags in the previous model specification. In effect, the prediction was the result of a simple regression on date, grain and any additional features. This is often a very good prediction as common time series patterns like seasonality and trends can be captured in this manner. Such simple regression is horizon-less: it doesn't matter how far into the future we are predicting, because we are not using past data.\n", "We did not use lags in the previous model specification. In effect, the prediction was the result of a simple regression on date, grain and any additional features. This is often a very good prediction as common time series patterns like seasonality and trends can be captured in this manner. Such simple regression is horizon-less: it doesn't matter how far into the future we are predicting, because we are not using past data. In the previous example, the horizon was only used to split the data for cross-validation.\n",
"\n", "\n",
"Now that we configured target lags, that is the previous values of the target variables, and the prediction is no longer horizon-less. We therefore must specify the `max_horizon` that the model will learn to forecast. The `target_lags` keyword specifies how far back we will construct the lags of the target variable, and the `target_rolling_window_size` specifies the size of the rolling window over which we will generate the `max`, `min` and `sum` features." "Now that we configured target lags, that is the previous values of the target variables, and the prediction is no longer horizon-less. We therefore must still specify the `max_horizon` that the model will learn to forecast. The `target_lags` keyword specifies how far back we will construct the lags of the target variable, and the `target_rolling_window_size` specifies the size of the rolling window over which we will generate the `max`, `min` and `sum` features."
] ]
}, },
{ {
@@ -426,27 +472,32 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"automl_settings_lags = {\n", "time_series_settings_with_lags = {\n",
" 'time_column_name': time_column_name,\n", " 'time_column_name': time_column_name,\n",
" 'target_lags': 1,\n", " 'max_horizon': max_horizon,\n",
" 'target_rolling_window_size': 5,\n", " 'target_lags': 12,\n",
" # you MUST set the max_horizon when using lags and rolling windows\n", " 'target_rolling_window_size': 4\n",
" # it is optional when looking-back features are not used \n",
" 'max_horizon': len(y_test), # only one grain\n",
"}\n", "}\n",
"\n", "\n",
"\n", "automl_config_lags = AutoMLConfig(task='forecasting',\n",
"automl_config_lags = AutoMLConfig(task = 'forecasting',\n", " debug_log='automl_nyc_energy_errors.log',\n",
" debug_log = 'automl_nyc_energy_errors.log',\n", " primary_metric='normalized_root_mean_squared_error',\n",
" primary_metric='normalized_root_mean_squared_error',\n", " blacklist_models=['ElasticNet','ExtremeRandomTrees','GradientBoosting'],\n",
" iterations = 10,\n", " iterations=10,\n",
" iteration_timeout_minutes = 5,\n", " iteration_timeout_minutes=10,\n",
" X = X_train,\n", " X=X_train,\n",
" y = y_train,\n", " y=y_train,\n",
" n_cross_validations = 3,\n", " n_cross_validations=3,\n",
" path=project_folder,\n", " path=project_folder,\n",
" verbosity = logging.INFO,\n", " verbosity=logging.INFO,\n",
" **automl_settings_lags)" " **time_series_settings_with_lags)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We now start a new local run, this time with lag and rolling window featurization. AutoML applies featurizations in the setup stage, prior to iterating over ML models. The full training set is featurized first, followed by featurization of each of the CV splits. Lag and rolling window features introduce additional complexity, so the run will take longer than in the previous example that lacked these featurizations."
] ]
}, },
{ {
@@ -493,10 +544,11 @@
"print('MAPE: %.2f' % MAPE(df_lags[target_column_name], df_lags['predicted']))\n", "print('MAPE: %.2f' % MAPE(df_lags[target_column_name], df_lags['predicted']))\n",
"\n", "\n",
"# Plot outputs\n", "# Plot outputs\n",
"%matplotlib notebook\n", "%matplotlib inline\n",
"test_pred = plt.scatter(df_lags[target_column_name], df_lags['predicted'], color='b')\n", "pred, = plt.plot(df_lags[time_column_name], df_lags['predicted'], color='b')\n",
"test_test = plt.scatter(y_test, y_test, color='g')\n", "actual, = plt.plot(df_lags[time_column_name], df_lags[target_column_name], color='g')\n",
"plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n", "plt.xticks(fontsize=8)\n",
"plt.legend((pred, actual), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
"plt.show()" "plt.show()"
] ]
}, },
@@ -516,8 +568,8 @@
"from azureml.train.automl.automlexplainer import explain_model\n", "from azureml.train.automl.automlexplainer import explain_model\n",
"\n", "\n",
"# feature names are everything in the transformed data except the target\n", "# feature names are everything in the transformed data except the target\n",
"features = X_trans.columns[:-1]\n", "features = X_trans_lags.columns[:-1]\n",
"expl = explain_model(fitted_model, X_train, X_test, features = features, best_run=best_run_lags, y_train = y_train)\n", "expl = explain_model(fitted_model_lags, X_train.copy(), X_test.copy(), features=features, best_run=best_run_lags, y_train=y_train)\n",
"# unpack the tuple\n", "# unpack the tuple\n",
"shap_values, expected_values, feat_overall_imp, feat_names, per_class_summary, per_class_imp = expl\n", "shap_values, expected_values, feat_overall_imp, feat_names, per_class_summary, per_class_imp = expl\n",
"best_run_lags" "best_run_lags"
@@ -536,7 +588,7 @@
"metadata": { "metadata": {
"authors": [ "authors": [
{ {
"name": "xiaga, tosingli" "name": "erwright"
} }
], ],
"kernelspec": { "kernelspec": {
@@ -554,7 +606,7 @@
"name": "python", "name": "python",
"nbconvert_exporter": "python", "nbconvert_exporter": "python",
"pygments_lexer": "ipython3", "pygments_lexer": "ipython3",
"version": "3.6.7" "version": "3.6.8"
} }
}, },
"nbformat": 4, "nbformat": 4,

View File

@@ -0,0 +1,10 @@
name: auto-ml-forecasting-energy-demand
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml
- statsmodels
- azureml-explain-model

View File

@@ -37,16 +37,10 @@
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Introduction\n", "## Introduction\n",
"In this example, we use AutoML to find and tune a time-series forecasting model.\n", "In this example, we use AutoML to train, select, and operationalize a time-series forecasting model for multiple time-series.\n",
"\n", "\n",
"Make sure you have executed the [configuration notebook](../../../configuration.ipynb) before running this notebook.\n", "Make sure you have executed the [configuration notebook](../../../configuration.ipynb) before running this notebook.\n",
"\n", "\n",
"In this notebook, you will:\n",
"1. Create an Experiment in an existing Workspace\n",
"2. Instantiate an AutoMLConfig \n",
"3. Find and train a forecasting model using local compute\n",
"4. Evaluate the performance of the model\n",
"\n",
"The examples in the follow code samples use the University of Chicago's Dominick's Finer Foods dataset to forecast orange juice sales. Dominick's was a grocery chain in the Chicago metropolitan area." "The examples in the follow code samples use the University of Chicago's Dominick's Finer Foods dataset to forecast orange juice sales. Dominick's was a grocery chain in the Chicago metropolitan area."
] ]
}, },
@@ -67,6 +61,10 @@
"import pandas as pd\n", "import pandas as pd\n",
"import numpy as np\n", "import numpy as np\n",
"import logging\n", "import logging\n",
"import warnings\n",
"\n",
"# Squash warning messages for cleaner output in the notebook\n",
"warnings.showwarning = lambda *args, **kwargs: None\n",
"\n", "\n",
"from azureml.core.workspace import Workspace\n", "from azureml.core.workspace import Workspace\n",
"from azureml.core.experiment import Experiment\n", "from azureml.core.experiment import Experiment\n",
@@ -78,7 +76,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"As part of the setup you have already created a <b>Workspace</b>. To run AutoML, you also need to create an <b>Experiment</b>. An Experiment is a named object in a Workspace which represents a predictive task, the output of which is a trained model and a set of evaluation metrics for the model. " "As part of the setup you have already created a <b>Workspace</b>. To run AutoML, you also need to create an <b>Experiment</b>. An Experiment corresponds to a prediction problem you are trying to solve, while a Run corresponds to a specific approach to the problem. "
] ]
}, },
{ {
@@ -232,7 +230,7 @@
"\n", "\n",
"For forecasting tasks, there are some additional parameters that can be set: the name of the column holding the date/time, the grain column names, and the maximum forecast horizon. A time column is required for forecasting, while the grain is optional. If a grain is not given, AutoML assumes that the whole dataset is a single time-series. We also pass a list of columns to drop prior to modeling. The _logQuantity_ column is completely correlated with the target quantity, so it must be removed to prevent a target leak.\n", "For forecasting tasks, there are some additional parameters that can be set: the name of the column holding the date/time, the grain column names, and the maximum forecast horizon. A time column is required for forecasting, while the grain is optional. If a grain is not given, AutoML assumes that the whole dataset is a single time-series. We also pass a list of columns to drop prior to modeling. The _logQuantity_ column is completely correlated with the target quantity, so it must be removed to prevent a target leak.\n",
"\n", "\n",
"The forecast horizon is given in units of the time-series frequency; for instance, the OJ series frequency is weekly, so a horizon of 20 means that a trained model will estimate sales up-to 20 weeks beyond the latest date in the training data for each series. In this example, we set the maximum horizon to the number of samples per series in the test set (n_test_periods). Generally, the value of this parameter will be dictated by business needs. For example, a demand planning organizaion that needs to estimate the next month of sales would set the horizon accordingly. \n", "The forecast horizon is given in units of the time-series frequency; for instance, the OJ series frequency is weekly, so a horizon of 20 means that a trained model will estimate sales up-to 20 weeks beyond the latest date in the training data for each series. In this example, we set the maximum horizon to the number of samples per series in the test set (n_test_periods). Generally, the value of this parameter will be dictated by business needs. For example, a demand planning organizaion that needs to estimate the next month of sales would set the horizon accordingly. Please see the [energy_demand notebook](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/automated-machine-learning/forecasting-energy-demand) for more discussion of forecast horizon.\n",
"\n", "\n",
"Finally, a note about the cross-validation (CV) procedure for time-series data. AutoML uses out-of-sample error estimates to select a best pipeline/model, so it is important that the CV fold splitting is done correctly. Time-series can violate the basic statistical assumptions of the canonical K-Fold CV strategy, so AutoML implements a [rolling origin validation](https://robjhyndman.com/hyndsight/tscv/) procedure to create CV folds for time-series data. To use this procedure, you just need to specify the desired number of CV folds in the AutoMLConfig object. It is also possible to bypass CV and use your own validation set by setting the *X_valid* and *y_valid* parameters of AutoMLConfig.\n", "Finally, a note about the cross-validation (CV) procedure for time-series data. AutoML uses out-of-sample error estimates to select a best pipeline/model, so it is important that the CV fold splitting is done correctly. Time-series can violate the basic statistical assumptions of the canonical K-Fold CV strategy, so AutoML implements a [rolling origin validation](https://robjhyndman.com/hyndsight/tscv/) procedure to create CV folds for time-series data. To use this procedure, you just need to specify the desired number of CV folds in the AutoMLConfig object. It is also possible to bypass CV and use your own validation set by setting the *X_valid* and *y_valid* parameters of AutoMLConfig.\n",
"\n", "\n",
@@ -246,7 +244,8 @@
"|**X**|Training matrix of features as a pandas DataFrame, shape = [n_training_samples, n_features]|\n", "|**X**|Training matrix of features as a pandas DataFrame, shape = [n_training_samples, n_features]|\n",
"|**y**|Target values as a numpy.ndarray, shape = [n_training_samples, ]|\n", "|**y**|Target values as a numpy.ndarray, shape = [n_training_samples, ]|\n",
"|**n_cross_validations**|Number of cross-validation folds to use for model/pipeline selection|\n", "|**n_cross_validations**|Number of cross-validation folds to use for model/pipeline selection|\n",
"|**enable_ensembling**|Allow AutoML to create ensembles of the best performing models\n", "|**enable_voting_ensemble**|Allow AutoML to create a Voting ensemble of the best performing models\n",
"|**enable_stack_ensemble**|Allow AutoML to create a Stack ensemble of the best performing models\n",
"|**debug_log**|Log file path for writing debugging information\n", "|**debug_log**|Log file path for writing debugging information\n",
"|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder.|\n", "|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder.|\n",
"|**time_column_name**|Name of the datetime column in the input data|\n", "|**time_column_name**|Name of the datetime column in the input data|\n",
@@ -265,7 +264,7 @@
" 'time_column_name': time_column_name,\n", " 'time_column_name': time_column_name,\n",
" 'grain_column_names': grain_column_names,\n", " 'grain_column_names': grain_column_names,\n",
" 'drop_column_names': ['logQuantity'],\n", " 'drop_column_names': ['logQuantity'],\n",
" 'max_horizon': n_test_periods # optional\n", " 'max_horizon': n_test_periods\n",
"}\n", "}\n",
"\n", "\n",
"automl_config = AutoMLConfig(task='forecasting',\n", "automl_config = AutoMLConfig(task='forecasting',\n",
@@ -274,8 +273,9 @@
" iterations=10,\n", " iterations=10,\n",
" X=X_train,\n", " X=X_train,\n",
" y=y_train,\n", " y=y_train,\n",
" n_cross_validations=5,\n", " n_cross_validations=3,\n",
" enable_ensembling=False,\n", " enable_voting_ensemble=False,\n",
" enable_stack_ensemble=False,\n",
" path=project_folder,\n", " path=project_folder,\n",
" verbosity=logging.INFO,\n", " verbosity=logging.INFO,\n",
" **time_series_settings)" " **time_series_settings)"
@@ -320,7 +320,8 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"# Predict\n", "# Forecasting\n",
"\n",
"Now that we have retrieved the best pipeline/model, it can be used to make predictions on test data. First, we remove the target values from the test set:" "Now that we have retrieved the best pipeline/model, it can be used to make predictions on test data. First, we remove the target values from the test set:"
] ]
}, },
@@ -464,7 +465,7 @@
"# Plot outputs\n", "# Plot outputs\n",
"import matplotlib.pyplot as plt\n", "import matplotlib.pyplot as plt\n",
"\n", "\n",
"%matplotlib notebook\n", "%matplotlib inline\n",
"test_pred = plt.scatter(df_all[target_column_name], df_all['predicted'], color='b')\n", "test_pred = plt.scatter(df_all[target_column_name], df_all['predicted'], color='b')\n",
"test_test = plt.scatter(y_test, y_test, color='g')\n", "test_test = plt.scatter(y_test, y_test, color='g')\n",
"plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n", "plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
@@ -664,10 +665,10 @@
"conda_env_file_name = 'fcast_env.yml'\n", "conda_env_file_name = 'fcast_env.yml'\n",
"\n", "\n",
"dependencies = ml_run.get_run_sdk_dependencies(iteration = best_iteration)\n", "dependencies = ml_run.get_run_sdk_dependencies(iteration = best_iteration)\n",
"for p in ['azureml-train-automl', 'azureml-sdk', 'azureml-core']:\n", "for p in ['azureml-train-automl', 'azureml-core']:\n",
" print('{}\\t{}'.format(p, dependencies[p]))\n", " print('{}\\t{}'.format(p, dependencies[p]))\n",
"\n", "\n",
"myenv = CondaDependencies.create(conda_packages=['numpy','scikit-learn'], pip_packages=['azureml-sdk[automl]'])\n", "myenv = CondaDependencies.create(conda_packages=['numpy','scikit-learn'], pip_packages=['azureml-train-automl'])\n",
"\n", "\n",
"myenv.save_to_file('.', conda_env_file_name)" "myenv.save_to_file('.', conda_env_file_name)"
] ]
@@ -689,7 +690,7 @@
" content = cefr.read()\n", " content = cefr.read()\n",
"\n", "\n",
"with open(conda_env_file_name, 'w') as cefw:\n", "with open(conda_env_file_name, 'w') as cefw:\n",
" cefw.write(content.replace(azureml.core.VERSION, dependencies['azureml-sdk']))\n", " cefw.write(content.replace(azureml.core.VERSION, dependencies['azureml-train-automl']))\n",
"\n", "\n",
"# Substitute the actual model id in the script file.\n", "# Substitute the actual model id in the script file.\n",
"\n", "\n",
@@ -830,7 +831,7 @@
"metadata": { "metadata": {
"authors": [ "authors": [
{ {
"name": "erwright, tosingli" "name": "erwright"
} }
], ],
"kernelspec": { "kernelspec": {
@@ -848,7 +849,7 @@
"name": "python", "name": "python",
"nbconvert_exporter": "python", "nbconvert_exporter": "python",
"pygments_lexer": "ipython3", "pygments_lexer": "ipython3",
"version": "3.6.7" "version": "3.6.8"
} }
}, },
"nbformat": 4, "nbformat": 4,

View File

@@ -0,0 +1,9 @@
name: auto-ml-forecasting-orange-juice-sales
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml
- statsmodels

View File

@@ -360,7 +360,10 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"fitted_model.named_steps['datatransformer'].get_featurization_summary()" "# Get the featurization summary as a list of JSON\n",
"featurization_summary = fitted_model.named_steps['datatransformer'].get_featurization_summary()\n",
"# View the featurization summary as a pandas dataframe\n",
"pd.DataFrame.from_records(featurization_summary)"
] ]
}, },
{ {

View File

@@ -0,0 +1,8 @@
name: auto-ml-missing-data-blacklist-early-termination
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -0,0 +1,9 @@
name: auto-ml-model-explanation
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml
- azureml-explain-model

View File

@@ -0,0 +1,10 @@
name: auto-ml-regression-concrete-strength
dependencies:
- pip:
- azureml-sdk
- azureml-defaults
- azureml-explain-model
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -0,0 +1,10 @@
name: auto-ml-regression-hardware-performance
dependencies:
- pip:
- azureml-sdk
- azureml-defaults
- azureml-explain-model
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -0,0 +1,9 @@
name: auto-ml-regression
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml
- paramiko<2.5.0

View File

@@ -0,0 +1,548 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/automated-machine-learning/remote-amlcompute/auto-ml-remote-amlcompute.png)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Automated Machine Learning\n",
"_**Remote Execution using AmlCompute**_\n",
"\n",
"## Contents\n",
"1. [Introduction](#Introduction)\n",
"1. [Setup](#Setup)\n",
"1. [Data](#Data)\n",
"1. [Train](#Train)\n",
"1. [Results](#Results)\n"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Introduction\n",
"In this example we use the scikit-learn's [iris dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_iris.html) to showcase how you can use AutoML for a simple classification problem.\n",
"\n",
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
"\n",
"In this notebook you would see\n",
"1. Create an `Experiment` in an existing `Workspace`.\n",
"2. Create or Attach existing AmlCompute to a workspace.\n",
"3. Configure AutoML using `AutoMLConfig`.\n",
"4. Train the model using AmlCompute with ONNX compatible config on.\n",
"5. Explore the results and save the ONNX model.\n",
"6. Inference with the ONNX model.\n",
"\n",
"In addition this notebook showcases the following features\n",
"- **Parallel** executions for iterations\n",
"- **Asynchronous** tracking of progress\n",
"- **Cancellation** of individual iterations or the entire run\n",
"- Retrieving models for any iteration or logged metric\n",
"- Specifying AutoML settings as `**kwargs`"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Setup\n",
"\n",
"As part of the setup you have already created an Azure ML `Workspace` object. For AutoML you will need to create an `Experiment` object, which is a named object in a `Workspace` used to run experiments."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import logging\n",
"import os\n",
"\n",
"import pandas as pd\n",
"from sklearn import datasets\n",
"from sklearn.model_selection import train_test_split\n",
"\n",
"import azureml.core\n",
"from azureml.core.experiment import Experiment\n",
"from azureml.core.workspace import Workspace\n",
"from azureml.core.dataset import Dataset\n",
"from azureml.train.automl import AutoMLConfig"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ws = Workspace.from_config()\n",
"\n",
"# Choose a name for the run history container in the workspace.\n",
"experiment_name = 'automl-remote-amlcompute-with-onnx'\n",
"project_folder = './project'\n",
"\n",
"experiment = Experiment(ws, experiment_name)\n",
"\n",
"output = {}\n",
"output['SDK version'] = azureml.core.VERSION\n",
"output['Subscription ID'] = ws.subscription_id\n",
"output['Workspace Name'] = ws.name\n",
"output['Resource Group'] = ws.resource_group\n",
"output['Location'] = ws.location\n",
"output['Project Directory'] = project_folder\n",
"output['Experiment Name'] = experiment.name\n",
"pd.set_option('display.max_colwidth', -1)\n",
"outputDf = pd.DataFrame(data = output, index = [''])\n",
"outputDf.T"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Create or Attach existing AmlCompute\n",
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for your AutoML run. In this tutorial, you create `AmlCompute` as your training compute resource.\n",
"\n",
"**Creation of AmlCompute takes approximately 5 minutes.** If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
"\n",
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.compute import AmlCompute\n",
"from azureml.core.compute import ComputeTarget\n",
"\n",
"# Choose a name for your cluster.\n",
"amlcompute_cluster_name = \"automlc2\"\n",
"\n",
"found = False\n",
"# Check if this compute target already exists in the workspace.\n",
"cts = ws.compute_targets\n",
"if amlcompute_cluster_name in cts and cts[amlcompute_cluster_name].type == 'AmlCompute':\n",
" found = True\n",
" print('Found existing compute target.')\n",
" compute_target = cts[amlcompute_cluster_name]\n",
"\n",
"if not found:\n",
" print('Creating a new compute target...')\n",
" provisioning_config = AmlCompute.provisioning_configuration(vm_size = \"STANDARD_D2_V2\", # for GPU, use \"STANDARD_NC6\"\n",
" #vm_priority = 'lowpriority', # optional\n",
" max_nodes = 6)\n",
"\n",
" # Create the cluster.\\n\",\n",
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, provisioning_config)\n",
"\n",
"print('Checking cluster status...')\n",
"# Can poll for a minimum number of nodes and for a specific timeout.\n",
"# If no min_node_count is provided, it will use the scale settings for the cluster.\n",
"compute_target.wait_for_completion(show_output = True, min_node_count = None, timeout_in_minutes = 20)\n",
"\n",
"# For a more detailed view of current AmlCompute status, use get_status()."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Data\n",
"For remote executions, you need to make the data accessible from the remote compute.\n",
"This can be done by uploading the data to DataStore.\n",
"In this example, we upload scikit-learn's [load_iris](https://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_iris.html) data."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"iris = datasets.load_iris()\n",
"\n",
"if not os.path.isdir('data'):\n",
" os.mkdir('data')\n",
"\n",
"if not os.path.exists(project_folder):\n",
" os.makedirs(project_folder)\n",
"\n",
"X_train, X_test, y_train, y_test = train_test_split(iris.data, \n",
" iris.target, \n",
" test_size=0.2, \n",
" random_state=0)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Ensure the x_train and x_test are pandas DataFrame."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Convert the X_train and X_test to pandas DataFrame and set column names,\n",
"# This is needed for initializing the input variable names of ONNX model, \n",
"# and the prediction with the ONNX model using the inference helper.\n",
"X_train = pd.DataFrame(X_train, columns=['c1', 'c2', 'c3', 'c4'])\n",
"X_test = pd.DataFrame(X_test, columns=['c1', 'c2', 'c3', 'c4'])\n",
"y_train = pd.DataFrame(y_train, columns=['label'])\n",
"\n",
"X_train.to_csv(\"data/X_train.csv\", index=False)\n",
"y_train.to_csv(\"data/y_train.csv\", index=False)\n",
"\n",
"ds = ws.get_default_datastore()\n",
"ds.upload(src_dir='./data', target_path='irisdata', overwrite=True, show_progress=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.runconfig import RunConfiguration\n",
"from azureml.core.conda_dependencies import CondaDependencies\n",
"import pkg_resources\n",
"\n",
"# create a new RunConfig object\n",
"conda_run_config = RunConfiguration(framework=\"python\")\n",
"\n",
"# Set compute target to AmlCompute\n",
"conda_run_config.target = compute_target\n",
"conda_run_config.environment.docker.enabled = True\n",
"\n",
"cd = CondaDependencies.create(conda_packages=['numpy','py-xgboost<=0.80'])\n",
"conda_run_config.environment.python.conda_dependencies = cd"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Creating a TabularDataset\n",
"\n",
"Defined X and y as `TabularDataset`s, which are passed to automated machine learning in the AutoMLConfig."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"X = Dataset.Tabular.from_delimited_files(path=ds.path('irisdata/X_train.csv'))\n",
"y = Dataset.Tabular.from_delimited_files(path=ds.path('irisdata/y_train.csv'))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Train\n",
"\n",
"You can specify `automl_settings` as `**kwargs` as well. Also note that you can use a `get_data()` function for local excutions too.\n",
"\n",
"**Note:** Set the parameter enable_onnx_compatible_models=True, if you also want to generate the ONNX compatible models. Please note, the forecasting task and TensorFlow models are not ONNX compatible yet.\n",
"\n",
"**Note:** When using AmlCompute, you can't pass Numpy arrays directly to the fit method.\n",
"\n",
"|Property|Description|\n",
"|-|-|\n",
"|**primary_metric**|This is the metric that you want to optimize. Classification supports the following primary metrics: <br><i>accuracy</i><br><i>AUC_weighted</i><br><i>average_precision_score_weighted</i><br><i>norm_macro_recall</i><br><i>precision_score_weighted</i>|\n",
"|**iteration_timeout_minutes**|Time limit in minutes for each iteration.|\n",
"|**iterations**|Number of iterations. In each iteration AutoML trains a specific pipeline with the data.|\n",
"|**n_cross_validations**|Number of cross validation splits.|\n",
"|**max_concurrent_iterations**|Maximum number of iterations that would be executed in parallel. This should be less than the number of cores on the DSVM.|\n",
"|**enable_onnx_compatible_models**|Enable the ONNX compatible models in the experiment.|"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Set the preprocess=True, currently the InferenceHelper only supports this mode."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"automl_settings = {\n",
" \"iteration_timeout_minutes\": 10,\n",
" \"iterations\": 10,\n",
" \"n_cross_validations\": 5,\n",
" \"primary_metric\": 'AUC_weighted',\n",
" \"preprocess\": True,\n",
" \"max_concurrent_iterations\": 5,\n",
" \"verbosity\": logging.INFO\n",
"}\n",
"\n",
"automl_config = AutoMLConfig(task = 'classification',\n",
" debug_log = 'automl_errors.log',\n",
" path = project_folder,\n",
" run_configuration=conda_run_config,\n",
" X = X,\n",
" y = y,\n",
" enable_onnx_compatible_models=True, # This will generate ONNX compatible models.\n",
" **automl_settings\n",
" )"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Call the `submit` method on the experiment object and pass the run configuration. For remote runs the execution is asynchronous, so you will see the iterations get populated as they complete. You can interact with the widgets and models even when the experiment is running to retrieve the best model up to that point. Once you are satisfied with the model, you can cancel a particular iteration or the whole run.\n",
"In this example, we specify `show_output = False` to suppress console output while the run is in progress."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"remote_run = experiment.submit(automl_config, show_output = False)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"remote_run"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Results\n",
"\n",
"#### Loading executed runs\n",
"In case you need to load a previously executed run, enable the cell below and replace the `run_id` value."
]
},
{
"cell_type": "raw",
"metadata": {},
"source": [
"remote_run = AutoMLRun(experiment = experiment, run_id = 'AutoML_5db13491-c92a-4f1d-b622-8ab8d973a058')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Widget for Monitoring Runs\n",
"\n",
"The widget will first report a \"loading\" status while running the first iteration. After completing the first iteration, an auto-updating graph and table will be shown. The widget will refresh once per minute, so you should see the graph update as child runs complete.\n",
"\n",
"You can click on a pipeline to see run properties and output logs. Logs are also available on the DSVM under `/tmp/azureml_run/{iterationid}/azureml-logs`\n",
"\n",
"**Note:** The widget displays a link at the bottom. Use this link to open a web interface to explore the individual run details."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"remote_run"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.widgets import RunDetails\n",
"RunDetails(remote_run).show() "
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Wait until the run finishes.\n",
"remote_run.wait_for_completion(show_output = True)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Cancelling Runs\n",
"\n",
"You can cancel ongoing remote runs using the `cancel` and `cancel_iteration` functions."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Cancel the ongoing experiment and stop scheduling new iterations.\n",
"# remote_run.cancel()\n",
"\n",
"# Cancel iteration 1 and move onto iteration 2.\n",
"# remote_run.cancel_iteration(1)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Retrieve the Best ONNX Model\n",
"\n",
"Below we select the best pipeline from our iterations. The `get_output` method returns the best run and the fitted model. The Model includes the pipeline and any pre-processing. Overloads on `get_output` allow you to retrieve the best run and fitted model for *any* logged metric or for a particular *iteration*.\n",
"\n",
"Set the parameter return_onnx_model=True to retrieve the best ONNX model, instead of the Python model."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"best_run, onnx_mdl = remote_run.get_output(return_onnx_model=True)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Save the best ONNX model"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.automl.core.onnx_convert import OnnxConverter\n",
"onnx_fl_path = \"./best_model.onnx\"\n",
"OnnxConverter.save_onnx_model(onnx_mdl, onnx_fl_path)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Predict with the ONNX model, using onnxruntime package"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import sys\n",
"import json\n",
"from azureml.automl.core.onnx_convert import OnnxConvertConstants\n",
"from azureml.train.automl import constants\n",
"\n",
"if sys.version_info < OnnxConvertConstants.OnnxIncompatiblePythonVersion:\n",
" python_version_compatible = True\n",
"else:\n",
" python_version_compatible = False\n",
"\n",
"try:\n",
" import onnxruntime\n",
" from azureml.automl.core.onnx_convert import OnnxInferenceHelper \n",
" onnxrt_present = True\n",
"except ImportError:\n",
" onnxrt_present = False\n",
"\n",
"def get_onnx_res(run):\n",
" res_path = 'onnx_resource.json'\n",
" run.download_file(name=constants.MODEL_RESOURCE_PATH_ONNX, output_file_path=res_path)\n",
" with open(res_path) as f:\n",
" return json.load(f)\n",
"\n",
"if onnxrt_present and python_version_compatible: \n",
" mdl_bytes = onnx_mdl.SerializeToString()\n",
" onnx_res = get_onnx_res(best_run)\n",
"\n",
" onnxrt_helper = OnnxInferenceHelper(mdl_bytes, onnx_res)\n",
" pred_onnx, pred_prob_onnx = onnxrt_helper.predict(X_test)\n",
"\n",
" print(pred_onnx)\n",
" print(pred_prob_onnx)\n",
"else:\n",
" if not python_version_compatible:\n",
" print('Please use Python version 3.6 or 3.7 to run the inference helper.') \n",
" if not onnxrt_present:\n",
" print('Please install the onnxruntime package to do the prediction with ONNX model.')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"authors": [
{
"name": "savitam"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.6"
}
},
"nbformat": 4,
"nbformat_minor": 2
}

View File

@@ -0,0 +1,11 @@
name: auto-ml-remote-amlcompute-with-onnx
dependencies:
- pip:
- azureml-sdk
- azureml-defaults
- azureml-explain-model
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml
- onnxruntime

View File

@@ -74,7 +74,6 @@
"source": [ "source": [
"import logging\n", "import logging\n",
"import os\n", "import os\n",
"import csv\n",
"\n", "\n",
"from matplotlib import pyplot as plt\n", "from matplotlib import pyplot as plt\n",
"import numpy as np\n", "import numpy as np\n",
@@ -84,6 +83,7 @@
"import azureml.core\n", "import azureml.core\n",
"from azureml.core.experiment import Experiment\n", "from azureml.core.experiment import Experiment\n",
"from azureml.core.workspace import Workspace\n", "from azureml.core.workspace import Workspace\n",
"from azureml.core.dataset import Dataset\n",
"from azureml.train.automl import AutoMLConfig" "from azureml.train.automl import AutoMLConfig"
] ]
}, },
@@ -136,7 +136,7 @@
"from azureml.core.compute import ComputeTarget\n", "from azureml.core.compute import ComputeTarget\n",
"\n", "\n",
"# Choose a name for your cluster.\n", "# Choose a name for your cluster.\n",
"amlcompute_cluster_name = \"cpu-cluster\"\n", "amlcompute_cluster_name = \"automlc2\"\n",
"\n", "\n",
"found = False\n", "found = False\n",
"# Check if this compute target already exists in the workspace.\n", "# Check if this compute target already exists in the workspace.\n",
@@ -155,11 +155,12 @@
" # Create the cluster.\\n\",\n", " # Create the cluster.\\n\",\n",
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, provisioning_config)\n", " compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, provisioning_config)\n",
"\n", "\n",
" # Can poll for a minimum number of nodes and for a specific timeout.\n", "print('Checking cluster status...')\n",
" # If no min_node_count is provided, it will use the scale settings for the cluster.\n", "# Can poll for a minimum number of nodes and for a specific timeout.\n",
" compute_target.wait_for_completion(show_output = True, min_node_count = None, timeout_in_minutes = 20)\n", "# If no min_node_count is provided, it will use the scale settings for the cluster.\n",
"compute_target.wait_for_completion(show_output = True, min_node_count = None, timeout_in_minutes = 20)\n",
"\n", "\n",
" # For a more detailed view of current AmlCompute status, use get_status()." "# For a more detailed view of current AmlCompute status, use get_status()."
] ]
}, },
{ {
@@ -186,18 +187,11 @@
"if not os.path.exists(project_folder):\n", "if not os.path.exists(project_folder):\n",
" os.makedirs(project_folder)\n", " os.makedirs(project_folder)\n",
" \n", " \n",
"pd.DataFrame(data_train.data).to_csv(\"data/X_train.tsv\", index=False, header=False, quoting=csv.QUOTE_ALL, sep=\"\\t\")\n", "pd.DataFrame(data_train.data[100:,:]).to_csv(\"data/X_train.csv\", index=False)\n",
"pd.DataFrame(data_train.target).to_csv(\"data/y_train.tsv\", index=False, header=False, sep=\"\\t\")\n", "pd.DataFrame(data_train.target[100:]).to_csv(\"data/y_train.csv\", index=False)\n",
"\n", "\n",
"ds = ws.get_default_datastore()\n", "ds = ws.get_default_datastore()\n",
"ds.upload(src_dir='./data', target_path='bai_data', overwrite=True, show_progress=True)\n", "ds.upload(src_dir='./data', target_path='digitsdata', overwrite=True, show_progress=True)"
"\n",
"from azureml.core.runconfig import DataReferenceConfiguration\n",
"dr = DataReferenceConfiguration(datastore_name=ds.name, \n",
" path_on_datastore='bai_data', \n",
" path_on_compute='/tmp/azureml_runs',\n",
" mode='download', # download files from datastore to compute target\n",
" overwrite=False)"
] ]
}, },
{ {
@@ -208,6 +202,7 @@
"source": [ "source": [
"from azureml.core.runconfig import RunConfiguration\n", "from azureml.core.runconfig import RunConfiguration\n",
"from azureml.core.conda_dependencies import CondaDependencies\n", "from azureml.core.conda_dependencies import CondaDependencies\n",
"import pkg_resources\n",
"\n", "\n",
"# create a new RunConfig object\n", "# create a new RunConfig object\n",
"conda_run_config = RunConfiguration(framework=\"python\")\n", "conda_run_config = RunConfiguration(framework=\"python\")\n",
@@ -215,30 +210,28 @@
"# Set compute target to AmlCompute\n", "# Set compute target to AmlCompute\n",
"conda_run_config.target = compute_target\n", "conda_run_config.target = compute_target\n",
"conda_run_config.environment.docker.enabled = True\n", "conda_run_config.environment.docker.enabled = True\n",
"conda_run_config.environment.docker.base_image = azureml.core.runconfig.DEFAULT_CPU_IMAGE\n",
"\n", "\n",
"# set the data reference of the run coonfiguration\n", "cd = CondaDependencies.create(conda_packages=['numpy','py-xgboost<=0.80'])\n",
"conda_run_config.data_references = {ds.name: dr}\n",
"\n",
"cd = CondaDependencies.create(pip_packages=['azureml-sdk[automl]'], conda_packages=['numpy','py-xgboost<=0.80'])\n",
"conda_run_config.environment.python.conda_dependencies = cd" "conda_run_config.environment.python.conda_dependencies = cd"
] ]
}, },
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Creating TabularDataset\n",
"\n",
"Defined X and y as `TabularDataset`s, which are passed to Automated ML in the AutoMLConfig. `from_delimited_files` by default sets the `infer_column_types` to true, which will infer the columns type automatically. If you do wish to manually set the column types, you can set the `set_column_types` argument to manually set the type of each columns."
]
},
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"%%writefile $project_folder/get_data.py\n", "X = Dataset.Tabular.from_delimited_files(path=ds.path('digitsdata/X_train.csv'))\n",
"\n", "y = Dataset.Tabular.from_delimited_files(path=ds.path('digitsdata/y_train.csv'))"
"import pandas as pd\n",
"\n",
"def get_data():\n",
" X_train = pd.read_csv(\"/tmp/azureml_runs/bai_data/X_train.tsv\", delimiter=\"\\t\", header=None, quotechar='\"')\n",
" y_train = pd.read_csv(\"/tmp/azureml_runs/bai_data/y_train.tsv\", delimiter=\"\\t\", header=None, quotechar='\"')\n",
"\n",
" return { \"X\" : X_train.values, \"y\" : y_train[0].values }\n"
] ]
}, },
{ {
@@ -280,7 +273,8 @@
" debug_log = 'automl_errors.log',\n", " debug_log = 'automl_errors.log',\n",
" path = project_folder,\n", " path = project_folder,\n",
" run_configuration=conda_run_config,\n", " run_configuration=conda_run_config,\n",
" data_script = project_folder + \"/get_data.py\",\n", " X = X,\n",
" y = y,\n",
" **automl_settings\n", " **automl_settings\n",
" )\n" " )\n"
] ]

View File

@@ -0,0 +1,10 @@
name: auto-ml-remote-amlcompute
dependencies:
- pip:
- azureml-sdk
- azureml-defaults
- azureml-explain-model
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -0,0 +1,8 @@
name: auto-ml-sample-weight
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -0,0 +1,8 @@
name: auto-ml-sparse-data-train-test-split
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -87,7 +87,7 @@ These instruction setup the integration for SQL Server 2017 on Windows.
sudo /opt/mssql/mlservices/bin/python/python -m pip install --upgrade sklearn sudo /opt/mssql/mlservices/bin/python/python -m pip install --upgrade sklearn
``` ```
7. Start SQL Server. 7. Start SQL Server.
8. Execute the files aml_model.sql, aml_connection.sql, AutoMLGetMetrics.sql, AutoMLPredict.sql and AutoMLTrain.sql in SQL Server Management Studio. 8. Execute the files aml_model.sql, aml_connection.sql, AutoMLGetMetrics.sql, AutoMLPredict.sql, AutoMLForecast.sql and AutoMLTrain.sql in SQL Server Management Studio.
9. Create an Azure Machine Learning Workspace. You can use the instructions at: [https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-workspace](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-workspace) 9. Create an Azure Machine Learning Workspace. You can use the instructions at: [https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-workspace](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-workspace)
10. Create a config.json file file using the subscription id, resource group name and workspace name that you use to create the workspace. The file is described at: [https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-configure-environment#workspace](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-configure-environment#workspace) 10. Create a config.json file file using the subscription id, resource group name and workspace name that you use to create the workspace. The file is described at: [https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-configure-environment#workspace](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-configure-environment#workspace)
11. Create an Azure service principal. You can do this with the commands: 11. Create an Azure service principal. You can do this with the commands:
@@ -109,5 +109,5 @@ First you need to load the sample data in the database.
You can then run the queries in the energy-demand folder: You can then run the queries in the energy-demand folder:
* TrainEnergyDemand.sql runs AutoML, trains multiple models on data and selects the best model. * TrainEnergyDemand.sql runs AutoML, trains multiple models on data and selects the best model.
* PredictEnergyDemand.sql predicts based on the most recent training run. * ForecastEnergyDemand.sql forecasts based on the most recent training run.
* GetMetrics.sql returns all the metrics for each model in the most recent training run. * GetMetrics.sql returns all the metrics for each model in the most recent training run.

View File

@@ -0,0 +1,23 @@
-- This shows using the AutoMLForecast stored procedure to predict using a forecasting model for the nyc_energy dataset.
DECLARE @Model NVARCHAR(MAX) = (SELECT TOP 1 Model FROM dbo.aml_model
WHERE ExperimentName = 'automl-sql-forecast'
ORDER BY CreatedDate DESC)
DECLARE @max_horizon INT = 48
DECLARE @split_time NVARCHAR(22) = (SELECT DATEADD(hour, -@max_horizon, MAX(timeStamp)) FROM nyc_energy WHERE demand IS NOT NULL)
DECLARE @TestDataQuery NVARCHAR(MAX) = '
SELECT CAST(timeStamp AS NVARCHAR(30)) AS timeStamp,
demand,
precip,
temp
FROM nyc_energy
WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL
AND timeStamp > ''' + @split_time + ''''
EXEC dbo.AutoMLForecast @input_query=@TestDataQuery,
@label_column='demand',
@time_column_name='timeStamp',
@model=@model
WITH RESULT SETS ((timeStamp DATETIME, grain NVARCHAR(255), predicted_demand FLOAT, precip FLOAT, temp FLOAT, actual_demand FLOAT))

View File

@@ -1,21 +1,25 @@
-- This shows using the AutoMLTrain stored procedure to create a forecasting model for the nyc_energy dataset. -- This shows using the AutoMLTrain stored procedure to create a forecasting model for the nyc_energy dataset.
INSERT INTO dbo.aml_model(RunId, ExperimentName, Model, LogFileText, WorkspaceName) DECLARE @max_horizon INT = 48
EXEC dbo.AutoMLTrain @input_query=' DECLARE @split_time NVARCHAR(22) = (SELECT DATEADD(hour, -@max_horizon, MAX(timeStamp)) FROM nyc_energy WHERE demand IS NOT NULL)
DECLARE @TrainDataQuery NVARCHAR(MAX) = '
SELECT CAST(timeStamp as NVARCHAR(30)) as timeStamp, SELECT CAST(timeStamp as NVARCHAR(30)) as timeStamp,
demand, demand,
precip, precip,
temp, temp
CASE WHEN timeStamp < ''2017-01-01'' THEN 0 ELSE 1 END AS is_validate_column
FROM nyc_energy FROM nyc_energy
WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL
and timeStamp < ''2017-02-01''', and timeStamp < ''' + @split_time + ''''
INSERT INTO dbo.aml_model(RunId, ExperimentName, Model, LogFileText, WorkspaceName)
EXEC dbo.AutoMLTrain @input_query= @TrainDataQuery,
@label_column='demand', @label_column='demand',
@task='forecasting', @task='forecasting',
@iterations=10, @iterations=10,
@iteration_timeout_minutes=5, @iteration_timeout_minutes=5,
@time_column_name='timeStamp', @time_column_name='timeStamp',
@is_validate_column='is_validate_column', @max_horizon=@max_horizon,
@experiment_name='automl-sql-forecast', @experiment_name='automl-sql-forecast',
@primary_metric='normalized_root_mean_squared_error' @primary_metric='normalized_root_mean_squared_error'

View File

@@ -1,141 +1,141 @@
{ {
"cells": [ "cells": [
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"# Train a model and use it for prediction\r\n", "# Train a model and use it for prediction\r\n",
"\r\n", "\r\n",
"Before running this notebook, run the auto-ml-sql-setup.ipynb notebook." "Before running this notebook, run the auto-ml-sql-setup.ipynb notebook."
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/automated-machine-learning/sql-server/energy-demand/auto-ml-sql-energy-demand.png)" "![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/automated-machine-learning/sql-server/energy-demand/auto-ml-sql-energy-demand.png)"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Set the default database" "## Set the default database"
] ]
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"USE [automl]\r\n", "USE [automl]\r\n",
"GO" "GO"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Use the AutoMLTrain stored procedure to create a forecasting model for the nyc_energy dataset." "## Use the AutoMLTrain stored procedure to create a forecasting model for the nyc_energy dataset."
] ]
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"INSERT INTO dbo.aml_model(RunId, ExperimentName, Model, LogFileText, WorkspaceName)\r\n", "INSERT INTO dbo.aml_model(RunId, ExperimentName, Model, LogFileText, WorkspaceName)\r\n",
"EXEC dbo.AutoMLTrain @input_query='\r\n", "EXEC dbo.AutoMLTrain @input_query='\r\n",
"SELECT CAST(timeStamp as NVARCHAR(30)) as timeStamp,\r\n", "SELECT CAST(timeStamp as NVARCHAR(30)) as timeStamp,\r\n",
" demand,\r\n", " demand,\r\n",
"\t precip,\r\n", "\t precip,\r\n",
"\t temp,\r\n", "\t temp,\r\n",
"\t CASE WHEN timeStamp < ''2017-01-01'' THEN 0 ELSE 1 END AS is_validate_column\r\n", "\t CASE WHEN timeStamp < ''2017-01-01'' THEN 0 ELSE 1 END AS is_validate_column\r\n",
"FROM nyc_energy\r\n", "FROM nyc_energy\r\n",
"WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL\r\n", "WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL\r\n",
"and timeStamp < ''2017-02-01''',\r\n", "and timeStamp < ''2017-02-01''',\r\n",
"@label_column='demand',\r\n", "@label_column='demand',\r\n",
"@task='forecasting',\r\n", "@task='forecasting',\r\n",
"@iterations=10,\r\n", "@iterations=10,\r\n",
"@iteration_timeout_minutes=5,\r\n", "@iteration_timeout_minutes=5,\r\n",
"@time_column_name='timeStamp',\r\n", "@time_column_name='timeStamp',\r\n",
"@is_validate_column='is_validate_column',\r\n", "@is_validate_column='is_validate_column',\r\n",
"@experiment_name='automl-sql-forecast',\r\n", "@experiment_name='automl-sql-forecast',\r\n",
"@primary_metric='normalized_root_mean_squared_error'" "@primary_metric='normalized_root_mean_squared_error'"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Use the AutoMLPredict stored procedure to predict using the forecasting model for the nyc_energy dataset." "## Use the AutoMLPredict stored procedure to predict using the forecasting model for the nyc_energy dataset."
] ]
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"DECLARE @Model NVARCHAR(MAX) = (SELECT TOP 1 Model FROM dbo.aml_model\r\n", "DECLARE @Model NVARCHAR(MAX) = (SELECT TOP 1 Model FROM dbo.aml_model\r\n",
" WHERE ExperimentName = 'automl-sql-forecast'\r\n", " WHERE ExperimentName = 'automl-sql-forecast'\r\n",
"\t\t\t\t\t\t\t\tORDER BY CreatedDate DESC)\r\n", "\t\t\t\t\t\t\t\tORDER BY CreatedDate DESC)\r\n",
"\r\n", "\r\n",
"EXEC dbo.AutoMLPredict @input_query='\r\n", "EXEC dbo.AutoMLPredict @input_query='\r\n",
"SELECT CAST(timeStamp AS NVARCHAR(30)) AS timeStamp,\r\n", "SELECT CAST(timeStamp AS NVARCHAR(30)) AS timeStamp,\r\n",
" demand,\r\n", " demand,\r\n",
"\t precip,\r\n", "\t precip,\r\n",
"\t temp\r\n", "\t temp\r\n",
"FROM nyc_energy\r\n", "FROM nyc_energy\r\n",
"WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL\r\n", "WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL\r\n",
"AND timeStamp >= ''2017-02-01''',\r\n", "AND timeStamp >= ''2017-02-01''',\r\n",
"@label_column='demand',\r\n", "@label_column='demand',\r\n",
"@model=@model\r\n", "@model=@model\r\n",
"WITH RESULT SETS ((timeStamp NVARCHAR(30), actual_demand FLOAT, precip FLOAT, temp FLOAT, predicted_demand FLOAT))" "WITH RESULT SETS ((timeStamp NVARCHAR(30), actual_demand FLOAT, precip FLOAT, temp FLOAT, predicted_demand FLOAT))"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## List all the metrics for all iterations for the most recent training run." "## List all the metrics for all iterations for the most recent training run."
] ]
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"DECLARE @RunId NVARCHAR(43)\r\n", "DECLARE @RunId NVARCHAR(43)\r\n",
"DECLARE @ExperimentName NVARCHAR(255)\r\n", "DECLARE @ExperimentName NVARCHAR(255)\r\n",
"\r\n", "\r\n",
"SELECT TOP 1 @ExperimentName=ExperimentName, @RunId=SUBSTRING(RunId, 1, 43)\r\n", "SELECT TOP 1 @ExperimentName=ExperimentName, @RunId=SUBSTRING(RunId, 1, 43)\r\n",
"FROM aml_model\r\n", "FROM aml_model\r\n",
"ORDER BY CreatedDate DESC\r\n", "ORDER BY CreatedDate DESC\r\n",
"\r\n", "\r\n",
"EXEC dbo.AutoMLGetMetrics @RunId, @ExperimentName" "EXEC dbo.AutoMLGetMetrics @RunId, @ExperimentName"
] ]
} }
],
"metadata": {
"authors": [
{
"name": "jeffshep"
}
], ],
"kernelspec": { "metadata": {
"display_name": "SQL", "authors": [
"language": "sql", {
"name": "SQL" "name": "jeffshep"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "sql",
"name": "python36"
},
"language_info": {
"name": "sql",
"version": ""
}
}, },
"language_info": { "nbformat": 4,
"name": "sql", "nbformat_minor": 2
"version": ""
}
},
"nbformat": 4,
"nbformat_minor": 2
} }

View File

@@ -0,0 +1,92 @@
-- This procedure forecast values based on a forecasting model returned by AutoMLTrain.
-- It returns a dataset with the forecasted values.
SET ANSI_NULLS ON
GO
SET QUOTED_IDENTIFIER ON
GO
CREATE OR ALTER PROCEDURE [dbo].[AutoMLForecast]
(
@input_query NVARCHAR(MAX), -- A SQL query returning data to predict on.
@model NVARCHAR(MAX), -- A model returned from AutoMLTrain.
@time_column_name NVARCHAR(255)='', -- The name of the timestamp column for forecasting.
@label_column NVARCHAR(255)='', -- Optional name of the column from input_query, which should be ignored when predicting
@y_query_column NVARCHAR(255)='', -- Optional value column that can be used for predicting.
-- If specified, this can contain values for past times (after the model was trained)
-- and contain Nan for future times.
@forecast_column_name NVARCHAR(255) = 'predicted'
-- The name of the output column containing the forecast value.
) AS
BEGIN
EXEC sp_execute_external_script @language = N'Python', @script = N'import pandas as pd
import azureml.core
import numpy as np
from azureml.train.automl import AutoMLConfig
import pickle
import codecs
model_obj = pickle.loads(codecs.decode(model.encode(), "base64"))
test_data = input_data.copy()
if label_column != "" and label_column is not None:
y_test = test_data.pop(label_column).values
else:
y_test = None
if y_query_column != "" and y_query_column is not None:
y_query = test_data.pop(y_query_column).values
else:
y_query = np.repeat(np.nan, len(test_data))
X_test = test_data
if time_column_name != "" and time_column_name is not None:
X_test[time_column_name] = pd.to_datetime(X_test[time_column_name])
y_fcst, X_trans = model_obj.forecast(X_test, y_query)
def align_outputs(y_forecast, X_trans, X_test, y_test, forecast_column_name):
# Demonstrates how to get the output aligned to the inputs
# using pandas indexes. Helps understand what happened if
# the output shape differs from the input shape, or if
# the data got re-sorted by time and grain during forecasting.
# Typical causes of misalignment are:
# * we predicted some periods that were missing in actuals -> drop from eval
# * model was asked to predict past max_horizon -> increase max horizon
# * data at start of X_test was needed for lags -> provide previous periods
df_fcst = pd.DataFrame({forecast_column_name : y_forecast})
# y and X outputs are aligned by forecast() function contract
df_fcst.index = X_trans.index
# align original X_test to y_test
X_test_full = X_test.copy()
if y_test is not None:
X_test_full[label_column] = y_test
# X_test_full does not include origin, so reset for merge
df_fcst.reset_index(inplace=True)
X_test_full = X_test_full.reset_index().drop(columns=''index'')
together = df_fcst.merge(X_test_full, how=''right'')
# drop rows where prediction or actuals are nan
# happens because of missing actuals
# or at edges of time due to lags/rolling windows
clean = together[together[[label_column, forecast_column_name]].notnull().all(axis=1)]
return(clean)
combined_output = align_outputs(y_fcst, X_trans, X_test, y_test, forecast_column_name)
'
, @input_data_1 = @input_query
, @input_data_1_name = N'input_data'
, @output_data_1_name = N'combined_output'
, @params = N'@model NVARCHAR(MAX), @time_column_name NVARCHAR(255), @label_column NVARCHAR(255), @y_query_column NVARCHAR(255), @forecast_column_name NVARCHAR(255)'
, @model = @model
, @time_column_name = @time_column_name
, @label_column = @label_column
, @y_query_column = @y_query_column
, @forecast_column_name = @forecast_column_name
END

View File

@@ -69,7 +69,10 @@ CREATE OR ALTER PROCEDURE [dbo].[AutoMLTrain]
@is_validate_column NVARCHAR(255)='', -- The name of the column in the result of @input_query that indicates if the row is for training or validation. @is_validate_column NVARCHAR(255)='', -- The name of the column in the result of @input_query that indicates if the row is for training or validation.
-- In the values of the column, 0 means for training and 1 means for validation. -- In the values of the column, 0 means for training and 1 means for validation.
@time_column_name NVARCHAR(255)='', -- The name of the timestamp column for forecasting. @time_column_name NVARCHAR(255)='', -- The name of the timestamp column for forecasting.
@connection_name NVARCHAR(255)='default' -- The AML connection to use. @connection_name NVARCHAR(255)='default', -- The AML connection to use.
@max_horizon INT = 0 -- A forecast horizon is a time span into the future (or just beyond the latest date in the training data)
-- where forecasts of the target quantity are needed.
-- For example, if data is recorded daily and max_horizon is 5, we will predict 5 days ahead.
) AS ) AS
BEGIN BEGIN
@@ -151,8 +154,10 @@ if __name__.startswith("sqlindb"):
if time_column_name != "" and time_column_name is not None: if time_column_name != "" and time_column_name is not None:
automl_settings = { "time_column_name": time_column_name } automl_settings = { "time_column_name": time_column_name }
preprocess = False preprocess = False
if max_horizon > 0:
automl_settings["max_horizon"] = max_horizon
log_file_name = "automl_errors.log" log_file_name = "automl_sqlindb_errors.log"
automl_config = AutoMLConfig(task = task, automl_config = AutoMLConfig(task = task,
debug_log = log_file_name, debug_log = log_file_name,
@@ -163,7 +168,6 @@ if __name__.startswith("sqlindb"):
n_cross_validations = n_cross_validations, n_cross_validations = n_cross_validations,
preprocess = preprocess, preprocess = preprocess,
verbosity = logging.INFO, verbosity = logging.INFO,
enable_ensembling = False,
X = X_train, X = X_train,
y = y_train, y = y_train,
path = project_folder, path = project_folder,
@@ -211,7 +215,8 @@ if __name__.startswith("sqlindb"):
@tenantid NVARCHAR(255), @tenantid NVARCHAR(255),
@appid NVARCHAR(255), @appid NVARCHAR(255),
@password NVARCHAR(255), @password NVARCHAR(255),
@config_file NVARCHAR(255)' @config_file NVARCHAR(255),
@max_horizon INT'
, @label_column = @label_column , @label_column = @label_column
, @primary_metric = @primary_metric , @primary_metric = @primary_metric
, @iterations = @iterations , @iterations = @iterations
@@ -230,5 +235,6 @@ if __name__.startswith("sqlindb"):
, @appid = @appid , @appid = @appid
, @password = @password , @password = @password
, @config_file = @config_file , @config_file = @config_file
, @max_horizon = @max_horizon
WITH RESULT SETS ((best_run NVARCHAR(250), experiment_name NVARCHAR(100), fitted_model VARCHAR(MAX), log_file_text NVARCHAR(MAX), workspace NVARCHAR(100))) WITH RESULT SETS ((best_run NVARCHAR(250), experiment_name NVARCHAR(100), fitted_model VARCHAR(MAX), log_file_text NVARCHAR(MAX), workspace NVARCHAR(100)))
END END

View File

@@ -0,0 +1,8 @@
name: auto-ml-subsampling-local
dependencies:
- pip:
- azureml-sdk
- azureml-train-automl
- azureml-widgets
- matplotlib
- pandas_ml

View File

@@ -314,25 +314,18 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Load Training Data Using DataPrep" "## Load Training Data Using Dataset"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"Automated ML takes a Dataflow as input.\n", "Automated ML takes a `TabularDataset` as input.\n",
"\n", "\n",
"If you are familiar with Pandas and have done your data preparation work in Pandas already, you can use the `read_pandas_dataframe` method in dprep to convert the DataFrame to a Dataflow.\n", "You are free to use the data preparation libraries/tools of your choice to do the require preparation and once you are done, you can write it to a datastore and create a TabularDataset from it.\n",
"```python\n",
"df = pd.read_csv(...)\n",
"# apply some transforms\n",
"dprep.read_pandas_dataframe(df, temp_folder='/path/accessible/by/both/driver/and/worker')\n",
"```\n",
"\n", "\n",
"If you just need to ingest data without doing any preparation, you can directly use AzureML Data Prep (Data Prep) to do so. The code below demonstrates this scenario. Data Prep also has data preparation capabilities, we have many [sample notebooks](https://github.com/Microsoft/AMLDataPrepDocs) demonstrating the capabilities.\n", "You will get the datastore you registered previously and pass it to Dataset for reading. The data comes from the digits dataset: `sklearn.datasets.load_digits()`. `DataPath` points to a specific location within a datastore. "
"\n",
"You will get the datastore you registered previously and pass it to Data Prep for reading. The data comes from the digits dataset: `sklearn.datasets.load_digits()`. `DataPath` points to a specific location within a datastore. "
] ]
}, },
{ {
@@ -341,21 +334,21 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"import azureml.dataprep as dprep\n", "from azureml.core.dataset import Dataset\n",
"from azureml.data.datapath import DataPath\n", "from azureml.data.datapath import DataPath\n",
"\n", "\n",
"datastore = Datastore.get(workspace = ws, datastore_name = datastore_name)\n", "datastore = Datastore.get(workspace = ws, datastore_name = datastore_name)\n",
"\n", "\n",
"X_train = dprep.read_csv(datastore.path('X.csv'))\n", "X_train = Dataset.Tabular.from_delimited_files(datastore.path('X.csv'))\n",
"y_train = dprep.read_csv(datastore.path('y.csv')).to_long(dprep.ColumnSelector(term='.*', use_regex = True))" "y_train = Dataset.Tabular.from_delimited_files(datastore.path('y.csv'))"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Review the Data Preparation Result\n", "## Review the TabularDataset\n",
"You can peek the result of a Dataflow at any range using `skip(i)` and `head(j)`. Doing so evaluates only j records for all the steps in the Dataflow, which makes it fast even against large datasets." "You can peek the result of a TabularDataset at any range using `skip(i)` and `take(j).to_pandas_dataframe()`. Doing so evaluates only j records for all the steps in the TabularDataset, which makes it fast even against large datasets."
] ]
}, },
{ {
@@ -364,7 +357,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"X_train.get_profile()" "X_train.take(5).to_pandas_dataframe()"
] ]
}, },
{ {
@@ -373,7 +366,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"y_train.get_profile()" "y_train.take(5).to_pandas_dataframe()"
] ]
}, },
{ {
@@ -593,7 +586,10 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"fitted_model.named_steps['datatransformer'].get_featurization_summary()" "# Get the featurization summary as a list of JSON\n",
"featurization_summary = fitted_model.named_steps['datatransformer'].get_featurization_summary()\n",
"# View the featurization summary as a pandas dataframe\n",
"pd.DataFrame.from_records(featurization_summary)"
] ]
}, },
{ {

View File

@@ -331,25 +331,18 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Load Training Data Using DataPrep" "## Load Training Data Using Dataset"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"Automated ML takes a Dataflow as input.\n", "Automated ML takes a `TabularDataset` as input.\n",
"\n", "\n",
"If you are familiar with Pandas and have done your data preparation work in Pandas already, you can use the `read_pandas_dataframe` method in dprep to convert the DataFrame to a Dataflow.\n", "You are free to use the data preparation libraries/tools of your choice to do the require preparation and once you are done, you can write it to a datastore and create a TabularDataset from it.\n",
"```python\n",
"df = pd.read_csv(...)\n",
"# apply some transforms\n",
"dprep.read_pandas_dataframe(df, temp_folder='/path/accessible/by/both/driver/and/worker')\n",
"```\n",
"\n", "\n",
"If you just need to ingest data without doing any preparation, you can directly use AzureML Data Prep (Data Prep) to do so. The code below demonstrates this scenario. Data Prep also has data preparation capabilities, we have many [sample notebooks](https://github.com/Microsoft/AMLDataPrepDocs) demonstrating the capabilities.\n", "You will get the datastore you registered previously and pass it to Dataset for reading. The data comes from the digits dataset: `sklearn.datasets.load_digits()`. `DataPath` points to a specific location within a datastore. "
"\n",
"You will get the datastore you registered previously and pass it to Data Prep for reading. The data comes from the digits dataset: `sklearn.datasets.load_digits()`. `DataPath` points to a specific location within a datastore. "
] ]
}, },
{ {
@@ -358,21 +351,21 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"import azureml.dataprep as dprep\n", "from azureml.core.dataset import Dataset\n",
"from azureml.data.datapath import DataPath\n", "from azureml.data.datapath import DataPath\n",
"\n", "\n",
"datastore = Datastore.get(workspace = ws, datastore_name = datastore_name)\n", "datastore = Datastore.get(workspace = ws, datastore_name = datastore_name)\n",
"\n", "\n",
"X_train = dprep.read_csv(datastore.path('X.csv'))\n", "X_train = Dataset.Tabular.from_delimited_files(datastore.path('X.csv'))\n",
"y_train = dprep.read_csv(datastore.path('y.csv')).to_long(dprep.ColumnSelector(term='.*', use_regex = True))" "y_train = Dataset.Tabular.from_delimited_files(datastore.path('y.csv'))"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Review the Data Preparation Result\n", "## Review the TabularDataset\n",
"You can peek the result of a Dataflow at any range using skip(i) and head(j). Doing so evaluates only j records for all the steps in the Dataflow, which makes it fast even against large datasets." "You can peek the result of a TabularDataset at any range using `skip(i)` and `take(j).to_pandas_dataframe()`. Doing so evaluates only j records for all the steps in the TabularDataset, which makes it fast even against large datasets."
] ]
}, },
{ {
@@ -381,7 +374,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"X_train.get_profile()" "X_train.take(5).to_pandas_dataframe()"
] ]
}, },
{ {
@@ -390,7 +383,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"y_train.get_profile()" "y_train.take(5).to_pandas_dataframe()"
] ]
}, },
{ {

View File

@@ -13,7 +13,7 @@
"metadata": {}, "metadata": {},
"source": [ "source": [
"# Using Databricks as a Compute Target from Azure Machine Learning Pipeline\n", "# Using Databricks as a Compute Target from Azure Machine Learning Pipeline\n",
"To use Databricks as a compute target from [Azure Machine Learning Pipeline](https://docs.microsoft.com/en-us/azure/machine-learning/service/concept-ml-pipelines), a [DatabricksStep](https://docs.microsoft.com/en-us/python/api/azureml-pipeline-steps/azureml.pipeline.steps.databricks_step.databricksstep?view=azure-ml-py) is used. This notebook demonstrates the use of DatabricksStep in Azure Machine Learning Pipeline.\n", "To use Databricks as a compute target from [Azure Machine Learning Pipeline](https://aka.ms/pl-concept), a [DatabricksStep](https://docs.microsoft.com/en-us/python/api/azureml-pipeline-steps/azureml.pipeline.steps.databricks_step.databricksstep?view=azure-ml-py) is used. This notebook demonstrates the use of DatabricksStep in Azure Machine Learning Pipeline.\n",
"\n", "\n",
"The notebook will show:\n", "The notebook will show:\n",
"1. Running an arbitrary Databricks notebook that the customer has in Databricks workspace\n", "1. Running an arbitrary Databricks notebook that the customer has in Databricks workspace\n",
@@ -675,7 +675,7 @@
"metadata": {}, "metadata": {},
"source": [ "source": [
"# Next: ADLA as a Compute Target\n", "# Next: ADLA as a Compute Target\n",
"To use ADLA as a compute target from Azure Machine Learning Pipeline, a AdlaStep is used. This [notebook](./aml-pipelines-use-adla-as-compute-target.ipynb) demonstrates the use of AdlaStep in Azure Machine Learning Pipeline." "To use ADLA as a compute target from Azure Machine Learning Pipeline, a AdlaStep is used. This [notebook](https://aka.ms/pl-adla) demonstrates the use of AdlaStep in Azure Machine Learning Pipeline."
] ]
}, },
{ {

View File

@@ -1,709 +0,0 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Track Data Drift between Training and Inference Data in Production \n",
"\n",
"With this notebook, you will learn how to enable the DataDrift service to automatically track and determine whether your inference data is drifting from the data your model was initially trained on. The DataDrift service provides metrics and visualizations to help stakeholders identify which specific features cause the concept drift to occur.\n",
"\n",
"Please email driftfeedback@microsoft.com with any issues. A member from the DataDrift team will respond shortly. \n",
"\n",
"The DataDrift Public Preview API can be found [here](https://docs.microsoft.com/en-us/python/api/azureml-contrib-datadrift/?view=azure-ml-py). "
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/contrib/datadrift/azureml-datadrift.png)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Prerequisites and Setup"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Install the DataDrift package\n",
"\n",
"Install the azureml-contrib-datadrift, azureml-contrib-opendatasets and lightgbm packages before running this notebook.\n",
"```\n",
"pip install azureml-contrib-datadrift\n",
"pip install azureml-contrib-datasets\n",
"pip install lightgbm\n",
"```"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Import Dependencies"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import json\n",
"import os\n",
"import time\n",
"from datetime import datetime, timedelta\n",
"\n",
"import numpy as np\n",
"import pandas as pd\n",
"import requests\n",
"from azureml.contrib.datadrift import DataDriftDetector, AlertConfiguration\n",
"from azureml.contrib.opendatasets import NoaaIsdWeather\n",
"from azureml.core import Dataset, Workspace, Run\n",
"from azureml.core.compute import AksCompute, ComputeTarget\n",
"from azureml.core.conda_dependencies import CondaDependencies\n",
"from azureml.core.experiment import Experiment\n",
"from azureml.core.image import ContainerImage\n",
"from azureml.core.model import Model\n",
"from azureml.core.webservice import Webservice, AksWebservice\n",
"from azureml.widgets import RunDetails\n",
"from sklearn.externals import joblib\n",
"from sklearn.model_selection import train_test_split\n"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Set up Configuraton and Create Azure ML Workspace\n",
"\n",
"If you are using an Azure Machine Learning Notebook VM, you are all set. Otherwise, go through the [configuration notebook](../../configuration.ipynb) first if you haven't already to establish your connection to the AzureML Workspace."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Please type in your initials/alias. The prefix is prepended to the names of resources created by this notebook. \n",
"prefix = \"dd\"\n",
"\n",
"# NOTE: Please do not change the model_name, as it's required by the score.py file\n",
"model_name = \"driftmodel\"\n",
"image_name = \"{}driftimage\".format(prefix)\n",
"service_name = \"{}driftservice\".format(prefix)\n",
"\n",
"# optionally, set email address to receive an email alert for DataDrift\n",
"email_address = \"\""
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ws = Workspace.from_config()\n",
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep = '\\n')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Generate Train/Testing Data\n",
"\n",
"For this demo, we will use NOAA weather data from [Azure Open Datasets](https://azure.microsoft.com/services/open-datasets/). You may replace this step with your own dataset. "
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"usaf_list = ['725724', '722149', '723090', '722159', '723910', '720279',\n",
" '725513', '725254', '726430', '720381', '723074', '726682',\n",
" '725486', '727883', '723177', '722075', '723086', '724053',\n",
" '725070', '722073', '726060', '725224', '725260', '724520',\n",
" '720305', '724020', '726510', '725126', '722523', '703333',\n",
" '722249', '722728', '725483', '722972', '724975', '742079',\n",
" '727468', '722193', '725624', '722030', '726380', '720309',\n",
" '722071', '720326', '725415', '724504', '725665', '725424',\n",
" '725066']\n",
"\n",
"columns = ['usaf', 'wban', 'datetime', 'latitude', 'longitude', 'elevation', 'windAngle', 'windSpeed', 'temperature', 'stationName', 'p_k']\n",
"\n",
"def enrich_weather_noaa_data(noaa_df):\n",
" hours_in_day = 23\n",
" week_in_year = 52\n",
" \n",
"\n",
" noaa_df = noaa_df.assign(hour=noaa_df[\"datetime\"].dt.hour,\n",
" weekofyear=noaa_df[\"datetime\"].dt.week,\n",
" sine_weekofyear=noaa_df['datetime'].transform(lambda x: np.sin((2*np.pi*x.dt.week-1)/week_in_year)),\n",
" cosine_weekofyear=noaa_df['datetime'].transform(lambda x: np.cos((2*np.pi*x.dt.week-1)/week_in_year)),\n",
" sine_hourofday=noaa_df['datetime'].transform(lambda x: np.sin(2*np.pi*x.dt.hour/hours_in_day)),\n",
" cosine_hourofday=noaa_df['datetime'].transform(lambda x: np.cos(2*np.pi*x.dt.hour/hours_in_day))\n",
" )\n",
" \n",
" return noaa_df\n",
"\n",
"\n",
"def add_window_col(input_df):\n",
" shift_interval = pd.Timedelta('-7 days') # your X days interval\n",
" df_shifted = input_df.copy()\n",
" df_shifted.loc[:,'datetime'] = df_shifted['datetime'] - shift_interval\n",
" df_shifted.drop(list(input_df.columns.difference(['datetime', 'usaf', 'wban', 'sine_hourofday', 'temperature'])), axis=1, inplace=True)\n",
"\n",
" # merge, keeping only observations where -1 lag is present\n",
" df2 = pd.merge(input_df,\n",
" df_shifted,\n",
" on=['datetime', 'usaf', 'wban', 'sine_hourofday'],\n",
" how='inner', # use 'left' to keep observations without lags\n",
" suffixes=['', '-7'])\n",
" return df2\n",
"\n",
"def get_noaa_data(start_time, end_time, cols, station_list):\n",
" isd = NoaaIsdWeather(start_time, end_time, cols=cols)\n",
" # Read into Pandas data frame.\n",
" noaa_df = isd.to_pandas_dataframe()\n",
" noaa_df = noaa_df.rename(columns={\"stationName\": \"station_name\"})\n",
" \n",
" df_filtered = noaa_df[noaa_df[\"usaf\"].isin(station_list)]\n",
" df_filtered.reset_index(drop=True)\n",
" \n",
" # Enrich with time features\n",
" df_enriched = enrich_weather_noaa_data(df_filtered)\n",
" \n",
" return df_enriched\n",
"\n",
"def get_featurized_noaa_df(start_time, end_time, cols, station_list):\n",
" df_1 = get_noaa_data(start_time - timedelta(days=7), start_time - timedelta(seconds=1), cols, station_list)\n",
" df_2 = get_noaa_data(start_time, end_time, cols, station_list)\n",
" noaa_df = pd.concat([df_1, df_2])\n",
" \n",
" print(\"Adding window feature\")\n",
" df_window = add_window_col(noaa_df)\n",
" \n",
" cat_columns = df_window.dtypes == object\n",
" cat_columns = cat_columns[cat_columns == True]\n",
" \n",
" print(\"Encoding categorical columns\")\n",
" df_encoded = pd.get_dummies(df_window, columns=cat_columns.keys().tolist())\n",
" \n",
" print(\"Dropping unnecessary columns\")\n",
" df_featurized = df_encoded.drop(['windAngle', 'windSpeed', 'datetime', 'elevation'], axis=1).dropna().drop_duplicates()\n",
" \n",
" return df_featurized"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Train model on Jan 1 - 14, 2009 data\n",
"df = get_featurized_noaa_df(datetime(2009, 1, 1), datetime(2009, 1, 14, 23, 59, 59), columns, usaf_list)\n",
"df.head()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"label = \"temperature\"\n",
"x_df = df.drop(label, axis=1)\n",
"y_df = df[[label]]\n",
"x_train, x_test, y_train, y_test = train_test_split(df, y_df, test_size=0.2, random_state=223)\n",
"print(x_train.shape, x_test.shape, y_train.shape, y_test.shape)\n",
"\n",
"training_dir = 'outputs/training'\n",
"training_file = \"training.csv\"\n",
"\n",
"# Generate training dataframe to register as Training Dataset\n",
"os.makedirs(training_dir, exist_ok=True)\n",
"training_df = pd.merge(x_train.drop(label, axis=1), y_train, left_index=True, right_index=True)\n",
"training_df.to_csv(training_dir + \"/\" + training_file)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Create/Register Training Dataset"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"dataset_name = \"dataset\"\n",
"name_suffix = datetime.utcnow().strftime(\"%Y-%m-%d-%H-%M-%S\")\n",
"snapshot_name = \"snapshot-{}\".format(name_suffix)\n",
"\n",
"dstore = ws.get_default_datastore()\n",
"dstore.upload(training_dir, \"data/training\", show_progress=True)\n",
"dpath = dstore.path(\"data/training/training.csv\")\n",
"trainingDataset = Dataset.auto_read_files(dpath, include_path=True)\n",
"trainingDataset = trainingDataset.register(workspace=ws, name=dataset_name, description=\"dset\", exist_ok=True)\n",
"\n",
"trainingDataSnapshot = trainingDataset.create_snapshot(snapshot_name=snapshot_name, compute_target=None, create_data_snapshot=True)\n",
"datasets = [(Dataset.Scenario.TRAINING, trainingDataSnapshot)]\n",
"print(\"dataset registration done.\\n\")\n",
"datasets"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Train and Save Model"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import lightgbm as lgb\n",
"\n",
"train = lgb.Dataset(data=x_train, \n",
" label=y_train)\n",
"\n",
"test = lgb.Dataset(data=x_test, \n",
" label=y_test,\n",
" reference=train)\n",
"\n",
"params = {'learning_rate' : 0.1,\n",
" 'boosting' : 'gbdt',\n",
" 'metric' : 'rmse',\n",
" 'feature_fraction' : 1,\n",
" 'bagging_fraction' : 1,\n",
" 'max_depth': 6,\n",
" 'num_leaves' : 31,\n",
" 'objective' : 'regression',\n",
" 'bagging_freq' : 1,\n",
" \"verbose\": -1,\n",
" 'min_data_per_leaf': 100}\n",
"\n",
"model = lgb.train(params, \n",
" num_boost_round=500,\n",
" train_set=train,\n",
" valid_sets=[train, test],\n",
" verbose_eval=50,\n",
" early_stopping_rounds=25)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"model_file = 'outputs/{}.pkl'.format(model_name)\n",
"\n",
"os.makedirs('outputs', exist_ok=True)\n",
"joblib.dump(model, model_file)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Register Model"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"model = Model.register(model_path=model_file,\n",
" model_name=model_name,\n",
" workspace=ws,\n",
" datasets=datasets)\n",
"\n",
"print(model_name, image_name, service_name, model)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Deploy Model To AKS"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": []
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Prepare Environment"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"myenv = CondaDependencies.create(conda_packages=['numpy','scikit-learn', 'joblib', 'lightgbm', 'pandas'],\n",
" pip_packages=['azureml-monitoring', 'azureml-sdk[automl]'])\n",
"\n",
"with open(\"myenv.yml\",\"w\") as f:\n",
" f.write(myenv.serialize_to_string())"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Create Image"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Image creation may take up to 15 minutes.\n",
"\n",
"image_name = image_name + str(model.version)\n",
"\n",
"if not image_name in ws.images:\n",
" # Use the score.py defined in this directory as the execution script\n",
" # NOTE: The Model Data Collector must be enabled in the execution script for DataDrift to run correctly\n",
" image_config = ContainerImage.image_configuration(execution_script=\"score.py\",\n",
" runtime=\"python\",\n",
" conda_file=\"myenv.yml\",\n",
" description=\"Image with weather dataset model\")\n",
" image = ContainerImage.create(name=image_name,\n",
" models=[model],\n",
" image_config=image_config,\n",
" workspace=ws)\n",
"\n",
" image.wait_for_creation(show_output=True)\n",
"else:\n",
" image = ws.images[image_name]"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Create Compute Target"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"aks_name = 'dd-demo-e2e'\n",
"prov_config = AksCompute.provisioning_configuration()\n",
"\n",
"if not aks_name in ws.compute_targets:\n",
" aks_target = ComputeTarget.create(workspace=ws,\n",
" name=aks_name,\n",
" provisioning_configuration=prov_config)\n",
"\n",
" aks_target.wait_for_completion(show_output=True)\n",
" print(aks_target.provisioning_state)\n",
" print(aks_target.provisioning_errors)\n",
"else:\n",
" aks_target=ws.compute_targets[aks_name]"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Deploy Service"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"aks_service_name = service_name\n",
"\n",
"if not aks_service_name in ws.webservices:\n",
" aks_config = AksWebservice.deploy_configuration(collect_model_data=True, enable_app_insights=True)\n",
" aks_service = Webservice.deploy_from_image(workspace=ws,\n",
" name=aks_service_name,\n",
" image=image,\n",
" deployment_config=aks_config,\n",
" deployment_target=aks_target)\n",
" aks_service.wait_for_deployment(show_output=True)\n",
" print(aks_service.state)\n",
"else:\n",
" aks_service = ws.webservices[aks_service_name]"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Run DataDrift Analysis"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Send Scoring Data to Service"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Download Scoring Data"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Score Model on March 15, 2016 data\n",
"scoring_df = get_noaa_data(datetime(2016, 3, 15) - timedelta(days=7), datetime(2016, 3, 16), columns, usaf_list)\n",
"# Add the window feature column\n",
"scoring_df = add_window_col(scoring_df)\n",
"\n",
"# Drop features not used by the model\n",
"print(\"Dropping unnecessary columns\")\n",
"scoring_df = scoring_df.drop(['windAngle', 'windSpeed', 'datetime', 'elevation'], axis=1).dropna()\n",
"scoring_df.head()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# One Hot Encode the scoring dataset to match the training dataset schema\n",
"columns_dict = model.datasets[\"training\"][0].get_profile().columns\n",
"extra_cols = ('Path', 'Column1')\n",
"for k in extra_cols:\n",
" columns_dict.pop(k, None)\n",
"training_columns = list(columns_dict.keys())\n",
"\n",
"categorical_columns = scoring_df.dtypes == object\n",
"categorical_columns = categorical_columns[categorical_columns == True]\n",
"\n",
"test_df = pd.get_dummies(scoring_df[categorical_columns.keys().tolist()])\n",
"encoded_df = scoring_df.join(test_df)\n",
"\n",
"# Populate missing OHE columns with 0 values to match traning dataset schema\n",
"difference = list(set(training_columns) - set(encoded_df.columns.tolist()))\n",
"for col in difference:\n",
" encoded_df[col] = 0\n",
"encoded_df.head()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Serialize dataframe to list of row dictionaries\n",
"encoded_dict = encoded_df.to_dict('records')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Submit Scoring Data to Service"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"%%time\n",
"\n",
"# retreive the API keys. AML generates two keys.\n",
"key1, key2 = aks_service.get_keys()\n",
"\n",
"total_count = len(scoring_df)\n",
"i = 0\n",
"load = []\n",
"for row in encoded_dict:\n",
" load.append(row)\n",
" i = i + 1\n",
" if i % 100 == 0:\n",
" payload = json.dumps({\"data\": load})\n",
" \n",
" # construct raw HTTP request and send to the service\n",
" payload_binary = bytes(payload,encoding = 'utf8')\n",
" headers = {'Content-Type':'application/json', 'Authorization': 'Bearer ' + key1}\n",
" resp = requests.post(aks_service.scoring_uri, payload_binary, headers=headers)\n",
" \n",
" print(\"prediction:\", resp.content, \"Progress: {}/{}\".format(i, total_count)) \n",
"\n",
" load = []\n",
" time.sleep(3)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Configure DataDrift"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"services = [service_name]\n",
"start = datetime.now() - timedelta(days=2)\n",
"end = datetime(year=2020, month=1, day=22, hour=15, minute=16)\n",
"feature_list = ['usaf', 'wban', 'latitude', 'longitude', 'station_name', 'p_k', 'sine_hourofday', 'cosine_hourofday', 'temperature-7']\n",
"alert_config = AlertConfiguration([email_address]) if email_address else None\n",
"\n",
"# there will be an exception indicating using get() method if DataDrift object already exist\n",
"try:\n",
" datadrift = DataDriftDetector.create(ws, model.name, model.version, services, frequency=\"Day\", alert_config=alert_config)\n",
"except KeyError:\n",
" datadrift = DataDriftDetector.get(ws, model.name, model.version)\n",
" \n",
"print(\"Details of DataDrift Object:\\n{}\".format(datadrift))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Run an Adhoc DataDriftDetector Run"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"target_date = datetime.today()\n",
"run = datadrift.run(target_date, services, feature_list=feature_list, create_compute_target=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"exp = Experiment(ws, datadrift._id)\n",
"dd_run = Run(experiment=exp, run_id=run)\n",
"RunDetails(dd_run).show()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Get Drift Analysis Results"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"children = list(dd_run.get_children())\n",
"for child in children:\n",
" child.wait_for_completion()\n",
"\n",
"drift_metrics = datadrift.get_output(start_time=start, end_time=end)\n",
"drift_metrics"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Show all drift figures, one per serivice.\n",
"# If setting with_details is False (by default), only drift will be shown; if it's True, all details will be shown.\n",
"\n",
"drift_figures = datadrift.show(with_details=True)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Enable DataDrift Schedule"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"datadrift.enable_schedule()"
]
}
],
"metadata": {
"authors": [
{
"name": "rafarmah"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.6"
}
},
"nbformat": 4,
"nbformat_minor": 2
}

View File

@@ -1,3 +0,0 @@
## Using data drift APIs
1. [Detect data drift for a model](azure-ml-datadrift.ipynb): Detect data drift for a deployed model.

View File

@@ -1,58 +0,0 @@
import pickle
import json
import numpy
import azureml.train.automl
from sklearn.externals import joblib
from sklearn.linear_model import Ridge
from azureml.core.model import Model
from azureml.core.run import Run
from azureml.monitoring import ModelDataCollector
import time
import pandas as pd
def init():
global model, inputs_dc, prediction_dc, feature_names, categorical_features
print("Model is initialized" + time.strftime("%H:%M:%S"))
model_path = Model.get_model_path(model_name="driftmodel")
model = joblib.load(model_path)
feature_names = ["usaf", "wban", "latitude", "longitude", "station_name", "p_k",
"sine_weekofyear", "cosine_weekofyear", "sine_hourofday", "cosine_hourofday",
"temperature-7"]
categorical_features = ["usaf", "wban", "p_k", "station_name"]
inputs_dc = ModelDataCollector(model_name="driftmodel",
identifier="inputs",
feature_names=feature_names)
prediction_dc = ModelDataCollector("driftmodel",
identifier="predictions",
feature_names=["temperature"])
def run(raw_data):
global inputs_dc, prediction_dc
try:
data = json.loads(raw_data)["data"]
data = pd.DataFrame(data)
# Remove the categorical features as the model expects OHE values
input_data = data.drop(categorical_features, axis=1)
result = model.predict(input_data)
# Collect the non-OHE dataframe
collected_df = data[feature_names]
inputs_dc.collect(collected_df.values)
prediction_dc.collect(result)
return result.tolist()
except Exception as e:
error = str(e)
print(error + time.strftime("%H:%M:%S"))
return error

View File

@@ -77,7 +77,7 @@
"from azureml.core import Workspace\n", "from azureml.core import Workspace\n",
"\n", "\n",
"ws = Workspace.from_config()\n", "ws = Workspace.from_config()\n",
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep = '\\n')" "print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep='\\n')"
] ]
}, },
{ {
@@ -108,11 +108,41 @@
"source": [ "source": [
"from azureml.core.model import Model\n", "from azureml.core.model import Model\n",
"\n", "\n",
"model = Model.register(model_path = \"sklearn_regression_model.pkl\",\n", "model = Model.register(model_path=\"sklearn_regression_model.pkl\",\n",
" model_name = \"sklearn_regression_model.pkl\",\n", " model_name=\"sklearn_regression_model.pkl\",\n",
" tags = {'area': \"diabetes\", 'type': \"regression\"},\n", " tags={'area': \"diabetes\", 'type': \"regression\"},\n",
" description = \"Ridge regression model to predict diabetes\",\n", " description=\"Ridge regression model to predict diabetes\",\n",
" workspace = ws)" " workspace=ws)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Create Environment"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"You can now create and/or use an Environment object when deploying a Webservice. The Environment can have been previously registered with your Workspace, or it will be registered with it as a part of the Webservice deployment. Only Environments that were created using azureml-defaults version 1.0.48 or later will work with this new handling however.\n",
"\n",
"More information can be found in our [using environments notebook](../training/using-environments/using-environments.ipynb)."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Environment\n",
"\n",
"env = Environment.from_conda_specification(name='deploytocloudenv', file_path='myenv.yml')\n",
"\n",
"# This is optional at this point\n",
"# env.register(workspace=ws)"
] ]
}, },
{ {
@@ -153,10 +183,7 @@
"source": [ "source": [
"from azureml.core.model import InferenceConfig\n", "from azureml.core.model import InferenceConfig\n",
"\n", "\n",
"inference_config = InferenceConfig(runtime= \"python\", \n", "inference_config = InferenceConfig(entry_script=\"score.py\", environment=env)"
" entry_script=\"score.py\",\n",
" conda_file=\"myenv.yml\", \n",
" extra_docker_file_steps=\"helloworld.txt\")"
] ]
}, },
{ {
@@ -177,7 +204,7 @@
"from azureml.core.webservice import AciWebservice, Webservice\n", "from azureml.core.webservice import AciWebservice, Webservice\n",
"from azureml.exceptions import WebserviceException\n", "from azureml.exceptions import WebserviceException\n",
"\n", "\n",
"deployment_config = AciWebservice.deploy_configuration(cpu_cores = 1, memory_gb = 1)\n", "deployment_config = AciWebservice.deploy_configuration(cpu_cores=1, memory_gb=1)\n",
"aci_service_name = 'aciservice1'\n", "aci_service_name = 'aciservice1'\n",
"\n", "\n",
"try:\n", "try:\n",
@@ -215,7 +242,7 @@
" [10,9,8,7,6,5,4,3,2,1]\n", " [10,9,8,7,6,5,4,3,2,1]\n",
"]})\n", "]})\n",
"\n", "\n",
"test_sample_encoded = bytes(test_sample,encoding = 'utf8')\n", "test_sample_encoded = bytes(test_sample, encoding='utf8')\n",
"prediction = service.run(input_data=test_sample_encoded)\n", "prediction = service.run(input_data=test_sample_encoded)\n",
"print(prediction)" "print(prediction)"
] ]
@@ -247,15 +274,38 @@
"source": [ "source": [
"### Model Profiling\n", "### Model Profiling\n",
"\n", "\n",
"you can also take advantage of profiling feature for model\n", "You can also take advantage of the profiling feature to estimate CPU and memory requirements for models.\n",
"\n", "\n",
"```python\n", "```python\n",
"\n", "profile = Model.profile(ws, \"profilename\", [model], inference_config, test_sample)\n",
"profile = model.profile(ws, \"profilename\", [model], inference_config, test_sample)\n",
"profile.wait_for_profiling(True)\n", "profile.wait_for_profiling(True)\n",
"profiling_results = profile.get_results()\n", "profiling_results = profile.get_results()\n",
"print(profiling_results)\n", "print(profiling_results)\n",
"```"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Model Packaging\n",
"\n", "\n",
"If you want to build a Docker image that encapsulates your model and its dependencies, you can use the model packaging option. The output image will be pushed to your workspace's ACR.\n",
"\n",
"You must include an Environment object in your inference configuration to use `Model.package()`.\n",
"\n",
"```python\n",
"package = Model.package(ws, [model], inference_config)\n",
"package.wait_for_creation(show_output=True) # Or show_output=False to hide the Docker build logs.\n",
"package.pull()\n",
"```\n",
"\n",
"Instead of a fully-built image, you can also generate a Dockerfile and download all the assets needed to build an image on top of your Environment.\n",
"\n",
"```python\n",
"package = Model.package(ws, [model], inference_config, generate_dockerfile=True)\n",
"package.wait_for_creation(show_output=True)\n",
"package.save(\"./local_context_dir\")\n",
"```" "```"
] ]
} }

View File

@@ -0,0 +1,4 @@
name: model-register-and-deploy
dependencies:
- pip:
- azureml-sdk

View File

@@ -72,7 +72,7 @@
"from azureml.core import Workspace\n", "from azureml.core import Workspace\n",
"\n", "\n",
"ws = Workspace.from_config()\n", "ws = Workspace.from_config()\n",
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep = '\\n')" "print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep='\\n')"
] ]
}, },
{ {
@@ -103,11 +103,11 @@
"source": [ "source": [
"from azureml.core.model import Model\n", "from azureml.core.model import Model\n",
"\n", "\n",
"model = Model.register(model_path = \"sklearn_regression_model.pkl\",\n", "model = Model.register(model_path=\"sklearn_regression_model.pkl\",\n",
" model_name = \"sklearn_regression_model.pkl\",\n", " model_name=\"sklearn_regression_model.pkl\",\n",
" tags = {'area': \"diabetes\", 'type': \"regression\"},\n", " tags={'area': \"diabetes\", 'type': \"regression\"},\n",
" description = \"Ridge regression model to predict diabetes\",\n", " description=\"Ridge regression model to predict diabetes\",\n",
" workspace = ws)" " workspace=ws)"
] ]
}, },
{ {
@@ -127,10 +127,10 @@
"\n", "\n",
"source_directory = \"C:/abc\"\n", "source_directory = \"C:/abc\"\n",
"\n", "\n",
"os.makedirs(source_directory, exist_ok = True)\n", "os.makedirs(source_directory, exist_ok=True)\n",
"os.makedirs(\"C:/abc/x/y\", exist_ok = True)\n", "os.makedirs(\"C:/abc/x/y\", exist_ok=True)\n",
"os.makedirs(\"C:/abc/env\", exist_ok = True)\n", "os.makedirs(\"C:/abc/env\", exist_ok=True)\n",
"os.makedirs(\"C:/abc/dockerstep\", exist_ok = True)" "os.makedirs(\"C:/abc/dockerstep\", exist_ok=True)"
] ]
}, },
{ {
@@ -253,7 +253,7 @@
"from azureml.core.model import InferenceConfig\n", "from azureml.core.model import InferenceConfig\n",
"\n", "\n",
"inference_config = InferenceConfig(source_directory=\"C:/abc\",\n", "inference_config = InferenceConfig(source_directory=\"C:/abc\",\n",
" runtime= \"python\", \n", " runtime=\"python\", \n",
" entry_script=\"x/y/score.py\",\n", " entry_script=\"x/y/score.py\",\n",
" conda_file=\"env/myenv.yml\", \n", " conda_file=\"env/myenv.yml\", \n",
" extra_docker_file_steps=\"dockerstep/customDockerStep.txt\")" " extra_docker_file_steps=\"dockerstep/customDockerStep.txt\")"
@@ -271,15 +271,10 @@
"\n", "\n",
"NOTE:\n", "NOTE:\n",
"\n", "\n",
"we require docker running with linux container. If you are running Docker for Windows, you need to ensure the Linux Engine is running\n", "The Docker image runs as a Linux container. If you are running Docker for Windows, you need to ensure the Linux Engine is running:\n",
"\n", "\n",
" powershell command to switch to linux engine\n", " # PowerShell command to switch to Linux engine\n",
" & 'C:\\Program Files\\Docker\\Docker\\DockerCli.exe' -SwitchLinuxEngine\n", " & 'C:\\Program Files\\Docker\\Docker\\DockerCli.exe' -SwitchLinuxEngine"
"\n",
"and c drive is shared https://docs.docker.com/docker-for-windows/#shared-drives\n",
"sometimes you have to reshare c drive as docker \n",
"\n",
"<img src=\"./dockerSharedDrive.JPG\" align=\"left\"/>"
] ]
}, },
{ {
@@ -295,7 +290,7 @@
"source": [ "source": [
"from azureml.core.webservice import LocalWebservice\n", "from azureml.core.webservice import LocalWebservice\n",
"\n", "\n",
"#this is optional, if not provided we choose random port\n", "# This is optional, if not provided Docker will choose a random unused port.\n",
"deployment_config = LocalWebservice.deploy_configuration(port=6789)\n", "deployment_config = LocalWebservice.deploy_configuration(port=6789)\n",
"\n", "\n",
"local_service = Model.deploy(ws, \"test\", [model], inference_config, deployment_config)\n", "local_service = Model.deploy(ws, \"test\", [model], inference_config, deployment_config)\n",
@@ -427,9 +422,8 @@
"local_service.reload()\n", "local_service.reload()\n",
"print(\"--------------------------------------------------------------\")\n", "print(\"--------------------------------------------------------------\")\n",
"\n", "\n",
"# after reload now if you call run this will return updated return message\n", "# After calling reload(), run() will return the updated message.\n",
"\n", "local_service.run(input_data=sample_input)"
"print(local_service.run(input_data=sample_input))"
] ]
}, },
{ {
@@ -442,9 +436,9 @@
"\n", "\n",
"```python\n", "```python\n",
"\n", "\n",
"local_service.update(models = [SomeOtherModelObject],\n", "local_service.update(models=[SomeOtherModelObject],\n",
" deployment_config = local_config,\n", " deployment_config=local_config,\n",
" inference_config = inference_config)\n", " inference_config=inference_config)\n",
"```" "```"
] ]
}, },
@@ -468,7 +462,7 @@
"metadata": { "metadata": {
"authors": [ "authors": [
{ {
"name": "raymondl" "name": "keriehm"
} }
], ],
"kernelspec": { "kernelspec": {

View File

@@ -68,7 +68,7 @@
"from azureml.core import Workspace\n", "from azureml.core import Workspace\n",
"\n", "\n",
"ws = Workspace.from_config()\n", "ws = Workspace.from_config()\n",
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep = '\\n')" "print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep='\\n')"
] ]
}, },
{ {
@@ -99,11 +99,31 @@
"source": [ "source": [
"from azureml.core.model import Model\n", "from azureml.core.model import Model\n",
"\n", "\n",
"model = Model.register(model_path = \"sklearn_regression_model.pkl\",\n", "model = Model.register(model_path=\"sklearn_regression_model.pkl\",\n",
" model_name = \"sklearn_regression_model.pkl\",\n", " model_name=\"sklearn_regression_model.pkl\",\n",
" tags = {'area': \"diabetes\", 'type': \"regression\"},\n", " tags={'area': \"diabetes\", 'type': \"regression\"},\n",
" description = \"Ridge regression model to predict diabetes\",\n", " description=\"Ridge regression model to predict diabetes\",\n",
" workspace = ws)" " workspace=ws)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Create Environment"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.conda_dependencies import CondaDependencies\n",
"from azureml.core.environment import Environment\n",
"\n",
"environment = Environment(\"LocalDeploy\")\n",
"environment.python.conda_dependencies = CondaDependencies(\"myenv.yml\")"
] ]
}, },
{ {
@@ -121,9 +141,8 @@
"source": [ "source": [
"from azureml.core.model import InferenceConfig\n", "from azureml.core.model import InferenceConfig\n",
"\n", "\n",
"inference_config = InferenceConfig(runtime= \"python\", \n", "inference_config = InferenceConfig(entry_script=\"score.py\",\n",
" entry_script=\"score.py\",\n", " environment=environment)"
" conda_file=\"myenv.yml\")"
] ]
}, },
{ {
@@ -138,15 +157,10 @@
"\n", "\n",
"NOTE:\n", "NOTE:\n",
"\n", "\n",
"we require docker running with linux container. If you are running Docker for Windows, you need to ensure the Linux Engine is running\n", "The Docker image runs as a Linux container. If you are running Docker for Windows, you need to ensure the Linux Engine is running:\n",
"\n", "\n",
" powershell command to switch to linux engine\n", " # PowerShell command to switch to Linux engine\n",
" & 'C:\\Program Files\\Docker\\Docker\\DockerCli.exe' -SwitchLinuxEngine\n", " & 'C:\\Program Files\\Docker\\Docker\\DockerCli.exe' -SwitchLinuxEngine"
"\n",
"and c drive is shared https://docs.docker.com/docker-for-windows/#shared-drives\n",
"sometimes you have to reshare c drive as docker \n",
"\n",
"<img src=\"./dockerSharedDrive.JPG\" align=\"left\"/>"
] ]
}, },
{ {
@@ -157,7 +171,7 @@
"source": [ "source": [
"from azureml.core.webservice import LocalWebservice\n", "from azureml.core.webservice import LocalWebservice\n",
"\n", "\n",
"#this is optional, if not provided we choose random port\n", "# This is optional, if not provided Docker will choose a random unused port.\n",
"deployment_config = LocalWebservice.deploy_configuration(port=6789)\n", "deployment_config = LocalWebservice.deploy_configuration(port=6789)\n",
"\n", "\n",
"local_service = Model.deploy(ws, \"test\", [model], inference_config, deployment_config)\n", "local_service = Model.deploy(ws, \"test\", [model], inference_config, deployment_config)\n",
@@ -221,7 +235,7 @@
"\n", "\n",
"sample_input = bytes(sample_input, encoding='utf-8')\n", "sample_input = bytes(sample_input, encoding='utf-8')\n",
"\n", "\n",
"print(local_service.run(input_data=sample_input))" "local_service.run(input_data=sample_input)"
] ]
}, },
{ {
@@ -282,9 +296,8 @@
"local_service.reload()\n", "local_service.reload()\n",
"print(\"--------------------------------------------------------------\")\n", "print(\"--------------------------------------------------------------\")\n",
"\n", "\n",
"# after reload now if you call run this will return updated return message\n", "# After calling reload(), run() will return the updated message.\n",
"\n", "local_service.run(input_data=sample_input)"
"print(local_service.run(input_data=sample_input))"
] ]
}, },
{ {
@@ -296,10 +309,9 @@
"If you want to change your model(s), Conda dependencies, or deployment configuration, call `update()` to rebuild the Docker image.\n", "If you want to change your model(s), Conda dependencies, or deployment configuration, call `update()` to rebuild the Docker image.\n",
"\n", "\n",
"```python\n", "```python\n",
"\n", "local_service.update(models=[SomeOtherModelObject],\n",
"local_service.update(models = [SomeOtherModelObject],\n", " inference_config=inference_config,\n",
" deployment_config = local_config,\n", " deployment_config=local_config)\n",
" inference_config = inference_config)\n",
"```" "```"
] ]
}, },
@@ -323,7 +335,7 @@
"metadata": { "metadata": {
"authors": [ "authors": [
{ {
"name": "raymondl" "name": "keriehm"
} }
], ],
"kernelspec": { "kernelspec": {

View File

@@ -12,7 +12,7 @@ Easily create and train a model using various deep neural networks (DNNs) as a f
To learn more about the azureml-accel-model classes, see the section [Model Classes](#model-classes) below or the [Azure ML Accel Models SDK documentation](https://docs.microsoft.com/en-us/python/api/azureml-accel-models/azureml.accel?view=azure-ml-py). To learn more about the azureml-accel-model classes, see the section [Model Classes](#model-classes) below or the [Azure ML Accel Models SDK documentation](https://docs.microsoft.com/en-us/python/api/azureml-accel-models/azureml.accel?view=azure-ml-py).
### Step 1: Create an Azure ML workspace ### Step 1: Create an Azure ML workspace
Follow [these instructions](https://docs.microsoft.com/en-us/azure/machine-learning/service/quickstart-create-workspace-with-python) to install the Azure ML SDK on your local machine, create an Azure ML workspace, and set up your notebook environment, which is required for the next step. Follow [these instructions](https://docs.microsoft.com/en-us/azure/machine-learning/service/setup-create-workspace) to install the Azure ML SDK on your local machine, create an Azure ML workspace, and set up your notebook environment, which is required for the next step.
### Step 2: Check your FPGA quota ### Step 2: Check your FPGA quota
Use the Azure CLI to check whether you have quota. Use the Azure CLI to check whether you have quota.

View File

@@ -1,5 +1,12 @@
{ {
"cells": [ "cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/deployment/accelerated-models/accelerated-models-object-detection.png)"
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
@@ -230,11 +237,14 @@
"\n", "\n",
"# Convert model\n", "# Convert model\n",
"convert_request = AccelOnnxConverter.convert_tf_model(ws, registered_model, input_tensors, output_tensors_str)\n", "convert_request = AccelOnnxConverter.convert_tf_model(ws, registered_model, input_tensors, output_tensors_str)\n",
"# If it fails, you can run wait_for_completion again with show_output=True.\n", "if convert_request.wait_for_completion(show_output = False):\n",
"convert_request.wait_for_completion(show_output=False)\n", " # If the above call succeeded, get the converted model\n",
"converted_model = convert_request.result\n", " converted_model = convert_request.result\n",
"print(\"\\nSuccessfully converted: \", converted_model.name, converted_model.url, converted_model.version, \n", " print(\"\\nSuccessfully converted: \", converted_model.name, converted_model.url, converted_model.version, \n",
" converted_model.id, converted_model.created_time, '\\n')\n", " converted_model.id, converted_model.created_time, '\\n')\n",
"else:\n",
" print(\"Model conversion failed. Showing output.\")\n",
" convert_request.wait_for_completion(show_output = True)\n",
"\n", "\n",
"# Package into AccelContainerImage\n", "# Package into AccelContainerImage\n",
"image_config = AccelContainerImage.image_configuration()\n", "image_config = AccelContainerImage.image_configuration()\n",
@@ -298,6 +308,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"%%time\n",
"aks_target.wait_for_completion(show_output = True)\n", "aks_target.wait_for_completion(show_output = True)\n",
"print(aks_target.provisioning_state)\n", "print(aks_target.provisioning_state)\n",
"print(aks_target.provisioning_errors)" "print(aks_target.provisioning_errors)"
@@ -316,6 +327,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"%%time\n",
"from azureml.core.webservice import Webservice, AksWebservice\n", "from azureml.core.webservice import Webservice, AksWebservice\n",
"\n", "\n",
"# Set the web service configuration (for creating a test service, we don't want autoscale enabled)\n", "# Set the web service configuration (for creating a test service, we don't want autoscale enabled)\n",
@@ -324,7 +336,7 @@
" num_replicas=1,\n", " num_replicas=1,\n",
" auth_enabled = False)\n", " auth_enabled = False)\n",
"\n", "\n",
"aks_service_name ='my-aks-service'\n", "aks_service_name ='my-aks-service-3'\n",
"\n", "\n",
"aks_service = Webservice.deploy_from_image(workspace = ws,\n", "aks_service = Webservice.deploy_from_image(workspace = ws,\n",
" name = aks_service_name,\n", " name = aks_service_name,\n",
@@ -342,10 +354,9 @@
"## 5. Test the service\n", "## 5. Test the service\n",
"<a id=\"create-client\"></a>\n", "<a id=\"create-client\"></a>\n",
"### 5.a. Create Client\n", "### 5.a. Create Client\n",
"The image supports gRPC and the TensorFlow Serving \"predict\" API. We have a client that can call into the docker image to get predictions. \n", "The image supports gRPC and the TensorFlow Serving \"predict\" API. We will create a PredictionClient from the Webservice object that can call into the docker image to get predictions. If you do not have the Webservice object, you can also create [PredictionClient](https://docs.microsoft.com/en-us/python/api/azureml-accel-models/azureml.accel.predictionclient?view=azure-ml-py) directly.\n",
"\n",
"**Note:** If you chose to use auth_enabled=True when creating your AksWebservice.deploy_configuration(), see documentation [here](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.webservice(class)?view=azure-ml-py#get-keys--) on how to retrieve your keys and use either key as an argument to PredictionClient(...,access_token=key).",
"\n", "\n",
"**Note:** If you chose to use auth_enabled=True when creating your AksWebservice.deploy_configuration(), see documentation [here](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.webservice(class)?view=azure-ml-py#get-keys--) on how to retrieve your keys and use either key as an argument to PredictionClient(...,access_token=key).\n",
"**WARNING:** If you are running on Azure Notebooks free compute, you will not be able to make outgoing calls to your service. Try locating your client on a different machine to consume it." "**WARNING:** If you are running on Azure Notebooks free compute, you will not be able to make outgoing calls to your service. Try locating your client on a different machine to consume it."
] ]
}, },
@@ -356,18 +367,10 @@
"outputs": [], "outputs": [],
"source": [ "source": [
"# Using the grpc client in AzureML Accelerated Models SDK\n", "# Using the grpc client in AzureML Accelerated Models SDK\n",
"from azureml.accel.client import PredictionClient\n", "from azureml.accel import client_from_service\n",
"\n",
"address = aks_service.scoring_uri\n",
"ssl_enabled = address.startswith(\"https\")\n",
"address = address[address.find('/')+2:].strip('/')\n",
"port = 443 if ssl_enabled else 80\n",
"\n", "\n",
"# Initialize AzureML Accelerated Models client\n", "# Initialize AzureML Accelerated Models client\n",
"client = PredictionClient(address=address,\n", "client = client_from_service(aks_service)"
" port=port,\n",
" use_ssl=ssl_enabled,\n",
" service_name=aks_service.name)"
] ]
}, },
{ {
@@ -486,7 +489,7 @@
"name": "python", "name": "python",
"nbconvert_exporter": "python", "nbconvert_exporter": "python",
"pygments_lexer": "ipython3", "pygments_lexer": "ipython3",
"version": "3.6.0" "version": "3.5.6"
} }
}, },
"nbformat": 4, "nbformat": 4,

View File

@@ -0,0 +1,8 @@
name: accelerated-models-object-detection
dependencies:
- pip:
- azureml-sdk
- azureml-accel-models
- tensorflow
- opencv-python
- matplotlib

View File

@@ -1,5 +1,12 @@
{ {
"cells": [ "cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/deployment/accelerated-models/accelerated-models-quickstart.png)"
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
@@ -270,12 +277,15 @@
"from azureml.accel import AccelOnnxConverter\n", "from azureml.accel import AccelOnnxConverter\n",
"\n", "\n",
"convert_request = AccelOnnxConverter.convert_tf_model(ws, registered_model, input_tensors, output_tensors)\n", "convert_request = AccelOnnxConverter.convert_tf_model(ws, registered_model, input_tensors, output_tensors)\n",
"# If it fails, you can run wait_for_completion again with show_output=True.\n", "\n",
"convert_request.wait_for_completion(show_output = False)\n", "if convert_request.wait_for_completion(show_output = False):\n",
"# If the above call succeeded, get the converted model\n", " # If the above call succeeded, get the converted model\n",
"converted_model = convert_request.result\n", " converted_model = convert_request.result\n",
"print(\"\\nSuccessfully converted: \", converted_model.name, converted_model.url, converted_model.version, \n", " print(\"\\nSuccessfully converted: \", converted_model.name, converted_model.url, converted_model.version, \n",
" converted_model.id, converted_model.created_time, '\\n')" " converted_model.id, converted_model.created_time, '\\n')\n",
"else:\n",
" print(\"Model conversion failed. Showing output.\")\n",
" convert_request.wait_for_completion(show_output = True)"
] ]
}, },
{ {
@@ -366,6 +376,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"%%time\n",
"aks_target.wait_for_completion(show_output = True)\n", "aks_target.wait_for_completion(show_output = True)\n",
"print(aks_target.provisioning_state)\n", "print(aks_target.provisioning_state)\n",
"print(aks_target.provisioning_errors)" "print(aks_target.provisioning_errors)"
@@ -384,15 +395,16 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"%%time\n",
"from azureml.core.webservice import Webservice, AksWebservice\n", "from azureml.core.webservice import Webservice, AksWebservice\n",
"\n", "\n",
"#Set the web service configuration (for creating a test service, we don't want autoscale enabled)\n", "# Set the web service configuration (for creating a test service, we don't want autoscale enabled)\n",
"# Authentication is enabled by default, but for testing we specify False\n", "# Authentication is enabled by default, but for testing we specify False\n",
"aks_config = AksWebservice.deploy_configuration(autoscale_enabled=False,\n", "aks_config = AksWebservice.deploy_configuration(autoscale_enabled=False,\n",
" num_replicas=1,\n", " num_replicas=1,\n",
" auth_enabled = False)\n", " auth_enabled = False)\n",
"\n", "\n",
"aks_service_name ='my-aks-service'\n", "aks_service_name ='my-aks-service-1'\n",
"\n", "\n",
"aks_service = Webservice.deploy_from_image(workspace = ws,\n", "aks_service = Webservice.deploy_from_image(workspace = ws,\n",
" name = aks_service_name,\n", " name = aks_service_name,\n",
@@ -415,10 +427,9 @@
"metadata": {}, "metadata": {},
"source": [ "source": [
"### 7.a. Create Client\n", "### 7.a. Create Client\n",
"The image supports gRPC and the TensorFlow Serving \"predict\" API. We have a client that can call into the docker image to get predictions.\n", "The image supports gRPC and the TensorFlow Serving \"predict\" API. We will create a PredictionClient from the Webservice object that can call into the docker image to get predictions. If you do not have the Webservice object, you can also create [PredictionClient](https://docs.microsoft.com/en-us/python/api/azureml-accel-models/azureml.accel.predictionclient?view=azure-ml-py) directly.\n",
"\n",
"**Note:** If you chose to use auth_enabled=True when creating your AksWebservice, see documentation [here](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.webservice(class)?view=azure-ml-py#get-keys--) on how to retrieve your keys and use either key as an argument to PredictionClient(...,access_token=key).",
"\n", "\n",
"**Note:** If you chose to use auth_enabled=True when creating your AksWebservice, see documentation [here](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.webservice(class)?view=azure-ml-py#get-keys--) on how to retrieve your keys and use either key as an argument to PredictionClient(...,access_token=key).\n",
"**WARNING:** If you are running on Azure Notebooks free compute, you will not be able to make outgoing calls to your service. Try locating your client on a different machine to consume it." "**WARNING:** If you are running on Azure Notebooks free compute, you will not be able to make outgoing calls to your service. Try locating your client on a different machine to consume it."
] ]
}, },
@@ -429,18 +440,10 @@
"outputs": [], "outputs": [],
"source": [ "source": [
"# Using the grpc client in AzureML Accelerated Models SDK\n", "# Using the grpc client in AzureML Accelerated Models SDK\n",
"from azureml.accel.client import PredictionClient\n", "from azureml.accel import client_from_service\n",
"\n",
"address = aks_service.scoring_uri\n",
"ssl_enabled = address.startswith(\"https\")\n",
"address = address[address.find('/')+2:].strip('/')\n",
"port = 443 if ssl_enabled else 80\n",
"\n", "\n",
"# Initialize AzureML Accelerated Models client\n", "# Initialize AzureML Accelerated Models client\n",
"client = PredictionClient(address=address,\n", "client = client_from_service(aks_service)"
" port=port,\n",
" use_ssl=ssl_enabled,\n",
" service_name=aks_service.name)"
] ]
}, },
{ {
@@ -540,7 +543,7 @@
"name": "python", "name": "python",
"nbconvert_exporter": "python", "nbconvert_exporter": "python",
"pygments_lexer": "ipython3", "pygments_lexer": "ipython3",
"version": "3.6.0" "version": "3.5.6"
} }
}, },
"nbformat": 4, "nbformat": 4,

View File

@@ -0,0 +1,6 @@
name: accelerated-models-quickstart
dependencies:
- pip:
- azureml-sdk
- azureml-accel-models
- tensorflow

View File

@@ -1,5 +1,12 @@
{ {
"cells": [ "cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/deployment/accelerated-models/accelerated-models-training.png)"
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
@@ -410,6 +417,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"%%time\n",
"# Launch the training\n", "# Launch the training\n",
"tf.reset_default_graph()\n", "tf.reset_default_graph()\n",
"sess = tf.Session(graph=tf.get_default_graph())\n", "sess = tf.Session(graph=tf.get_default_graph())\n",
@@ -582,11 +590,14 @@
"\n", "\n",
"# Convert model\n", "# Convert model\n",
"convert_request = AccelOnnxConverter.convert_tf_model(ws, registered_model, input_tensors, output_tensors)\n", "convert_request = AccelOnnxConverter.convert_tf_model(ws, registered_model, input_tensors, output_tensors)\n",
"# If it fails, you can run wait_for_completion again with show_output=True.\n", "if convert_request.wait_for_completion(show_output = False):\n",
"convert_request.wait_for_completion(show_output=False)\n", " # If the above call succeeded, get the converted model\n",
"converted_model = convert_request.result\n", " converted_model = convert_request.result\n",
"print(\"\\nSuccessfully converted: \", converted_model.name, converted_model.url, converted_model.version, \n", " print(\"\\nSuccessfully converted: \", converted_model.name, converted_model.url, converted_model.version, \n",
" converted_model.id, converted_model.created_time, '\\n')\n", " converted_model.id, converted_model.created_time, '\\n')\n",
"else:\n",
" print(\"Model conversion failed. Showing output.\")\n",
" convert_request.wait_for_completion(show_output = True)\n",
"\n", "\n",
"# Package into AccelContainerImage\n", "# Package into AccelContainerImage\n",
"image_config = AccelContainerImage.image_configuration()\n", "image_config = AccelContainerImage.image_configuration()\n",
@@ -655,6 +666,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"%%time\n",
"aks_target.wait_for_completion(show_output = True)\n", "aks_target.wait_for_completion(show_output = True)\n",
"print(aks_target.provisioning_state)\n", "print(aks_target.provisioning_state)\n",
"print(aks_target.provisioning_errors)" "print(aks_target.provisioning_errors)"
@@ -673,6 +685,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"%%time\n",
"from azureml.core.webservice import Webservice, AksWebservice\n", "from azureml.core.webservice import Webservice, AksWebservice\n",
"\n", "\n",
"# Set the web service configuration (for creating a test service, we don't want autoscale enabled)\n", "# Set the web service configuration (for creating a test service, we don't want autoscale enabled)\n",
@@ -681,7 +694,7 @@
" num_replicas=1,\n", " num_replicas=1,\n",
" auth_enabled = False)\n", " auth_enabled = False)\n",
"\n", "\n",
"aks_service_name ='my-aks-service'\n", "aks_service_name ='my-aks-service-2'\n",
"\n", "\n",
"aks_service = Webservice.deploy_from_image(workspace = ws,\n", "aks_service = Webservice.deploy_from_image(workspace = ws,\n",
" name = aks_service_name,\n", " name = aks_service_name,\n",
@@ -700,10 +713,9 @@
"\n", "\n",
"<a id=\"create-client\"></a>\n", "<a id=\"create-client\"></a>\n",
"### 9.a. Create Client\n", "### 9.a. Create Client\n",
"The image supports gRPC and the TensorFlow Serving \"predict\" API. We have a client that can call into the docker image to get predictions. \n", "The image supports gRPC and the TensorFlow Serving \"predict\" API. We will create a PredictionClient from the Webservice object that can call into the docker image to get predictions. If you do not have the Webservice object, you can also create [PredictionClient](https://docs.microsoft.com/en-us/python/api/azureml-accel-models/azureml.accel.predictionclient?view=azure-ml-py) directly.\n",
"\n",
"**Note:** If you chose to use auth_enabled=True when creating your AksWebservice.deploy_configuration(), see documentation [here](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.webservice(class)?view=azure-ml-py#get-keys--) on how to retrieve your keys and use either key as an argument to PredictionClient(...,access_token=key).",
"\n", "\n",
"**Note:** If you chose to use auth_enabled=True when creating your AksWebservice.deploy_configuration(), see documentation [here](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.webservice(class)?view=azure-ml-py#get-keys--) on how to retrieve your keys and use either key as an argument to PredictionClient(...,access_token=key).\n",
"**WARNING:** If you are running on Azure Notebooks free compute, you will not be able to make outgoing calls to your service. Try locating your client on a different machine to consume it." "**WARNING:** If you are running on Azure Notebooks free compute, you will not be able to make outgoing calls to your service. Try locating your client on a different machine to consume it."
] ]
}, },
@@ -714,18 +726,10 @@
"outputs": [], "outputs": [],
"source": [ "source": [
"# Using the grpc client in AzureML Accelerated Models SDK\n", "# Using the grpc client in AzureML Accelerated Models SDK\n",
"from azureml.accel.client import PredictionClient\n", "from azureml.accel import client_from_service\n",
"\n",
"address = aks_service.scoring_uri\n",
"ssl_enabled = address.startswith(\"https\")\n",
"address = address[address.find('/')+2:].strip('/')\n",
"port = 443 if ssl_enabled else 80\n",
"\n", "\n",
"# Initialize AzureML Accelerated Models client\n", "# Initialize AzureML Accelerated Models client\n",
"client = PredictionClient(address=address,\n", "client = client_from_service(aks_service)"
" port=port,\n",
" use_ssl=ssl_enabled,\n",
" service_name=aks_service.name)"
] ]
}, },
{ {
@@ -854,7 +858,7 @@
"name": "python", "name": "python",
"nbconvert_exporter": "python", "nbconvert_exporter": "python",
"pygments_lexer": "ipython3", "pygments_lexer": "ipython3",
"version": "3.6.0" "version": "3.5.6"
} }
}, },
"nbformat": 4, "nbformat": 4,

View File

@@ -0,0 +1,9 @@
name: accelerated-models-training
dependencies:
- pip:
- azureml-sdk
- azureml-accel-models
- tensorflow
- keras
- tqdm
- sklearn

View File

@@ -22,7 +22,7 @@
"If you want to log custom traces, you will follow the standard deplyment process for AKS and you will:\n", "If you want to log custom traces, you will follow the standard deplyment process for AKS and you will:\n",
"1. Update scoring file.\n", "1. Update scoring file.\n",
"2. Update aks configuration.\n", "2. Update aks configuration.\n",
"3. Build new image and deploy it. " "3. Deploy the model with this new configuration. "
] ]
}, },
{ {
@@ -178,7 +178,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## 6. Create your new Image" "## 6. Create Inference Configuration"
] ]
}, },
{ {
@@ -187,22 +187,11 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"from azureml.core.image import ContainerImage\n", "from azureml.core.model import InferenceConfig\n",
"\n", "\n",
"image_config = ContainerImage.image_configuration(execution_script = \"score.py\",\n", "inference_config = InferenceConfig(runtime= \"python\", \n",
" runtime = \"python\",\n", " entry_script=\"score.py\",\n",
" conda_file = \"myenv.yml\",\n", " conda_file=\"myenv.yml\")"
" description = \"Image with ridge regression model\",\n",
" tags = {'area': \"diabetes\", 'type': \"regression\"}\n",
" )\n",
"\n",
"image = ContainerImage.create(name = \"myimage1\",\n",
" # this is the model object\n",
" models = [model],\n",
" image_config = image_config,\n",
" workspace = ws)\n",
"\n",
"image.wait_for_creation(show_output = True)"
] ]
}, },
{ {
@@ -220,7 +209,7 @@
"source": [ "source": [
"from azureml.core.webservice import AciWebservice\n", "from azureml.core.webservice import AciWebservice\n",
"\n", "\n",
"aciconfig = AciWebservice.deploy_configuration(cpu_cores = 1, \n", "aci_deployment_config = AciWebservice.deploy_configuration(cpu_cores = 1, \n",
" memory_gb = 1, \n", " memory_gb = 1, \n",
" tags = {'area': \"diabetes\", 'type': \"regression\"}, \n", " tags = {'area': \"diabetes\", 'type': \"regression\"}, \n",
" description = 'Predict diabetes using regression model',\n", " description = 'Predict diabetes using regression model',\n",
@@ -236,11 +225,7 @@
"from azureml.core.webservice import Webservice\n", "from azureml.core.webservice import Webservice\n",
"\n", "\n",
"aci_service_name = 'my-aci-service-4'\n", "aci_service_name = 'my-aci-service-4'\n",
"print(aci_service_name)\n", "aci_service = Model.deploy(ws, aci_service_name, [model], inference_config, aci_deployment_config)\n",
"aci_service = Webservice.deploy_from_image(deployment_config = aciconfig,\n",
" image = image,\n",
" name = aci_service_name,\n",
" workspace = ws)\n",
"aci_service.wait_for_deployment(True)\n", "aci_service.wait_for_deployment(True)\n",
"print(aci_service.state)" "print(aci_service.state)"
] ]
@@ -361,7 +346,7 @@
"outputs": [], "outputs": [],
"source": [ "source": [
"#Set the web service configuration\n", "#Set the web service configuration\n",
"aks_config = AksWebservice.deploy_configuration(enable_app_insights=True)" "aks_deployment_config = AksWebservice.deploy_configuration(enable_app_insights=True)"
] ]
}, },
{ {
@@ -379,12 +364,12 @@
"source": [ "source": [
"if aks_target.provisioning_state== \"Succeeded\": \n", "if aks_target.provisioning_state== \"Succeeded\": \n",
" aks_service_name ='aks-w-dc5'\n", " aks_service_name ='aks-w-dc5'\n",
" aks_service = Webservice.deploy_from_image(workspace = ws, \n", " aks_service = Model.deploy(ws,\n",
" name = aks_service_name,\n", " aks_service_name, \n",
" image = image,\n", " [model], \n",
" deployment_config = aks_config,\n", " inference_config, \n",
" deployment_target = aks_target\n", " aks_deployment_config, \n",
" )\n", " deployment_target = aks_target) \n",
" aks_service.wait_for_deployment(show_output = True)\n", " aks_service.wait_for_deployment(show_output = True)\n",
" print(aks_service.state)\n", " print(aks_service.state)\n",
"else:\n", "else:\n",
@@ -464,7 +449,6 @@
"%%time\n", "%%time\n",
"aks_service.delete()\n", "aks_service.delete()\n",
"aci_service.delete()\n", "aci_service.delete()\n",
"image.delete()\n",
"model.delete()" "model.delete()"
] ]
} }

View File

@@ -0,0 +1,4 @@
name: enable-app-insights-in-production-service
dependencies:
- pip:
- azureml-sdk

View File

@@ -0,0 +1,4 @@
name: enable-data-collection-for-models-in-aks
dependencies:
- pip:
- azureml-sdk

View File

@@ -243,7 +243,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Create container image\n", "### Setting up inference configuration\n",
"First we create a YAML file that specifies which dependencies we would like to see in our container." "First we create a YAML file that specifies which dependencies we would like to see in our container."
] ]
}, },
@@ -265,7 +265,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"Then we have Azure ML create the container. This step will likely take a few minutes." "Then we create the inference configuration."
] ]
}, },
{ {
@@ -274,48 +274,19 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"from azureml.core.image import ContainerImage\n", "from azureml.core.model import InferenceConfig\n",
"\n", "\n",
"image_config = ContainerImage.image_configuration(execution_script = \"score.py\",\n", "inference_config = InferenceConfig(runtime= \"python\", \n",
" runtime = \"python\",\n", " entry_script=\"score.py\",\n",
" conda_file = \"myenv.yml\",\n", " conda_file=\"myenv.yml\",\n",
" docker_file = \"Dockerfile\",\n", " extra_docker_file_steps = \"Dockerfile\")"
" description = \"TinyYOLO ONNX Demo\",\n",
" tags = {\"demo\": \"onnx\"}\n",
" )\n",
"\n",
"\n",
"image = ContainerImage.create(name = \"onnxyolo\",\n",
" models = [model],\n",
" image_config = image_config,\n",
" workspace = ws)\n",
"\n",
"image.wait_for_creation(show_output = True)"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"In case you need to debug your code, the next line of code accesses the log file." "### Deploy the model"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"print(image.image_build_log_uri)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We're all set! Let's get our model chugging.\n",
"\n",
"### Deploy the container image"
] ]
}, },
{ {
@@ -336,7 +307,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"The following cell will likely take a few minutes to run as well." "The following cell will take a few minutes to run as the model gets packaged up and deployed to ACI."
] ]
}, },
{ {
@@ -348,14 +319,9 @@
"from azureml.core.webservice import Webservice\n", "from azureml.core.webservice import Webservice\n",
"from random import randint\n", "from random import randint\n",
"\n", "\n",
"aci_service_name = 'onnx-tinyyolo'+str(randint(0,100))\n", "aci_service_name = 'my-aci-service-15ad'\n",
"print(\"Service\", aci_service_name)\n", "print(\"Service\", aci_service_name)\n",
"\n", "aci_service = Model.deploy(ws, aci_service_name, [model], inference_config, aciconfig)\n",
"aci_service = Webservice.deploy_from_image(deployment_config = aciconfig,\n",
" image = image,\n",
" name = aci_service_name,\n",
" workspace = ws)\n",
"\n",
"aci_service.wait_for_deployment(True)\n", "aci_service.wait_for_deployment(True)\n",
"print(aci_service.state)" "print(aci_service.state)"
] ]

View File

@@ -0,0 +1,6 @@
name: onnx-convert-aml-deploy-tinyyolo
dependencies:
- pip:
- azureml-sdk
- git+https://github.com/apple/coremltools
- onnxmltools==1.3.1

View File

@@ -54,7 +54,7 @@
"\n", "\n",
"### 3. Download sample data and pre-trained ONNX model from ONNX Model Zoo.\n", "### 3. Download sample data and pre-trained ONNX model from ONNX Model Zoo.\n",
"\n", "\n",
"In the following lines of code, we download [the trained ONNX Emotion FER+ model and corresponding test data](https://github.com/onnx/models/tree/master/emotion_ferplus) and place them in the same folder as this tutorial notebook. For more information about the FER+ dataset, please visit Microsoft Researcher Emad Barsoum's [FER+ source data repository](https://github.com/ebarsoum/FERPlus)." "In the following lines of code, we download [the trained ONNX Emotion FER+ model and corresponding test data](https://github.com/onnx/models/tree/master/vision/body_analysis/emotion_ferplus) and place them in the same folder as this tutorial notebook. For more information about the FER+ dataset, please visit Microsoft Researcher Emad Barsoum's [FER+ source data repository](https://github.com/ebarsoum/FERPlus)."
] ]
}, },
{ {
@@ -176,7 +176,7 @@
"source": [ "source": [
"### ONNX FER+ Model Methodology\n", "### ONNX FER+ Model Methodology\n",
"\n", "\n",
"The image classification model we are using is pre-trained using Microsoft's deep learning cognitive toolkit, [CNTK](https://github.com/Microsoft/CNTK), from the [ONNX model zoo](http://github.com/onnx/models). The model zoo has many other models that can be deployed on cloud providers like AzureML without any additional training. To ensure that our cloud deployed model works, we use testing data from the well-known FER+ data set, provided as part of the [trained Emotion Recognition model](https://github.com/onnx/models/tree/master/emotion_ferplus) in the ONNX model zoo.\n", "The image classification model we are using is pre-trained using Microsoft's deep learning cognitive toolkit, [CNTK](https://github.com/Microsoft/CNTK), from the [ONNX model zoo](http://github.com/onnx/models). The model zoo has many other models that can be deployed on cloud providers like AzureML without any additional training. To ensure that our cloud deployed model works, we use testing data from the well-known FER+ data set, provided as part of the [trained Emotion Recognition model](https://github.com/onnx/models/tree/master/vision/body_analysis/emotion_ferplus) in the ONNX model zoo.\n",
"\n", "\n",
"The original Facial Emotion Recognition (FER) Dataset was released in 2013 by Pierre-Luc Carrier and Aaron Courville as part of a [Kaggle Competition](https://www.kaggle.com/c/challenges-in-representation-learning-facial-expression-recognition-challenge/data), but some of the labels are not entirely appropriate for the expression. In the FER+ Dataset, each photo was evaluated by at least 10 croud sourced reviewers, creating a more accurate basis for ground truth. \n", "The original Facial Emotion Recognition (FER) Dataset was released in 2013 by Pierre-Luc Carrier and Aaron Courville as part of a [Kaggle Competition](https://www.kaggle.com/c/challenges-in-representation-learning-facial-expression-recognition-challenge/data), but some of the labels are not entirely appropriate for the expression. In the FER+ Dataset, each photo was evaluated by at least 10 croud sourced reviewers, creating a more accurate basis for ground truth. \n",
"\n", "\n",
@@ -341,9 +341,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Create the Container Image\n", "### Setup inference configuration"
"\n",
"This step will likely take a few minutes."
] ]
}, },
{ {
@@ -352,48 +350,19 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"from azureml.core.image import ContainerImage\n", "from azureml.core.model import InferenceConfig\n",
"\n", "\n",
"image_config = ContainerImage.image_configuration(execution_script = \"score.py\",\n", "inference_config = InferenceConfig(runtime= \"python\", \n",
" runtime = \"python\",\n", " entry_script=\"score.py\",\n",
" conda_file = \"myenv.yml\",\n", " conda_file=\"myenv.yml\",\n",
" docker_file = \"Dockerfile\",\n", " extra_docker_file_steps = \"Dockerfile\")"
" description = \"Emotion ONNX Runtime container\",\n",
" tags = {\"demo\": \"onnx\"})\n",
"\n",
"\n",
"image = ContainerImage.create(name = \"onnximage\",\n",
" # this is the model object\n",
" models = [model],\n",
" image_config = image_config,\n",
" workspace = ws)\n",
"\n",
"image.wait_for_creation(show_output = True)"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"In case you need to debug your code, the next line of code accesses the log file." "### Deploy the model"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"print(image.image_build_log_uri)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We're all done specifying what we want our virtual machine to do. Let's configure and deploy our container image.\n",
"\n",
"### Deploy the container image"
] ]
}, },
{ {
@@ -410,6 +379,13 @@
" description = 'ONNX for emotion recognition model')" " description = 'ONNX for emotion recognition model')"
] ]
}, },
{
"cell_type": "markdown",
"metadata": {},
"source": [
"The following cell will likely take a few minutes to run as well."
]
},
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
@@ -420,23 +396,11 @@
"\n", "\n",
"aci_service_name = 'onnx-demo-emotion'\n", "aci_service_name = 'onnx-demo-emotion'\n",
"print(\"Service\", aci_service_name)\n", "print(\"Service\", aci_service_name)\n",
"\n", "aci_service = Model.deploy(ws, aci_service_name, [model], inference_config, aciconfig)\n",
"aci_service = Webservice.deploy_from_image(deployment_config = aciconfig,\n",
" image = image,\n",
" name = aci_service_name,\n",
" workspace = ws)\n",
"\n",
"aci_service.wait_for_deployment(True)\n", "aci_service.wait_for_deployment(True)\n",
"print(aci_service.state)" "print(aci_service.state)"
] ]
}, },
{
"cell_type": "markdown",
"metadata": {},
"source": [
"The following cell will likely take a few minutes to run as well."
]
},
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
@@ -470,7 +434,7 @@
"\n", "\n",
"### Useful Helper Functions\n", "### Useful Helper Functions\n",
"\n", "\n",
"We preprocess and postprocess our data (see score.py file) using the helper functions specified in the [ONNX FER+ Model page in the Model Zoo repository](https://github.com/onnx/models/tree/master/emotion_ferplus)." "We preprocess and postprocess our data (see score.py file) using the helper functions specified in the [ONNX FER+ Model page in the Model Zoo repository](https://github.com/onnx/models/tree/master/vision/body_analysis/emotion_ferplus)."
] ]
}, },
{ {

View File

@@ -0,0 +1,9 @@
name: onnx-inference-facial-expression-recognition-deploy
dependencies:
- pip:
- azureml-sdk
- azureml-widgets
- matplotlib
- numpy
- onnx
- opencv-python

View File

@@ -54,7 +54,7 @@
"\n", "\n",
"### 3. Download sample data and pre-trained ONNX model from ONNX Model Zoo.\n", "### 3. Download sample data and pre-trained ONNX model from ONNX Model Zoo.\n",
"\n", "\n",
"In the following lines of code, we download [the trained ONNX MNIST model and corresponding test data](https://github.com/onnx/models/tree/master/mnist) and place them in the same folder as this tutorial notebook. For more information about the MNIST dataset, please visit [Yan LeCun's website](http://yann.lecun.com/exdb/mnist/)." "In the following lines of code, we download [the trained ONNX MNIST model and corresponding test data](https://github.com/onnx/models/tree/master/vision/classification/mnist) and place them in the same folder as this tutorial notebook. For more information about the MNIST dataset, please visit [Yan LeCun's website](http://yann.lecun.com/exdb/mnist/)."
] ]
}, },
{ {
@@ -187,7 +187,7 @@
"source": [ "source": [
"### ONNX MNIST Model Methodology\n", "### ONNX MNIST Model Methodology\n",
"\n", "\n",
"The image classification model we are using is pre-trained using Microsoft's deep learning cognitive toolkit, [CNTK](https://github.com/Microsoft/CNTK), from the [ONNX model zoo](http://github.com/onnx/models). The model zoo has many other models that can be deployed on cloud providers like AzureML without any additional training. To ensure that our cloud deployed model works, we use testing data from the famous MNIST data set, provided as part of the [trained MNIST model](https://github.com/onnx/models/tree/master/mnist) in the ONNX model zoo.\n", "The image classification model we are using is pre-trained using Microsoft's deep learning cognitive toolkit, [CNTK](https://github.com/Microsoft/CNTK), from the [ONNX model zoo](http://github.com/onnx/models). The model zoo has many other models that can be deployed on cloud providers like AzureML without any additional training. To ensure that our cloud deployed model works, we use testing data from the famous MNIST data set, provided as part of the [trained MNIST model](https://github.com/onnx/models/tree/master/vision/classification/mnist) in the ONNX model zoo.\n",
"\n", "\n",
"***Input: Handwritten Images from MNIST Dataset***\n", "***Input: Handwritten Images from MNIST Dataset***\n",
"\n", "\n",
@@ -325,8 +325,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Create the Container Image\n", "### Create Inference Configuration"
"This step will likely take a few minutes."
] ]
}, },
{ {
@@ -335,48 +334,19 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"from azureml.core.image import ContainerImage\n", "from azureml.core.model import InferenceConfig\n",
"\n", "\n",
"image_config = ContainerImage.image_configuration(execution_script = \"score.py\",\n", "inference_config = InferenceConfig(runtime= \"python\", \n",
" runtime = \"python\",\n", " entry_script=\"score.py\",\n",
" conda_file = \"myenv.yml\",\n", " extra_docker_file_steps = \"Dockerfile\",\n",
" docker_file = \"Dockerfile\",\n", " conda_file=\"myenv.yml\")"
" description = \"MNIST ONNX Runtime container\",\n",
" tags = {\"demo\": \"onnx\"}) \n",
"\n",
"\n",
"image = ContainerImage.create(name = \"onnximage\",\n",
" # this is the model object\n",
" models = [model],\n",
" image_config = image_config,\n",
" workspace = ws)\n",
"\n",
"image.wait_for_creation(show_output = True)"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"In case you need to debug your code, the next line of code accesses the log file." "### Deploy the model"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"print(image.image_build_log_uri)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We're all done specifying what we want our virtual machine to do. Let's configure and deploy our container image.\n",
"\n",
"### Deploy the container image"
] ]
}, },
{ {
@@ -397,7 +367,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"The following cell will likely take a few minutes to run as well." "The following cell will likely take a few minutes to run."
] ]
}, },
{ {
@@ -410,12 +380,7 @@
"\n", "\n",
"aci_service_name = 'onnx-demo-mnist'\n", "aci_service_name = 'onnx-demo-mnist'\n",
"print(\"Service\", aci_service_name)\n", "print(\"Service\", aci_service_name)\n",
"\n", "aci_service = Model.deploy(ws, aci_service_name, [model], inference_config, aciconfig)\n",
"aci_service = Webservice.deploy_from_image(deployment_config = aciconfig,\n",
" image = image,\n",
" name = aci_service_name,\n",
" workspace = ws)\n",
"\n",
"aci_service.wait_for_deployment(True)\n", "aci_service.wait_for_deployment(True)\n",
"print(aci_service.state)" "print(aci_service.state)"
] ]

View File

@@ -0,0 +1,9 @@
name: onnx-inference-mnist-deploy
dependencies:
- pip:
- azureml-sdk
- azureml-widgets
- matplotlib
- numpy
- onnx
- opencv-python

View File

@@ -28,7 +28,7 @@
"ONNX is an open format for representing machine learning and deep learning models. ONNX enables open and interoperable AI by enabling data scientists and developers to use the tools of their choice without worrying about lock-in and flexibility to deploy to a variety of platforms. ONNX is developed and supported by a community of partners including Microsoft, Facebook, and Amazon. For more information, explore the [ONNX website](http://onnx.ai).\n", "ONNX is an open format for representing machine learning and deep learning models. ONNX enables open and interoperable AI by enabling data scientists and developers to use the tools of their choice without worrying about lock-in and flexibility to deploy to a variety of platforms. ONNX is developed and supported by a community of partners including Microsoft, Facebook, and Amazon. For more information, explore the [ONNX website](http://onnx.ai).\n",
"\n", "\n",
"## ResNet50 Details\n", "## ResNet50 Details\n",
"ResNet classifies the major object in an input image into a set of 1000 pre-defined classes. For more information about the ResNet50 model and how it was created can be found on the [ONNX Model Zoo github](https://github.com/onnx/models/tree/master/models/image_classification/resnet). " "ResNet classifies the major object in an input image into a set of 1000 pre-defined classes. For more information about the ResNet50 model and how it was created can be found on the [ONNX Model Zoo github](https://github.com/onnx/models/tree/master/vision/classification/resnet). "
] ]
}, },
{ {
@@ -221,7 +221,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Create container image" "### Create inference configuration"
] ]
}, },
{ {
@@ -249,7 +249,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"Then we have Azure ML create the container. This step will likely take a few minutes." "Create the inference configuration object"
] ]
}, },
{ {
@@ -258,48 +258,19 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"from azureml.core.image import ContainerImage\n", "from azureml.core.model import InferenceConfig\n",
"\n", "\n",
"image_config = ContainerImage.image_configuration(execution_script = \"score.py\",\n", "inference_config = InferenceConfig(runtime= \"python\", \n",
" runtime = \"python\",\n", " entry_script=\"score.py\",\n",
" conda_file = \"myenv.yml\",\n", " conda_file=\"myenv.yml\",\n",
" docker_file = \"Dockerfile\",\n", " extra_docker_file_steps = \"Dockerfile\")"
" description = \"ONNX ResNet50 Demo\",\n",
" tags = {\"demo\": \"onnx\"}\n",
" )\n",
"\n",
"\n",
"image = ContainerImage.create(name = \"onnxresnet50v2\",\n",
" models = [model],\n",
" image_config = image_config,\n",
" workspace = ws)\n",
"\n",
"image.wait_for_creation(show_output = True)"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"In case you need to debug your code, the next line of code accesses the log file." "### Deploy the model"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"print(image.image_build_log_uri)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We're all set! Let's get our model chugging.\n",
"\n",
"### Deploy the container image"
] ]
}, },
{ {
@@ -334,12 +305,7 @@
"\n", "\n",
"aci_service_name = 'onnx-demo-resnet50'+str(randint(0,100))\n", "aci_service_name = 'onnx-demo-resnet50'+str(randint(0,100))\n",
"print(\"Service\", aci_service_name)\n", "print(\"Service\", aci_service_name)\n",
"\n", "aci_service = Model.deploy(ws, aci_service_name, [model], inference_config, aciconfig)\n",
"aci_service = Webservice.deploy_from_image(deployment_config = aciconfig,\n",
" image = image,\n",
" name = aci_service_name,\n",
" workspace = ws)\n",
"\n",
"aci_service.wait_for_deployment(True)\n", "aci_service.wait_for_deployment(True)\n",
"print(aci_service.state)" "print(aci_service.state)"
] ]

View File

@@ -0,0 +1,4 @@
name: onnx-modelzoo-aml-deploy-resnet50
dependencies:
- pip:
- azureml-sdk

View File

@@ -28,7 +28,7 @@
"ONNX is an open format for representing machine learning and deep learning models. ONNX enables open and interoperable AI by enabling data scientists and developers to use the tools of their choice without worrying about lock-in and flexibility to deploy to a variety of platforms. ONNX is developed and supported by a community of partners including Microsoft, Facebook, and Amazon. For more information, explore the [ONNX website](http://onnx.ai).\n", "ONNX is an open format for representing machine learning and deep learning models. ONNX enables open and interoperable AI by enabling data scientists and developers to use the tools of their choice without worrying about lock-in and flexibility to deploy to a variety of platforms. ONNX is developed and supported by a community of partners including Microsoft, Facebook, and Amazon. For more information, explore the [ONNX website](http://onnx.ai).\n",
"\n", "\n",
"## MNIST Details\n", "## MNIST Details\n",
"The Modified National Institute of Standards and Technology (MNIST) dataset consists of 70,000 grayscale images. Each image is a handwritten digit of 28x28 pixels, representing numbers from 0 to 9. For more information about the MNIST dataset, please visit [Yan LeCun's website](http://yann.lecun.com/exdb/mnist/). For more information about the MNIST model and how it was created can be found on the [ONNX Model Zoo github](https://github.com/onnx/models/tree/master/mnist). " "The Modified National Institute of Standards and Technology (MNIST) dataset consists of 70,000 grayscale images. Each image is a handwritten digit of 28x28 pixels, representing numbers from 0 to 9. For more information about the MNIST dataset, please visit [Yan LeCun's website](http://yann.lecun.com/exdb/mnist/). For more information about the MNIST model and how it was created can be found on the [ONNX Model Zoo github](https://github.com/onnx/models/tree/master/vision/classification/mnist). "
] ]
}, },
{ {
@@ -401,7 +401,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Create container image\n", "### Create inference configuration\n",
"First we create a YAML file that specifies which dependencies we would like to see in our container." "First we create a YAML file that specifies which dependencies we would like to see in our container."
] ]
}, },
@@ -423,7 +423,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"Then we have Azure ML create the container. This step will likely take a few minutes." "Then we setup the inference configuration "
] ]
}, },
{ {
@@ -432,48 +432,19 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"from azureml.core.image import ContainerImage\n", "from azureml.core.model import InferenceConfig\n",
"\n", "\n",
"image_config = ContainerImage.image_configuration(execution_script = \"score.py\",\n", "inference_config = InferenceConfig(runtime= \"python\", \n",
" runtime = \"python\",\n", " entry_script=\"score.py\",\n",
" conda_file = \"myenv.yml\",\n", " conda_file=\"myenv.yml\",\n",
" docker_file = \"Dockerfile\",\n", " extra_docker_file_steps = \"Dockerfile\")"
" description = \"MNIST ONNX Demo\",\n",
" tags = {\"demo\": \"onnx\"}\n",
" )\n",
"\n",
"\n",
"image = ContainerImage.create(name = \"onnxmnistdemo\",\n",
" models = [model],\n",
" image_config = image_config,\n",
" workspace = ws)\n",
"\n",
"image.wait_for_creation(show_output = True)"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"In case you need to debug your code, the next line of code accesses the log file." "### Deploy the model"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"print(image.image_build_log_uri)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We're all set! Let's get our model chugging.\n",
"\n",
"### Deploy the container image"
] ]
}, },
{ {
@@ -504,16 +475,12 @@
"outputs": [], "outputs": [],
"source": [ "source": [
"from azureml.core.webservice import Webservice\n", "from azureml.core.webservice import Webservice\n",
"from azureml.core.model import Model\n",
"from random import randint\n", "from random import randint\n",
"\n", "\n",
"aci_service_name = 'onnx-demo-mnist'+str(randint(0,100))\n", "aci_service_name = 'onnx-demo-mnist'+str(randint(0,100))\n",
"print(\"Service\", aci_service_name)\n", "print(\"Service\", aci_service_name)\n",
"\n", "aci_service = Model.deploy(ws, aci_service_name, [model], inference_config, aciconfig)\n",
"aci_service = Webservice.deploy_from_image(deployment_config = aciconfig,\n",
" image = image,\n",
" name = aci_service_name,\n",
" workspace = ws)\n",
"\n",
"aci_service.wait_for_deployment(True)\n", "aci_service.wait_for_deployment(True)\n",
"print(aci_service.state)" "print(aci_service.state)"
] ]

View File

@@ -0,0 +1,5 @@
name: onnx-train-pytorch-aml-deploy-mnist
dependencies:
- pip:
- azureml-sdk
- azureml-widgets

View File

@@ -34,7 +34,6 @@
"from azureml.core import Workspace\n", "from azureml.core import Workspace\n",
"from azureml.core.compute import AksCompute, ComputeTarget\n", "from azureml.core.compute import AksCompute, ComputeTarget\n",
"from azureml.core.webservice import Webservice, AksWebservice\n", "from azureml.core.webservice import Webservice, AksWebservice\n",
"from azureml.core.image import Image\n",
"from azureml.core.model import Model" "from azureml.core.model import Model"
] ]
}, },
@@ -97,8 +96,51 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"# Create an image\n", "# Create the Environment\n",
"Create an image using the registered model the script that will load and run the model." "Create an environment that the model will be deployed with"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Environment\n",
"from azureml.core.conda_dependencies import CondaDependencies \n",
"\n",
"conda_deps = CondaDependencies.create(conda_packages=['numpy','scikit-learn'], pip_packages=['azureml-defaults'])\n",
"myenv = Environment(name='myenv')\n",
"myenv.python.conda_dependencies = conda_deps"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Use a custom Docker image\n",
"\n",
"You can also specify a custom Docker image to be used as base image if you don't want to use the default base image provided by Azure ML. Please make sure the custom Docker image has Ubuntu >= 16.04, Conda >= 4.5.\\* and Python(3.5.\\* or 3.6.\\*).\n",
"\n",
"Only supported with `python` runtime.\n",
"```python\n",
"# use an image available in public Container Registry without authentication\n",
"myenv.docker.base_image = \"mcr.microsoft.com/azureml/o16n-sample-user-base/ubuntu-miniconda\"\n",
"\n",
"# or, use an image available in a private Container Registry\n",
"myenv.docker.base_image = \"myregistry.azurecr.io/mycustomimage:1.0\"\n",
"myenv.docker.base_image_registry.address = \"myregistry.azurecr.io\"\n",
"myenv.docker.base_image_registry.username = \"username\"\n",
"myenv.docker.base_image_registry.password = \"password\"\n",
"```"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Write the Entry Script\n",
"Write the script that will be used to predict on your model"
] ]
}, },
{ {
@@ -136,67 +178,23 @@
" return error" " return error"
] ]
}, },
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.conda_dependencies import CondaDependencies \n",
"\n",
"myenv = CondaDependencies.create(conda_packages=['numpy','scikit-learn'])\n",
"\n",
"with open(\"myenv.yml\",\"w\") as f:\n",
" f.write(myenv.serialize_to_string())"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.image import ContainerImage\n",
"\n",
"image_config = ContainerImage.image_configuration(execution_script = \"score.py\",\n",
" runtime = \"python\",\n",
" conda_file = \"myenv.yml\",\n",
" description = \"Image with ridge regression model\",\n",
" tags = {'area': \"diabetes\", 'type': \"regression\"}\n",
" )\n",
"\n",
"image = ContainerImage.create(name = \"myimage1\",\n",
" # this is the model object\n",
" models = [model],\n",
" image_config = image_config,\n",
" workspace = ws)\n",
"\n",
"image.wait_for_creation(show_output = True)"
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"#### Use a custom Docker image\n", "# Create the InferenceConfig\n",
"Create the inference config that will be used when deploying the model"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.model import InferenceConfig\n",
"\n", "\n",
"You can also specify a custom Docker image to be used as base image if you don't want to use the default base image provided by Azure ML. Please make sure the custom Docker image has Ubuntu >= 16.04, Conda >= 4.5.\\* and Python(3.5.\\* or 3.6.\\*).\n", "inf_config = InferenceConfig(entry_script='score.py', environment=myenv)"
"\n",
"Only Supported for `ContainerImage`(from azureml.core.image) with `python` runtime.\n",
"```python\n",
"# use an image available in public Container Registry without authentication\n",
"image_config.base_image = \"mcr.microsoft.com/azureml/o16n-sample-user-base/ubuntu-miniconda\"\n",
"\n",
"# or, use an image available in a private Container Registry\n",
"image_config.base_image = \"myregistry.azurecr.io/mycustomimage:1.0\"\n",
"image_config.base_image_registry.address = \"myregistry.azurecr.io\"\n",
"image_config.base_image_registry.username = \"username\"\n",
"image_config.base_image_registry.password = \"password\"\n",
"\n",
"# or, use an image built during training.\n",
"image_config.base_image = run.properties[\"AzureML.DerivedImageName\"]\n",
"```\n",
"You can get the address of training image from the properties of a Run object. Only new runs submitted with azureml-sdk>=1.0.22 to AMLCompute targets will have the 'AzureML.DerivedImageName' property. Instructions on how to get a Run can be found in [manage-runs](../../training/manage-runs/manage-runs.ipynb). \n"
] ]
}, },
{ {
@@ -237,23 +235,21 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"'''\n", "# from azureml.core.compute import ComputeTarget, AksCompute\n",
"from azureml.core.compute import ComputeTarget, AksCompute\n",
"\n", "\n",
"# Create the compute configuration and set virtual network information\n", "# # Create the compute configuration and set virtual network information\n",
"config = AksCompute.provisioning_configuration(location=\"eastus2\")\n", "# config = AksCompute.provisioning_configuration(location=\"eastus2\")\n",
"config.vnet_resourcegroup_name = \"mygroup\"\n", "# config.vnet_resourcegroup_name = \"mygroup\"\n",
"config.vnet_name = \"mynetwork\"\n", "# config.vnet_name = \"mynetwork\"\n",
"config.subnet_name = \"default\"\n", "# config.subnet_name = \"default\"\n",
"config.service_cidr = \"10.0.0.0/16\"\n", "# config.service_cidr = \"10.0.0.0/16\"\n",
"config.dns_service_ip = \"10.0.0.10\"\n", "# config.dns_service_ip = \"10.0.0.10\"\n",
"config.docker_bridge_cidr = \"172.17.0.1/16\"\n", "# config.docker_bridge_cidr = \"172.17.0.1/16\"\n",
"\n", "\n",
"# Create the compute target\n", "# # Create the compute target\n",
"aks_target = ComputeTarget.create(workspace = ws,\n", "# aks_target = ComputeTarget.create(workspace = ws,\n",
" name = \"myaks\",\n", "# name = \"myaks\",\n",
" provisioning_configuration = config)\n", "# provisioning_configuration = config)"
"'''"
] ]
}, },
{ {
@@ -300,17 +296,15 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"'''\n", "# # Use the default configuration (can also provide parameters to customize)\n",
"# Use the default configuration (can also provide parameters to customize)\n", "# resource_id = '/subscriptions/92c76a2f-0e1c-4216-b65e-abf7a3f34c1e/resourcegroups/raymondsdk0604/providers/Microsoft.ContainerService/managedClusters/my-aks-0605d37425356b7d01'\n",
"resource_id = '/subscriptions/92c76a2f-0e1c-4216-b65e-abf7a3f34c1e/resourcegroups/raymondsdk0604/providers/Microsoft.ContainerService/managedClusters/my-aks-0605d37425356b7d01'\n",
"\n", "\n",
"create_name='my-existing-aks' \n", "# create_name='my-existing-aks' \n",
"# Create the cluster\n", "# # Create the cluster\n",
"attach_config = AksCompute.attach_configuration(resource_id=resource_id)\n", "# attach_config = AksCompute.attach_configuration(resource_id=resource_id)\n",
"aks_target = ComputeTarget.attach(workspace=ws, name=create_name, attach_configuration=attach_config)\n", "# aks_target = ComputeTarget.attach(workspace=ws, name=create_name, attach_configuration=attach_config)\n",
"# Wait for the operation to complete\n", "# # Wait for the operation to complete\n",
"aks_target.wait_for_completion(True)\n", "# aks_target.wait_for_completion(True)"
"'''"
] ]
}, },
{ {
@@ -326,8 +320,11 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"#Set the web service configuration (using default here)\n", "# Set the web service configuration (using default here)\n",
"aks_config = AksWebservice.deploy_configuration()" "aks_config = AksWebservice.deploy_configuration()\n",
"\n",
"# # Enable token auth and disable (key) auth on the webservice\n",
"# aks_config = AksWebservice.deploy_configuration(token_auth_enabled=True, auth_enabled=False)\n"
] ]
}, },
{ {
@@ -339,11 +336,13 @@
"%%time\n", "%%time\n",
"aks_service_name ='aks-service-1'\n", "aks_service_name ='aks-service-1'\n",
"\n", "\n",
"aks_service = Webservice.deploy_from_image(workspace = ws, \n", "aks_service = Model.deploy(workspace=ws,\n",
" name = aks_service_name,\n", " name=aks_service_name,\n",
" image = image,\n", " models=[model],\n",
" deployment_config = aks_config,\n", " inference_config=inf_config,\n",
" deployment_target = aks_target)\n", " deployment_config=aks_config,\n",
" deployment_target=aks_target)\n",
"\n",
"aks_service.wait_for_deployment(show_output = True)\n", "aks_service.wait_for_deployment(show_output = True)\n",
"print(aks_service.state)" "print(aks_service.state)"
] ]
@@ -390,11 +389,12 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"# retreive the API keys. AML generates two keys.\n", "# # if (key) auth is enabled, retrieve the API keys. AML generates two keys.\n",
"'''\n", "# key1, Key2 = aks_service.get_keys()\n",
"key1, Key2 = aks_service.get_keys()\n", "# print(key1)\n",
"print(key1)\n", "\n",
"'''" "# # if token auth is enabled, retrieve the token.\n",
"# access_token, refresh_after = aks_service.get_token()"
] ]
}, },
{ {
@@ -404,27 +404,28 @@
"outputs": [], "outputs": [],
"source": [ "source": [
"# construct raw HTTP request and send to the service\n", "# construct raw HTTP request and send to the service\n",
"'''\n", "# %%time\n",
"%%time\n",
"\n", "\n",
"import requests\n", "# import requests\n",
"\n", "\n",
"import json\n", "# import json\n",
"\n", "\n",
"test_sample = json.dumps({'data': [\n", "# test_sample = json.dumps({'data': [\n",
" [1,2,3,4,5,6,7,8,9,10], \n", "# [1,2,3,4,5,6,7,8,9,10], \n",
" [10,9,8,7,6,5,4,3,2,1]\n", "# [10,9,8,7,6,5,4,3,2,1]\n",
"]})\n", "# ]})\n",
"test_sample = bytes(test_sample,encoding = 'utf8')\n", "# test_sample = bytes(test_sample,encoding = 'utf8')\n",
"\n", "\n",
"# Don't forget to add key to the HTTP header.\n", "# # If (key) auth is enabled, don't forget to add key to the HTTP header.\n",
"headers = {'Content-Type':'application/json', 'Authorization': 'Bearer ' + key1}\n", "# headers = {'Content-Type':'application/json', 'Authorization': 'Bearer ' + key1}\n",
"\n", "\n",
"resp = requests.post(aks_service.scoring_uri, test_sample, headers=headers)\n", "# # If token auth is enabled, don't forget to add token to the HTTP header.\n",
"# headers = {'Content-Type':'application/json', 'Authorization': 'Bearer ' + access_token}\n",
"\n",
"# resp = requests.post(aks_service.scoring_uri, test_sample, headers=headers)\n",
"\n", "\n",
"\n", "\n",
"print(\"prediction:\", resp.text)\n", "# print(\"prediction:\", resp.text)"
"'''"
] ]
}, },
{ {
@@ -443,7 +444,6 @@
"source": [ "source": [
"%%time\n", "%%time\n",
"aks_service.delete()\n", "aks_service.delete()\n",
"image.delete()\n",
"model.delete()" "model.delete()"
] ]
} }

View File

@@ -0,0 +1,8 @@
name: production-deploy-to-aks
dependencies:
- pip:
- azureml-sdk
- matplotlib
- tqdm
- scipy
- sklearn

View File

@@ -0,0 +1,8 @@
name: register-model-create-image-deploy-service
dependencies:
- pip:
- azureml-sdk
- matplotlib
- tqdm
- scipy
- sklearn

View File

@@ -1,8 +1,11 @@
## Using explain model APIs ## Using explain model APIs
<a name="samples"></a>
# Explain Model SDK Sample Notebooks
Follow these sample notebooks to learn: Follow these sample notebooks to learn:
1. [Explain tabular data locally](explain-tabular-data-local): Basic example of explaining model trained on tabular data. 1. [Explain tabular data locally](tabular-data): Basic examples of explaining model trained on tabular data.
4. [Explain on remote AMLCompute](explain-on-amlcompute): Explain a model on a remote AMLCompute target. 2. [Explain on remote AMLCompute](azure-integration/remote-explanation): Explain a model on a remote AMLCompute target.
5. [Explain tabular data with Run History](explain-tabular-data-run-history): Explain a model with Run History. 3. [Explain tabular data with Run History](azure-integration/run-history): Explain a model with Run History.
7. [Explain raw features](explain-tabular-data-raw-features): Explain the raw features of a trained model. 4. [Operationalize model explanation](azure-integration/scoring-time): Operationalize model explanation as a web service.

View File

@@ -13,33 +13,80 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/explain-model/explain-on-amlcompute/regression-sklearn-on-amlcompute.png)" "![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/explain-model/azure-integration/remote-explanation/explain-model-on-amlcompute.png)"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"# Train using Azure Machine Learning Compute\n", "# Train and explain models remotely via Azure Machine Learning Compute\n",
"\n", "\n",
"* Initialize a Workspace\n", "\n",
"* Create an Experiment\n", "_**This notebook showcases how to use the Azure Machine Learning Interpretability SDK to train and explain a regression model remotely on an Azure Machine Leanrning Compute Target (AMLCompute).**_\n",
"* Introduction to AmlCompute\n", "\n",
"* Submit an AmlCompute run in a few different ways\n", "\n",
" - Provision as a run based compute target \n", "\n",
" - Provision as a persistent compute target (Basic)\n", "\n",
" - Provision as a persistent compute target (Advanced)\n", "## Table of Contents\n",
"* Additional operations to perform on AmlCompute\n", "\n",
"* Download model explanation data from the Run History Portal\n", "1. [Introduction](#Introduction)\n",
"* Print the explanation data" "1. [Setup](#Setup)\n",
" 1. Initialize a Workspace\n",
" 1. Create an Experiment\n",
" 1. Introduction to AmlCompute\n",
" 1. Submit an AmlCompute run in a few different ways\n",
" 1. Option 1: Provision as a run based compute target \n",
" 1. Option 2: Provision as a persistent compute target (Basic)\n",
" 1. Option 3: Provision as a persistent compute target (Advanced)\n",
"1. Additional operations to perform on AmlCompute\n",
"1. [Download model explanations from Azure Machine Learning Run History](#Download)\n",
"1. [Visualize explanations](#Visualize)\n",
"1. [Next steps](#Next)"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Prerequisites\n", "## Introduction\n",
"If you are using an Azure Machine Learning Notebook VM, you are all set. Otherwise, make sure you go through the [configuration notebook](../../../configuration.ipynb) first if you haven't." "\n",
"This notebook showcases how to train and explain a regression model remotely via Azure Machine Learning Compute (AMLCompute), and download the calculated explanations locally for visualization.\n",
"It demonstrates the API calls that you need to make to submit a run for training and explaining a model to AMLCompute, download the compute explanations remotely, and visualizing the global and local explanations via a visualization dashboard that provides an interactive way of discovering patterns in model predictions and downloaded explanations.\n",
"\n",
"We will showcase one of the tabular data explainers: TabularExplainer (SHAP).\n",
"\n",
"Problem: Boston Housing Price Prediction with scikit-learn (train a model and run an explainer remotely via AMLCompute, and download and visualize the remotely-calculated explanations.)\n",
"\n",
"| ![explanations-run-history](./img/explanations-run-history.PNG) |\n",
"|:--:|\n"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Setup\n",
"If you are using an Azure Machine Learning Notebook VM, you are all set. Otherwise, make sure you go through the [configuration notebook](../../../configuration.ipynb) first if you haven't.\n",
"\n",
"\n",
"You will need to have extensions enabled prior to jupyter kernel starting to see the visualization dashboard.\n",
"```\n",
"(myenv) $ jupyter nbextension install --py --sys-prefix azureml.contrib.explain.model.visualize\n",
"(myenv) $ jupyter nbextension enable --py --sys-prefix azureml.contrib.explain.model.visualize\n",
"```\n",
"Or\n",
"\n",
"```\n",
"(myenv) $ jupyter nbextension install azureml.contrib.explain.model.visualize --user --py\n",
"(myenv) $ jupyter nbextension enable azureml.contrib.explain.model.visualize --user --py\n",
"```\n",
"\n",
"If you are using Jupyter Labs run the following commands instead:\n",
"```\n",
"(myenv) $ jupyter labextension install @jupyter-widgets/jupyterlab-manager\n",
"(myenv) $ jupyter labextension install microsoft-mli-widget\n",
"```"
] ]
}, },
{ {
@@ -116,7 +163,7 @@
"**Note**: As with other Azure services, there are limits on certain resources (for eg. AmlCompute quota) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota.\n", "**Note**: As with other Azure services, there are limits on certain resources (for eg. AmlCompute quota) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota.\n",
"\n", "\n",
"\n", "\n",
"The training script `run_explainer.py` is already created for you. Let's have a look." "The training script `train_explain.py` is already created for you. Let's have a look."
] ]
}, },
{ {
@@ -162,14 +209,14 @@
"\n", "\n",
"project_folder = './explainer-remote-run-on-amlcompute'\n", "project_folder = './explainer-remote-run-on-amlcompute'\n",
"os.makedirs(project_folder, exist_ok=True)\n", "os.makedirs(project_folder, exist_ok=True)\n",
"shutil.copy('run_explainer.py', project_folder)" "shutil.copy('train_explain.py', project_folder)"
] ]
}, },
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Provision as a run based compute target\n", "### Option 1: Provision as a run based compute target\n",
"\n", "\n",
"You can provision AmlCompute as a compute target at run-time. In this case, the compute is auto-created for your run, scales up to max_nodes that you specify, and then **deleted automatically** after the run completes." "You can provision AmlCompute as a compute target at run-time. In this case, the compute is auto-created for your run, scales up to max_nodes that you specify, and then **deleted automatically** after the run completes."
] ]
@@ -205,7 +252,7 @@
"\n", "\n",
"azureml_pip_packages = [\n", "azureml_pip_packages = [\n",
" 'azureml-defaults', 'azureml-contrib-explain-model', 'azureml-core', 'azureml-telemetry',\n", " 'azureml-defaults', 'azureml-contrib-explain-model', 'azureml-core', 'azureml-telemetry',\n",
" 'azureml-explain-model'\n", " 'azureml-explain-model', 'sklearn-pandas', 'azureml-dataprep'\n",
"]\n", "]\n",
"\n", "\n",
"# specify CondaDependencies obj\n", "# specify CondaDependencies obj\n",
@@ -216,7 +263,7 @@
"from azureml.core.script_run_config import ScriptRunConfig\n", "from azureml.core.script_run_config import ScriptRunConfig\n",
"\n", "\n",
"script_run_config = ScriptRunConfig(source_directory=project_folder,\n", "script_run_config = ScriptRunConfig(source_directory=project_folder,\n",
" script='run_explainer.py',\n", " script='train_explain.py',\n",
" run_config=run_config)\n", " run_config=run_config)\n",
"\n", "\n",
"run = experiment.submit(script_run_config)\n", "run = experiment.submit(script_run_config)\n",
@@ -247,7 +294,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Provision as a persistent compute target (Basic)\n", "### Option 2: Provision as a persistent compute target (Basic)\n",
"\n", "\n",
"You can provision a persistent AmlCompute resource by simply defining two parameters thanks to smart defaults. By default it autoscales from 0 nodes and provisions dedicated VMs to run your job in a container. This is useful when you want to continously re-use the same target, debug it between jobs or simply share the resource with other users of your workspace.\n", "You can provision a persistent AmlCompute resource by simply defining two parameters thanks to smart defaults. By default it autoscales from 0 nodes and provisions dedicated VMs to run your job in a container. This is useful when you want to continously re-use the same target, debug it between jobs or simply share the resource with other users of your workspace.\n",
"\n", "\n",
@@ -306,7 +353,7 @@
"\n", "\n",
"azureml_pip_packages = [\n", "azureml_pip_packages = [\n",
" 'azureml-defaults', 'azureml-contrib-explain-model', 'azureml-core', 'azureml-telemetry',\n", " 'azureml-defaults', 'azureml-contrib-explain-model', 'azureml-core', 'azureml-telemetry',\n",
" 'azureml-explain-model'\n", " 'azureml-explain-model', 'azureml-dataprep'\n",
"]\n", "]\n",
"\n", "\n",
"# specify CondaDependencies obj\n", "# specify CondaDependencies obj\n",
@@ -317,7 +364,7 @@
"from azureml.core import ScriptRunConfig\n", "from azureml.core import ScriptRunConfig\n",
"\n", "\n",
"src = ScriptRunConfig(source_directory=project_folder, \n", "src = ScriptRunConfig(source_directory=project_folder, \n",
" script='run_explainer.py', \n", " script='train_explain.py', \n",
" run_config=run_config) \n", " run_config=run_config) \n",
"run = experiment.submit(config=src)\n", "run = experiment.submit(config=src)\n",
"run" "run"
@@ -347,7 +394,7 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"### Provision as a persistent compute target (Advanced)\n", "### Option 3: Provision as a persistent compute target (Advanced)\n",
"\n", "\n",
"You can also specify additional properties or change defaults while provisioning AmlCompute using a more advanced configuration. This is useful when you want a dedicated cluster of 4 nodes (for example you can set the min_nodes and max_nodes to 4), or want the compute to be within an existing VNet in your subscription.\n", "You can also specify additional properties or change defaults while provisioning AmlCompute using a more advanced configuration. This is useful when you want a dedicated cluster of 4 nodes (for example you can set the min_nodes and max_nodes to 4), or want the compute to be within an existing VNet in your subscription.\n",
"\n", "\n",
@@ -417,9 +464,11 @@
"\n", "\n",
"azureml_pip_packages = [\n", "azureml_pip_packages = [\n",
" 'azureml-defaults', 'azureml-contrib-explain-model', 'azureml-core', 'azureml-telemetry',\n", " 'azureml-defaults', 'azureml-contrib-explain-model', 'azureml-core', 'azureml-telemetry',\n",
" 'azureml-explain-model'\n", " 'azureml-explain-model', 'azureml-dataprep'\n",
"]\n", "]\n",
"\n", "\n",
"\n",
"\n",
"# specify CondaDependencies obj\n", "# specify CondaDependencies obj\n",
"run_config.environment.python.conda_dependencies = CondaDependencies.create(conda_packages=['scikit-learn'],\n", "run_config.environment.python.conda_dependencies = CondaDependencies.create(conda_packages=['scikit-learn'],\n",
" pip_packages=azureml_pip_packages)\n", " pip_packages=azureml_pip_packages)\n",
@@ -428,7 +477,7 @@
"from azureml.core import ScriptRunConfig\n", "from azureml.core import ScriptRunConfig\n",
"\n", "\n",
"src = ScriptRunConfig(source_directory=project_folder, \n", "src = ScriptRunConfig(source_directory=project_folder, \n",
" script='run_explainer.py', \n", " script='train_explain.py', \n",
" run_config=run_config) \n", " run_config=run_config) \n",
"run = experiment.submit(config=src)\n", "run = experiment.submit(config=src)\n",
"run" "run"
@@ -515,7 +564,8 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Download Model Explanation Data" "## Download \n",
"1. Download model explanation data."
] ]
}, },
{ {
@@ -528,9 +578,9 @@
"\n", "\n",
"# Get model explanation data\n", "# Get model explanation data\n",
"client = ExplanationClient.from_run(run)\n", "client = ExplanationClient.from_run(run)\n",
"explanation = client.download_model_explanation()\n", "global_explanation = client.download_model_explanation()\n",
"local_importance_values = explanation.local_importance_values\n", "local_importance_values = global_explanation.local_importance_values\n",
"expected_values = explanation.expected_values\n" "expected_values = global_explanation.expected_values\n"
] ]
}, },
{ {
@@ -541,9 +591,9 @@
"source": [ "source": [
"# Or you can use the saved run.id to retrive the feature importance values\n", "# Or you can use the saved run.id to retrive the feature importance values\n",
"client = ExplanationClient.from_run_id(ws, experiment_name, run.id)\n", "client = ExplanationClient.from_run_id(ws, experiment_name, run.id)\n",
"explanation = client.download_model_explanation()\n", "global_explanation = client.download_model_explanation()\n",
"local_importance_values = explanation.local_importance_values\n", "local_importance_values = global_explanation.local_importance_values\n",
"expected_values = explanation.expected_values" "expected_values = global_explanation.expected_values"
] ]
}, },
{ {
@@ -553,9 +603,9 @@
"outputs": [], "outputs": [],
"source": [ "source": [
"# Get the top k (e.g., 4) most important features with their importance values\n", "# Get the top k (e.g., 4) most important features with their importance values\n",
"explanation = client.download_model_explanation(top_k=4)\n", "global_explanation_topk = client.download_model_explanation(top_k=4)\n",
"global_importance_values = explanation.get_ranked_global_values()\n", "global_importance_values = global_explanation_topk.get_ranked_global_values()\n",
"global_importance_names = explanation.get_ranked_global_names()" "global_importance_names = global_explanation_topk.get_ranked_global_names()"
] ]
}, },
{ {
@@ -572,9 +622,101 @@
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
"source": [ "source": [
"## Success!\n", "2. Download model file."
"Great, you are ready to move on to the remaining notebooks."
] ]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# retrieve model for visualization and deployment\n",
"from azureml.core.model import Model\n",
"from sklearn.externals import joblib\n",
"original_model = Model(ws, 'original_model')\n",
"model_path = original_model.download(exist_ok=True)\n",
"original_model = joblib.load(model_path)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"3. Download test dataset."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# retrieve x_test for visualization\n",
"from sklearn.externals import joblib\n",
"x_test_path = './x_test_boston_housing.pkl'\n",
"run.download_file('x_test_boston_housing.pkl', output_file_path=x_test_path)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"x_test = joblib.load('x_test_boston_housing.pkl')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Visualize\n",
"Load the visualization dashboard"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.contrib.explain.model.visualize import ExplanationDashboard"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ExplanationDashboard(global_explanation, original_model, x_test)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Next\n",
"Learn about other use cases of the explain package on a:\n",
"1. [Training time: regression problem](../../tabular-data/explain-binary-classification-local.ipynb) \n",
"1. [Training time: binary classification problem](../../tabular-data/explain-binary-classification-local.ipynb)\n",
"1. [Training time: multiclass classification problem](../../tabular-data/explain-multiclass-classification-local.ipynb)\n",
"1. Explain models with engineered features:\n",
" 1. [Simple feature transformations](../../tabular-data/simple-feature-transformations-explain-local.ipynb)\n",
" 1. [Advanced feature transformations](../../tabular-data/advanced-feature-transformations-explain-local.ipynb)\n",
"1. [Save model explanations via Azure Machine Learning Run History](../run-history/save-retrieve-explanations-run-history.ipynb)\n",
"1. Inferencing time: deploy a classification model and explainer:\n",
" 1. [Deploy a locally-trained model and explainer](../scoring-time/train-explain-model-locally-and-deploy.ipynb)\n",
" 1. [Deploy a remotely-trained model and explainer](../scoring-time/train-explain-model-on-amlcompute-and-deploy.ipynb)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
} }
], ],
"metadata": { "metadata": {

View File

@@ -0,0 +1,8 @@
name: explain-model-on-amlcompute
dependencies:
- pip:
- azureml-sdk
- azureml-explain-model
- azureml-contrib-explain-model
- sklearn-pandas
- azureml-dataprep

View File

@@ -11,7 +11,8 @@ from sklearn.externals import joblib
import os import os
import numpy as np import numpy as np
os.makedirs('./outputs', exist_ok=True) OUTPUT_DIR = './outputs/'
os.makedirs(OUTPUT_DIR, exist_ok=True)
boston_data = datasets.load_boston() boston_data = datasets.load_boston()
@@ -22,6 +23,12 @@ X_train, X_test, y_train, y_test = train_test_split(boston_data.data,
boston_data.target, boston_data.target,
test_size=0.2, test_size=0.2,
random_state=0) random_state=0)
# write x_test out as a pickle file for later visualization
x_test_pkl = 'x_test.pkl'
with open(x_test_pkl, 'wb') as file:
joblib.dump(value=X_test, filename=os.path.join(OUTPUT_DIR, x_test_pkl))
run.upload_file('x_test_boston_housing.pkl', os.path.join(OUTPUT_DIR, x_test_pkl))
alpha = 0.5 alpha = 0.5
# Use Ridge algorithm to create a regression model # Use Ridge algorithm to create a regression model
@@ -34,9 +41,13 @@ run.log('alpha', alpha)
model_file_name = 'ridge_{0:.2f}.pkl'.format(alpha) model_file_name = 'ridge_{0:.2f}.pkl'.format(alpha)
# save model in the outputs folder so it automatically get uploaded # save model in the outputs folder so it automatically get uploaded
with open(model_file_name, 'wb') as file: with open(model_file_name, 'wb') as file:
joblib.dump(value=reg, filename=os.path.join('./outputs/', joblib.dump(value=reg, filename=os.path.join(OUTPUT_DIR,
model_file_name)) model_file_name))
# register the model
run.upload_file('original_model.pkl', os.path.join('./outputs/', model_file_name))
original_model = run.register_model(model_name='original_model', model_path='original_model.pkl')
# Explain predictions on your local machine # Explain predictions on your local machine
tabular_explainer = TabularExplainer(model, X_train, features=boston_data.feature_names) tabular_explainer = TabularExplainer(model, X_train, features=boston_data.feature_names)

View File

@@ -0,0 +1,645 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/explain-model/azure-integration/run-history/save-retrieve-explanations-run-history.png)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Save and retrieve explanations via Azure Machine Learning Run History\n",
"\n",
"_**This notebook showcases how to use the Azure Machine Learning Interpretability SDK to save and retrieve classification model explanations to/from Azure Machine Learning Run History.**_\n",
"\n",
"\n",
"## Table of Contents\n",
"\n",
"1. [Introduction](#Introduction)\n",
"1. [Setup](#Setup)\n",
"1. [Run model explainer locally at training time](#Explain)\n",
" 1. Apply feature transformations\n",
" 1. Train a binary classification model\n",
" 1. Explain the model on raw features\n",
" 1. Generate global explanations\n",
" 1. Generate local explanations\n",
"1. [Upload model explanations to Azure Machine Learning Run History](#Upload)\n",
"1. [Download model explanations from Azure Machine Learning Run History](#Download)\n",
"1. [Visualize explanations](#Visualize)\n",
"1. [Next steps](#Next)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Introduction\n",
"\n",
"This notebook showcases how to explain a classification model predictions locally at training time, upload explanations to the Azure Machine Learning's run history, and download previously-uploaded explanations from the Run History.\n",
"It demonstrates the API calls that you need to make to upload/download the global and local explanations and a visualization dashboard that provides an interactive way of discovering patterns in data and downloaded explanations.\n",
"\n",
"We will showcase three tabular data explainers: TabularExplainer (SHAP), MimicExplainer (global surrogate), and PFIExplainer.\n",
"\n",
"\n",
"\n",
"Problem: IBM employee attrition classification with scikit-learn (run model explainer locally and upload explanation to the Azure Machine Learning Run History)\n",
"\n",
"1. Train a SVM classification model using Scikit-learn\n",
"2. Run 'explain_model' with AML Run History, which leverages run history service to store and manage the explanation data\n",
"---\n",
"\n",
"## Setup\n",
"\n",
"You will need to have extensions enabled prior to jupyter kernel starting to see the visualization dashboard.\n",
"```\n",
"(myenv) $ jupyter nbextension install --py --sys-prefix azureml.contrib.explain.model.visualize\n",
"(myenv) $ jupyter nbextension enable --py --sys-prefix azureml.contrib.explain.model.visualize\n",
"```\n",
"Or\n",
"\n",
"```\n",
"(myenv) $ jupyter nbextension install azureml.contrib.explain.model.visualize --user --py\n",
"(myenv) $ jupyter nbextension enable azureml.contrib.explain.model.visualize --user --py\n",
"```\n",
"\n",
"If you are using Jupyter Labs run the following commands instead:\n",
"```\n",
"(myenv) $ jupyter labextension install @jupyter-widgets/jupyterlab-manager\n",
"(myenv) $ jupyter labextension install microsoft-mli-widget\n",
"```"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Explain\n",
"\n",
"### Run model explainer locally at training time"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from sklearn.pipeline import Pipeline\n",
"from sklearn.impute import SimpleImputer\n",
"from sklearn.preprocessing import StandardScaler, OneHotEncoder\n",
"from sklearn.svm import SVC\n",
"import pandas as pd\n",
"import numpy as np\n",
"\n",
"# Explainers:\n",
"# 1. SHAP Tabular Explainer\n",
"from azureml.explain.model.tabular_explainer import TabularExplainer\n",
"\n",
"# OR\n",
"\n",
"# 2. Mimic Explainer\n",
"from azureml.explain.model.mimic.mimic_explainer import MimicExplainer\n",
"# You can use one of the following four interpretable models as a global surrogate to the black box model\n",
"from azureml.explain.model.mimic.models.lightgbm_model import LGBMExplainableModel\n",
"from azureml.explain.model.mimic.models.linear_model import LinearExplainableModel\n",
"from azureml.explain.model.mimic.models.linear_model import SGDExplainableModel\n",
"from azureml.explain.model.mimic.models.tree_model import DecisionTreeExplainableModel\n",
"\n",
"# OR\n",
"\n",
"# 3. PFI Explainer\n",
"from azureml.explain.model.permutation.permutation_importance import PFIExplainer "
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Load the IBM employee attrition data"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# get the IBM employee attrition dataset\n",
"outdirname = 'dataset.6.21.19'\n",
"try:\n",
" from urllib import urlretrieve\n",
"except ImportError:\n",
" from urllib.request import urlretrieve\n",
"import zipfile\n",
"zipfilename = outdirname + '.zip'\n",
"urlretrieve('https://publictestdatasets.blob.core.windows.net/data/' + zipfilename, zipfilename)\n",
"with zipfile.ZipFile(zipfilename, 'r') as unzip:\n",
" unzip.extractall('.')\n",
"attritionData = pd.read_csv('./WA_Fn-UseC_-HR-Employee-Attrition.csv')\n",
"\n",
"# Dropping Employee count as all values are 1 and hence attrition is independent of this feature\n",
"attritionData = attritionData.drop(['EmployeeCount'], axis=1)\n",
"# Dropping Employee Number since it is merely an identifier\n",
"attritionData = attritionData.drop(['EmployeeNumber'], axis=1)\n",
"\n",
"attritionData = attritionData.drop(['Over18'], axis=1)\n",
"\n",
"# Since all values are 80\n",
"attritionData = attritionData.drop(['StandardHours'], axis=1)\n",
"\n",
"# Converting target variables from string to numerical values\n",
"target_map = {'Yes': 1, 'No': 0}\n",
"attritionData[\"Attrition_numerical\"] = attritionData[\"Attrition\"].apply(lambda x: target_map[x])\n",
"target = attritionData[\"Attrition_numerical\"]\n",
"\n",
"attritionXData = attritionData.drop(['Attrition_numerical', 'Attrition'], axis=1)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Split data into train and test\n",
"from sklearn.model_selection import train_test_split\n",
"x_train, x_test, y_train, y_test = train_test_split(attritionXData, \n",
" target, \n",
" test_size = 0.2,\n",
" random_state=0,\n",
" stratify=target)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Creating dummy columns for each categorical feature\n",
"categorical = []\n",
"for col, value in attritionXData.iteritems():\n",
" if value.dtype == 'object':\n",
" categorical.append(col)\n",
" \n",
"# Store the numerical columns in a list numerical\n",
"numerical = attritionXData.columns.difference(categorical) "
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Transform raw features"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We can explain raw features by either using a `sklearn.compose.ColumnTransformer` or a list of fitted transformer tuples. The cell below uses `sklearn.compose.ColumnTransformer`. In case you want to run the example with the list of fitted transformer tuples, comment the cell below and uncomment the cell that follows after. "
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from sklearn.compose import ColumnTransformer\n",
"\n",
"# We create the preprocessing pipelines for both numeric and categorical data.\n",
"numeric_transformer = Pipeline(steps=[\n",
" ('imputer', SimpleImputer(strategy='median')),\n",
" ('scaler', StandardScaler())])\n",
"\n",
"categorical_transformer = Pipeline(steps=[\n",
" ('imputer', SimpleImputer(strategy='constant', fill_value='missing')),\n",
" ('onehot', OneHotEncoder(handle_unknown='ignore'))])\n",
"\n",
"transformations = ColumnTransformer(\n",
" transformers=[\n",
" ('num', numeric_transformer, numerical),\n",
" ('cat', categorical_transformer, categorical)])\n",
"\n",
"# Append classifier to preprocessing pipeline.\n",
"# Now we have a full prediction pipeline.\n",
"clf = Pipeline(steps=[('preprocessor', transformations),\n",
" ('classifier', SVC(kernel='linear', C = 1.0, probability=True))])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"'''\n",
"# Uncomment below if sklearn-pandas is not installed\n",
"#!pip install sklearn-pandas\n",
"from sklearn_pandas import DataFrameMapper\n",
"\n",
"# Impute, standardize the numeric features and one-hot encode the categorical features. \n",
"\n",
"\n",
"numeric_transformations = [([f], Pipeline(steps=[('imputer', SimpleImputer(strategy='median')), ('scaler', StandardScaler())])) for f in numerical]\n",
"\n",
"categorical_transformations = [([f], OneHotEncoder(handle_unknown='ignore', sparse=False)) for f in categorical]\n",
"\n",
"transformations = numeric_transformations + categorical_transformations\n",
"\n",
"# Append classifier to preprocessing pipeline.\n",
"# Now we have a full prediction pipeline.\n",
"clf = Pipeline(steps=[('preprocessor', transformations),\n",
" ('classifier', SVC(kernel='linear', C = 1.0, probability=True))]) \n",
"\n",
"\n",
"\n",
"'''"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Train a SVM classification model, which you want to explain"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"model = clf.fit(x_train, y_train)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Explain predictions on your local machine"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# 1. Using SHAP TabularExplainer\n",
"# clf.steps[-1][1] returns the trained classification model\n",
"explainer = TabularExplainer(clf.steps[-1][1], \n",
" initialization_examples=x_train, \n",
" features=attritionXData.columns, \n",
" classes=[\"Not leaving\", \"leaving\"], \n",
" transformations=transformations)\n",
"\n",
"\n",
"\n",
"\n",
"# 2. Using MimicExplainer\n",
"# augment_data is optional and if true, oversamples the initialization examples to improve surrogate model accuracy to fit original model. Useful for high-dimensional data where the number of rows is less than the number of columns. \n",
"# max_num_of_augmentations is optional and defines max number of times we can increase the input data size.\n",
"# LGBMExplainableModel can be replaced with LinearExplainableModel, SGDExplainableModel, or DecisionTreeExplainableModel\n",
"# explainer = MimicExplainer(clf.steps[-1][1], \n",
"# x_train, \n",
"# LGBMExplainableModel, \n",
"# augment_data=True, \n",
"# max_num_of_augmentations=10, \n",
"# features=attritionXData.columns, \n",
"# classes=[\"Not leaving\", \"leaving\"], \n",
"# transformations=transformations)\n",
"\n",
"\n",
"\n",
"\n",
"\n",
"# 3. Using PFIExplainer\n",
"\n",
"# Use the parameter \"metric\" to pass a metric name or function to evaluate the permutation. \n",
"# Note that if a metric function is provided a higher value must be better.\n",
"# Otherwise, take the negative of the function or set the parameter \"is_error_metric\" to True.\n",
"# Default metrics: \n",
"# F1 Score for binary classification, F1 Score with micro average for multiclass classification and\n",
"# Mean absolute error for regression\n",
"\n",
"# explainer = PFIExplainer(clf.steps[-1][1], \n",
"# features=x_train.columns, \n",
"# transformations=transformations,\n",
"# classes=[\"Not leaving\", \"leaving\"])"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Generate global explanations\n",
"Explain overall model predictions (global explanation)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Passing in test dataset for evaluation examples - note it must be a representative sample of the original data\n",
"# x_train can be passed as well, but with more examples explanations will take longer although they may be more accurate\n",
"global_explanation = explainer.explain_global(x_test)\n",
"\n",
"# Note: if you used the PFIExplainer in the previous step, use the next line of code instead\n",
"# global_explanation = explainer.explain_global(x_test, true_labels=y_test)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Sorted SHAP values\n",
"print('ranked global importance values: {}'.format(global_explanation.get_ranked_global_values()))\n",
"# Corresponding feature names\n",
"print('ranked global importance names: {}'.format(global_explanation.get_ranked_global_names()))\n",
"# Feature ranks (based on original order of features)\n",
"print('global importance rank: {}'.format(global_explanation.global_importance_rank))\n",
"\n",
"# Note: PFIExplainer does not support per class explanations\n",
"# Per class feature names\n",
"print('ranked per class feature names: {}'.format(global_explanation.get_ranked_per_class_names()))\n",
"# Per class feature importance values\n",
"print('ranked per class feature values: {}'.format(global_explanation.get_ranked_per_class_values()))"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Print out a dictionary that holds the sorted feature importance names and values\n",
"print('global importance rank: {}'.format(global_explanation.get_feature_importance_dict()))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Explain overall model predictions as a collection of local (instance-level) explanations"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# feature shap values for all features and all data points in the training data\n",
"print('local importance values: {}'.format(global_explanation.local_importance_values))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Generate local explanations\n",
"Explain local data points (individual instances)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Note: PFIExplainer does not support local explanations\n",
"# You can pass a specific data point or a group of data points to the explain_local function\n",
"\n",
"# E.g., Explain the first data point in the test set\n",
"instance_num = 1\n",
"local_explanation = explainer.explain_local(x_test[:instance_num])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Get the prediction for the first member of the test set and explain why model made that prediction\n",
"prediction_value = clf.predict(x_test)[instance_num]\n",
"\n",
"sorted_local_importance_values = local_explanation.get_ranked_local_values()[prediction_value]\n",
"sorted_local_importance_names = local_explanation.get_ranked_local_names()[prediction_value]\n",
"\n",
"print('local importance values: {}'.format(sorted_local_importance_values))\n",
"print('local importance names: {}'.format(sorted_local_importance_names))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Upload\n",
"Upload explanations to Azure Machine Learning Run History"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import azureml.core\n",
"from azureml.core import Workspace, Experiment, Run\n",
"from azureml.explain.model.tabular_explainer import TabularExplainer\n",
"from azureml.contrib.explain.model.explanation.explanation_client import ExplanationClient\n",
"# Check core SDK version number\n",
"print(\"SDK version:\", azureml.core.VERSION)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ws = Workspace.from_config()\n",
"print('Workspace name: ' + ws.name, \n",
" 'Azure region: ' + ws.location, \n",
" 'Subscription id: ' + ws.subscription_id, \n",
" 'Resource group: ' + ws.resource_group, sep = '\\n')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"experiment_name = 'explain_model'\n",
"experiment = Experiment(ws, experiment_name)\n",
"run = experiment.start_logging()\n",
"client = ExplanationClient.from_run(run)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Uploading model explanation data for storage or visualization in webUX\n",
"# The explanation can then be downloaded on any compute\n",
"# Multiple explanations can be uploaded\n",
"client.upload_model_explanation(global_explanation, comment='global explanation: all features')\n",
"# Or you can only upload the explanation object with the top k feature info\n",
"#client.upload_model_explanation(global_explanation, top_k=2, comment='global explanation: Only top 2 features')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Uploading model explanation data for storage or visualization in webUX\n",
"# The explanation can then be downloaded on any compute\n",
"# Multiple explanations can be uploaded\n",
"client.upload_model_explanation(local_explanation, comment='local explanation for test point 1: all features')\n",
"\n",
"# Alterntively, you can only upload the local explanation object with the top k feature info\n",
"#client.upload_model_explanation(local_explanation, top_k=2, comment='local explanation: top 2 features')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Download\n",
"Download explanations from Azure Machine Learning Run History"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# List uploaded explanations\n",
"client.list_model_explanations()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"for explanation in client.list_model_explanations():\n",
" \n",
" if explanation['comment'] == 'local explanation for test point 1: all features':\n",
" downloaded_local_explanation = client.download_model_explanation(explanation_id=explanation['id'])\n",
" # You can pass a k value to only download the top k feature importance values\n",
" downloaded_local_explanation_top2 = client.download_model_explanation(top_k=2, explanation_id=explanation['id'])\n",
" \n",
" \n",
" elif explanation['comment'] == 'global explanation: all features':\n",
" downloaded_global_explanation = client.download_model_explanation(explanation_id=explanation['id'])\n",
" # You can pass a k value to only download the top k feature importance values\n",
" downloaded_global_explanation_top2 = client.download_model_explanation(top_k=2, explanation_id=explanation['id'])\n",
" "
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Visualize\n",
"Load the visualization dashboard"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.contrib.explain.model.visualize import ExplanationDashboard"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ExplanationDashboard(downloaded_global_explanation, model, x_test)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Next\n",
"Learn about other use cases of the explain package on a:\n",
"1. [Training time: regression problem](../../tabular-data/explain-binary-classification-local.ipynb) \n",
"1. [Training time: binary classification problem](../../tabular-data/explain-binary-classification-local.ipynb)\n",
"1. [Training time: multiclass classification problem](../../tabular-data/explain-multiclass-classification-local.ipynb)\n",
"1. Explain models with engineered features:\n",
" 1. [Simple feature transformations](../../tabular-data/simple-feature-transformations-explain-local.ipynb)\n",
" 1. [Advanced feature transformations](../../tabular-data/advanced-feature-transformations-explain-local.ipynb)\n",
"1. [Run explainers remotely on Azure Machine Learning Compute (AMLCompute)](../remote-explanation/explain-model-on-amlcompute.ipynb)\n",
"1. Inferencing time: deploy a classification model and explainer:\n",
" 1. [Deploy a locally-trained model and explainer](../scoring-time/train-explain-model-locally-and-deploy.ipynb)\n",
" 1. [Deploy a remotely-trained model and explainer](../scoring-time/train-explain-model-on-amlcompute-and-deploy.ipynb)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"authors": [
{
"name": "mesameki"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.8"
}
},
"nbformat": 4,
"nbformat_minor": 2
}

View File

@@ -0,0 +1,6 @@
name: save-retrieve-explanations-run-history
dependencies:
- pip:
- azureml-sdk
- azureml-explain-model
- azureml-contrib-explain-model

View File

@@ -0,0 +1,33 @@
import json
import numpy as np
import pandas as pd
import os
import pickle
from sklearn.externals import joblib
from sklearn.linear_model import LogisticRegression
from azureml.core.model import Model
def init():
global original_model
global scoring_explainer
# Retrieve the path to the model file using the model name
# Assume original model is named original_prediction_model
original_model_path = Model.get_model_path('original_model')
scoring_explainer_path = Model.get_model_path('IBM_attrition_explainer')
original_model = joblib.load(original_model_path)
scoring_explainer = joblib.load(scoring_explainer_path)
def run(raw_data):
# Get predictions and explanations for each data point
data = pd.read_json(raw_data)
# Make prediction
predictions = original_model.predict(data)
# Retrieve model explanations
local_importance_values = scoring_explainer.explain(data)
# You can return any data type as long as it is JSON-serializable
return {'predictions': predictions.tolist(), 'local_importance_values': local_importance_values}

View File

@@ -0,0 +1,513 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/explain-model/azure-integration/scoring-time/train-explain-model-locally-and-deploy.png)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Train and explain models locally and deploy model and scoring explainer\n",
"\n",
"\n",
"_**This notebook illustrates how to use the Azure Machine Learning Interpretability SDK to deploy a locally-trained model and its corresponding scoring explainer to Azure Container Instances (ACI) as a web service.**_\n",
"\n",
"\n",
"\n",
"\n",
"\n",
"Problem: IBM employee attrition classification with scikit-learn (train and explain a model locally and use Azure Container Instances (ACI) for deploying your model and its corresponding scoring explainer as a web service.)\n",
"\n",
"---\n",
"\n",
"## Table of Contents\n",
"\n",
"1. [Introduction](#Introduction)\n",
"1. [Setup](#Setup)\n",
"1. [Run model explainer locally at training time](#Explain)\n",
" 1. Apply feature transformations\n",
" 1. Train a binary classification model\n",
" 1. Explain the model on raw features\n",
" 1. Generate global explanations\n",
" 1. Generate local explanations\n",
"1. [Visualize explanations](#Visualize)\n",
"1. [Deploy model and scoring explainer](#Deploy)\n",
"1. [Next steps](#Next)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Introduction\n",
"\n",
"\n",
"This notebook showcases how to train and explain a classification model locally, and deploy the trained model and its corresponding explainer to Azure Container Instances (ACI).\n",
"It demonstrates the API calls that you need to make to submit a run for training and explaining a model to AMLCompute, download the compute explanations remotely, and visualizing the global and local explanations via a visualization dashboard that provides an interactive way of discovering patterns in model predictions and downloaded explanations. It also demonstrates how to use Azure Machine Learning MLOps capabilities to deploy your model and its corresponding explainer.\n",
"\n",
"We will showcase one of the tabular data explainers: TabularExplainer (SHAP) and follow these steps:\n",
"1.\tDevelop a machine learning script in Python which involves the training script and the explanation script.\n",
"2.\tRun the script locally.\n",
"3.\tUse the interpretability toolkit\u00e2\u20ac\u2122s visualization dashboard to visualize predictions and their explanation. If the metrics and explanations don't indicate a desired outcome, loop back to step 1 and iterate on your scripts.\n",
"5.\tAfter a satisfactory run is found, create a scoring explainer and register the persisted model and its corresponding explainer in the model registry.\n",
"6.\tDevelop a scoring script.\n",
"7.\tCreate an image and register it in the image registry.\n",
"8.\tDeploy the image as a web service in Azure.\n",
"\n",
"\n"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Setup\n",
"Make sure you go through the [configuration notebook](../../../../configuration.ipynb) first if you haven't."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Check core SDK version number\n",
"import azureml.core\n",
"\n",
"print(\"SDK version:\", azureml.core.VERSION)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Initialize a Workspace\n",
"\n",
"Initialize a workspace object from persisted configuration"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"tags": [
"create workspace"
]
},
"outputs": [],
"source": [
"from azureml.core import Workspace\n",
"\n",
"ws = Workspace.from_config()\n",
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep='\\n')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Explain\n",
"Create An Experiment: **Experiment** is a logical container in an Azure ML Workspace. It hosts run records which can include run metrics and output artifacts from your experiments."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Experiment\n",
"experiment_name = 'explain_model_at_scoring_time'\n",
"experiment = Experiment(workspace=ws, name=experiment_name)\n",
"run = experiment.start_logging()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# get IBM attrition data\n",
"import os\n",
"import pandas as pd\n",
"\n",
"outdirname = 'dataset.6.21.19'\n",
"try:\n",
" from urllib import urlretrieve\n",
"except ImportError:\n",
" from urllib.request import urlretrieve\n",
"import zipfile\n",
"zipfilename = outdirname + '.zip'\n",
"urlretrieve('https://publictestdatasets.blob.core.windows.net/data/' + zipfilename, zipfilename)\n",
"with zipfile.ZipFile(zipfilename, 'r') as unzip:\n",
" unzip.extractall('.')\n",
"attritionData = pd.read_csv('./WA_Fn-UseC_-HR-Employee-Attrition.csv')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from sklearn.model_selection import train_test_split\n",
"from sklearn.externals import joblib\n",
"from sklearn.preprocessing import StandardScaler, OneHotEncoder\n",
"from sklearn.impute import SimpleImputer\n",
"from sklearn.pipeline import Pipeline\n",
"from sklearn.linear_model import LogisticRegression\n",
"from sklearn.ensemble import RandomForestClassifier\n",
"from sklearn_pandas import DataFrameMapper\n",
"\n",
"from azureml.explain.model.tabular_explainer import TabularExplainer\n",
"\n",
"os.makedirs('./outputs', exist_ok=True)\n",
"\n",
"# Dropping Employee count as all values are 1 and hence attrition is independent of this feature\n",
"attritionData = attritionData.drop(['EmployeeCount'], axis=1)\n",
"# Dropping Employee Number since it is merely an identifier\n",
"attritionData = attritionData.drop(['EmployeeNumber'], axis=1)\n",
"attritionData = attritionData.drop(['Over18'], axis=1)\n",
"# Since all values are 80\n",
"attritionData = attritionData.drop(['StandardHours'], axis=1)\n",
"\n",
"# Converting target variables from string to numerical values\n",
"target_map = {'Yes': 1, 'No': 0}\n",
"attritionData[\"Attrition_numerical\"] = attritionData[\"Attrition\"].apply(lambda x: target_map[x])\n",
"target = attritionData[\"Attrition_numerical\"]\n",
"\n",
"attritionXData = attritionData.drop(['Attrition_numerical', 'Attrition'], axis=1)\n",
"\n",
"# Creating dummy columns for each categorical feature\n",
"categorical = []\n",
"for col, value in attritionXData.iteritems():\n",
" if value.dtype == 'object':\n",
" categorical.append(col)\n",
"\n",
"# Store the numerical columns in a list numerical\n",
"numerical = attritionXData.columns.difference(categorical)\n",
"\n",
"numeric_transformations = [([f], Pipeline(steps=[\n",
" ('imputer', SimpleImputer(strategy='median')),\n",
" ('scaler', StandardScaler())])) for f in numerical]\n",
"\n",
"categorical_transformations = [([f], OneHotEncoder(handle_unknown='ignore', sparse=False)) for f in categorical]\n",
"\n",
"transformations = numeric_transformations + categorical_transformations\n",
"\n",
"# Append classifier to preprocessing pipeline.\n",
"# Now we have a full prediction pipeline.\n",
"clf = Pipeline(steps=[('preprocessor', DataFrameMapper(transformations)),\n",
" ('classifier', RandomForestClassifier())])\n",
"\n",
"# Split data into train and test\n",
"from sklearn.model_selection import train_test_split\n",
"x_train, x_test, y_train, y_test = train_test_split(attritionXData,\n",
" target,\n",
" test_size = 0.2,\n",
" random_state=0,\n",
" stratify=target)\n",
"\n",
"# preprocess the data and fit the classification model\n",
"clf.fit(x_train, y_train)\n",
"model = clf.steps[-1][1]\n",
"\n",
"model_file_name = 'log_reg.pkl'\n",
"\n",
"# save model in the outputs folder so it automatically get uploaded\n",
"with open(model_file_name, 'wb') as file:\n",
" joblib.dump(value=clf, filename=os.path.join('./outputs/',\n",
" model_file_name))"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Explain predictions on your local machine\n",
"tabular_explainer = TabularExplainer(model, \n",
" initialization_examples=x_train, \n",
" features=attritionXData.columns, \n",
" classes=[\"Not leaving\", \"leaving\"], \n",
" transformations=transformations)\n",
"\n",
"# Explain overall model predictions (global explanation)\n",
"# Passing in test dataset for evaluation examples - note it must be a representative sample of the original data\n",
"# x_train can be passed as well, but with more examples explanations it will\n",
"# take longer although they may be more accurate\n",
"global_explanation = tabular_explainer.explain_global(x_test)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.explain.model.scoring.scoring_explainer import TreeScoringExplainer, save\n",
"# ScoringExplainer\n",
"scoring_explainer = TreeScoringExplainer(tabular_explainer)\n",
"# Pickle scoring explainer locally\n",
"save(scoring_explainer, exist_ok=True)\n",
"\n",
"# Register original model\n",
"run.upload_file('original_model.pkl', os.path.join('./outputs/', model_file_name))\n",
"original_model = run.register_model(model_name='original_model', model_path='original_model.pkl')\n",
"\n",
"# Register scoring explainer\n",
"run.upload_file('IBM_attrition_explainer.pkl', 'scoring_explainer.pkl')\n",
"scoring_explainer_model = run.register_model(model_name='IBM_attrition_explainer', model_path='IBM_attrition_explainer.pkl')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Visualize\n",
"Visualize the explanations"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.contrib.explain.model.visualize import ExplanationDashboard"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ExplanationDashboard(global_explanation, clf, x_test)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Deploy \n",
"\n",
"Deploy Model and ScoringExplainer"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.webservice import AciWebservice\n",
"\n",
"aciconfig = AciWebservice.deploy_configuration(cpu_cores=1, \n",
" memory_gb=1, \n",
" tags={\"data\": \"IBM_Attrition\", \n",
" \"method\" : \"local_explanation\"}, \n",
" description='Get local explanations for IBM Employee Attrition data')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.conda_dependencies import CondaDependencies \n",
"\n",
"# WARNING: to install this, g++ needs to be available on the Docker image and is not by default (look at the next cell)\n",
"azureml_pip_packages = [\n",
" 'azureml-defaults', 'azureml-contrib-explain-model', 'azureml-core', 'azureml-telemetry',\n",
" 'azureml-explain-model'\n",
"]\n",
" \n",
"\n",
"# specify CondaDependencies obj\n",
"myenv = CondaDependencies.create(conda_packages=['scikit-learn', 'pandas'],\n",
" pip_packages=['sklearn-pandas', 'pyyaml'] + azureml_pip_packages,\n",
" pin_sdk_version=False)\n",
"\n",
"with open(\"myenv.yml\",\"w\") as f:\n",
" f.write(myenv.serialize_to_string())\n",
"\n",
"with open(\"myenv.yml\",\"r\") as f:\n",
" print(f.read())"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"%%writefile dockerfile\n",
"RUN apt-get update && apt-get install -y g++ "
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.model import Model\n",
"# retrieve scoring explainer for deployment\n",
"scoring_explainer_model = Model(ws, 'IBM_attrition_explainer')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.webservice import Webservice\n",
"from azureml.core.image import ContainerImage\n",
"\n",
"# Use the custom scoring, docker, and conda files we created above\n",
"image_config = ContainerImage.image_configuration(execution_script=\"score.py\",\n",
" docker_file=\"dockerfile\", \n",
" runtime=\"python\", \n",
" conda_file=\"myenv.yml\")\n",
"\n",
"# Use configs and models generated above\n",
"service = Webservice.deploy_from_model(workspace=ws,\n",
" name='model-scoring',\n",
" deployment_config=aciconfig,\n",
" models=[scoring_explainer_model, original_model],\n",
" image_config=image_config)\n",
"\n",
"service.wait_for_deployment(show_output=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import requests\n",
"import json\n",
"\n",
"\n",
"# Create data to test service with\n",
"sample_data = '{\"Age\":{\"899\":49},\"BusinessTravel\":{\"899\":\"Travel_Rarely\"},\"DailyRate\":{\"899\":1098},\"Department\":{\"899\":\"Research & Development\"},\"DistanceFromHome\":{\"899\":4},\"Education\":{\"899\":2},\"EducationField\":{\"899\":\"Medical\"},\"EnvironmentSatisfaction\":{\"899\":1},\"Gender\":{\"899\":\"Male\"},\"HourlyRate\":{\"899\":85},\"JobInvolvement\":{\"899\":2},\"JobLevel\":{\"899\":5},\"JobRole\":{\"899\":\"Manager\"},\"JobSatisfaction\":{\"899\":3},\"MaritalStatus\":{\"899\":\"Married\"},\"MonthlyIncome\":{\"899\":18711},\"MonthlyRate\":{\"899\":12124},\"NumCompaniesWorked\":{\"899\":2},\"OverTime\":{\"899\":\"No\"},\"PercentSalaryHike\":{\"899\":13},\"PerformanceRating\":{\"899\":3},\"RelationshipSatisfaction\":{\"899\":3},\"StockOptionLevel\":{\"899\":1},\"TotalWorkingYears\":{\"899\":23},\"TrainingTimesLastYear\":{\"899\":2},\"WorkLifeBalance\":{\"899\":4},\"YearsAtCompany\":{\"899\":1},\"YearsInCurrentRole\":{\"899\":0},\"YearsSinceLastPromotion\":{\"899\":0},\"YearsWithCurrManager\":{\"899\":0}}'\n",
"\n",
"\n",
"\n",
"headers = {'Content-Type':'application/json'}\n",
"\n",
"# send request to service\n",
"resp = requests.post(service.scoring_uri, sample_data, headers=headers)\n",
"\n",
"print(\"POST to url\", service.scoring_uri)\n",
"# can covert back to Python objects from json string if desired\n",
"print(\"prediction:\", resp.text)\n",
"result = json.loads(resp.text)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#plot the feature importance for the prediction\n",
"import numpy as np\n",
"import matplotlib.pyplot as plt; plt.rcdefaults()\n",
"\n",
"labels = json.loads(sample_data)\n",
"labels = labels.keys()\n",
"objects = labels\n",
"y_pos = np.arange(len(objects))\n",
"performance = result[\"local_importance_values\"][0][0]\n",
"\n",
"plt.bar(y_pos, performance, align='center', alpha=0.5)\n",
"plt.xticks(y_pos, objects)\n",
"locs, labels = plt.xticks()\n",
"plt.setp(labels, rotation=90)\n",
"plt.ylabel('Feature impact - leaving vs not leaving')\n",
"plt.title('Local feature importance for prediction')\n",
"\n",
"plt.show()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"service.delete()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Next\n",
"Learn about other use cases of the explain package on a:\n",
"1. [Training time: regression problem](../../tabular-data/explain-binary-classification-local.ipynb) \n",
"1. [Training time: binary classification problem](../../tabular-data/explain-binary-classification-local.ipynb)\n",
"1. [Training time: multiclass classification problem](../../tabular-data/explain-multiclass-classification-local.ipynb)\n",
"1. Explain models with engineered features:\n",
" 1. [Simple feature transformations](../../tabular-data/simple-feature-transformations-explain-local.ipynb)\n",
" 1. [Advanced feature transformations](../../tabular-data/advanced-feature-transformations-explain-local.ipynb)\n",
"1. [Save model explanations via Azure Machine Learning Run History](../run-history/save-retrieve-explanations-run-history.ipynb)\n",
"1. [Run explainers remotely on Azure Machine Learning Compute (AMLCompute)](../remote-explanation/explain-model-on-amlcompute.ipynb)\n",
"1. [Inferencing time: deploy a remotely-trained model and explainer](./train-explain-model-on-amlcompute-and-deploy.ipynb)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"authors": [
{
"name": "mesameki"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.8"
}
},
"nbformat": 4,
"nbformat_minor": 2
}

View File

@@ -0,0 +1,7 @@
name: train-explain-model-locally-and-deploy
dependencies:
- pip:
- azureml-sdk
- azureml-explain-model
- azureml-contrib-explain-model
- sklearn-pandas

View File

@@ -0,0 +1,548 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
"\n",
"Licensed under the MIT License."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Impressions](https://PixelServer20190423114238.azurewebsites.net/api/impressions/MachineLearningNotebooks/how-to-use-azureml/explain-model/azure-integration/scoring-time/train-explain-model-on-amlcompute-and-deploy.png)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Train and explain models remotely via Azure Machine Learning Compute and deploy model and scoring explainer\n",
"\n",
"\n",
"_**This notebook illustrates how to use the Azure Machine Learning Interpretability SDK to train and explain a classification model remotely on an Azure Machine Leanrning Compute Target (AMLCompute), and use Azure Container Instances (ACI) for deploying your model and its corresponding scoring explainer as a web service.**_\n",
"\n",
"Problem: IBM employee attrition classification with scikit-learn (train a model and run an explainer remotely via AMLCompute, and deploy model and its corresponding explainer.)\n",
"\n",
"---\n",
"\n",
"## Table of Contents\n",
"\n",
"1. [Introduction](#Introduction)\n",
"1. [Setup](#Setup)\n",
"1. [Run model explainer locally at training time](#Explain)\n",
" 1. Apply feature transformations\n",
" 1. Train a binary classification model\n",
" 1. Explain the model on raw features\n",
" 1. Generate global explanations\n",
" 1. Generate local explanations\n",
"1. [Visualize results](#Visualize)\n",
"1. [Deploy model and scoring explainer](#Deploy)\n",
"1. [Next steps](#Next)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Introduction\n",
"\n",
"This notebook showcases how to train and explain a classification model remotely via Azure Machine Learning Compute (AMLCompute), download the calculated explanations locally for visualization and inspection, and deploy the final model and its corresponding explainer to Azure Container Instances (ACI).\n",
"It demonstrates the API calls that you need to make to submit a run for training and explaining a model to AMLCompute, download the compute explanations remotely, and visualizing the global and local explanations via a visualization dashboard that provides an interactive way of discovering patterns in model predictions and downloaded explanations, and using Azure Machine Learning MLOps capabilities to deploy your model and its corresponding explainer.\n",
"\n",
"We will showcase one of the tabular data explainers: TabularExplainer (SHAP) and follow these steps:\n",
"1.\tDevelop a machine learning script in Python which involves the training script and the explanation script.\n",
"2.\tCreate and configure a compute target.\n",
"3.\tSubmit the scripts to the configured compute target to run in that environment. During training, the scripts can read from or write to datastore. And the records of execution (e.g., model, metrics, prediction explanations) are saved as runs in the workspace and grouped under experiments.\n",
"4.\tQuery the experiment for logged metrics and explanations from the current and past runs. Use the interpretability toolkit\u00e2\u20ac\u2122s visualization dashboard to visualize predictions and their explanation. If the metrics and explanations don't indicate a desired outcome, loop back to step 1 and iterate on your scripts.\n",
"5.\tAfter a satisfactory run is found, create a scoring explainer and register the persisted model and its corresponding explainer in the model registry.\n",
"6.\tDevelop a scoring script.\n",
"7.\tCreate an image and register it in the image registry.\n",
"8.\tDeploy the image as a web service in Azure.\n",
"\n",
"| ![azure-machine-learning-cycle](./img/azure-machine-learning-cycle.PNG) |\n",
"|:--:|"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Setup\n",
"Make sure you go through the [configuration notebook](../../../../configuration.ipynb) first if you haven't."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Check core SDK version number\n",
"import azureml.core\n",
"\n",
"print(\"SDK version:\", azureml.core.VERSION)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Initialize a Workspace\n",
"\n",
"Initialize a workspace object from persisted configuration"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"tags": [
"create workspace"
]
},
"outputs": [],
"source": [
"from azureml.core import Workspace\n",
"\n",
"ws = Workspace.from_config()\n",
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep='\\n')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Explain\n",
"\n",
"Create An Experiment: **Experiment** is a logical container in an Azure ML Workspace. It hosts run records which can include run metrics and output artifacts from your experiments."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core import Experiment\n",
"experiment_name = 'explainer-remote-run-on-amlcompute'\n",
"experiment = Experiment(workspace=ws, name=experiment_name)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Introduction to AmlCompute\n",
"\n",
"Azure Machine Learning Compute is managed compute infrastructure that allows the user to easily create single to multi-node compute of the appropriate VM Family. It is created **within your workspace region** and is a resource that can be used by other users in your workspace. It autoscales by default to the max_nodes, when a job is submitted, and executes in a containerized environment packaging the dependencies as specified by the user. \n",
"\n",
"Since it is managed compute, job scheduling and cluster management are handled internally by Azure Machine Learning service. \n",
"\n",
"For more information on Azure Machine Learning Compute, please read [this article](https://docs.microsoft.com/azure/machine-learning/service/how-to-set-up-training-targets#amlcompute)\n",
"\n",
"If you are an existing BatchAI customer who is migrating to Azure Machine Learning, please read [this article](https://aka.ms/batchai-retirement)\n",
"\n",
"**Note**: As with other Azure services, there are limits on certain resources (for eg. AmlCompute quota) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota.\n",
"\n",
"\n",
"The training script `run_explainer.py` is already created for you. Let's have a look."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Submit an AmlCompute run in a few different ways\n",
"\n",
"First lets check which VM families are available in your region. Azure is a regional service and some specialized SKUs (especially GPUs) are only available in certain regions. Since AmlCompute is created in the region of your workspace, we will use the supported_vms () function to see if the VM family we want to use ('STANDARD_D2_V2') is supported.\n",
"\n",
"You can also pass a different region to check availability and then re-create your workspace in that region through the [configuration notebook](../../../configuration.ipynb)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.compute import ComputeTarget, AmlCompute\n",
"\n",
"AmlCompute.supported_vmsizes(workspace=ws)\n",
"# AmlCompute.supported_vmsizes(workspace=ws, location='southcentralus')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Create project directory\n",
"\n",
"Create a directory that will contain all the necessary code from your local machine that you will need access to on the remote resource. This includes the training script, and any additional files your training script depends on"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"import shutil\n",
"\n",
"project_folder = './explainer-remote-run-on-amlcompute'\n",
"os.makedirs(project_folder, exist_ok=True)\n",
"shutil.copy('train_explain.py', project_folder)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Provision as a run based compute target\n",
"\n",
"You can provision AmlCompute as a compute target at run-time. In this case, the compute is auto-created for your run, scales up to max_nodes that you specify, and then **deleted automatically** after the run completes."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.runconfig import RunConfiguration\n",
"from azureml.core.conda_dependencies import CondaDependencies\n",
"from azureml.core.runconfig import DEFAULT_CPU_IMAGE\n",
"\n",
"# create a new runconfig object\n",
"run_config = RunConfiguration()\n",
"\n",
"# signal that you want to use AmlCompute to execute script.\n",
"run_config.target = \"amlcompute\"\n",
"\n",
"# AmlCompute will be created in the same region as workspace\n",
"# Set vm size for AmlCompute\n",
"run_config.amlcompute.vm_size = 'STANDARD_D2_V2'\n",
"\n",
"# enable Docker \n",
"run_config.environment.docker.enabled = True\n",
"\n",
"# set Docker base image to the default CPU-based image\n",
"run_config.environment.docker.base_image = DEFAULT_CPU_IMAGE\n",
"\n",
"# use conda_dependencies.yml to create a conda environment in the Docker image for execution\n",
"run_config.environment.python.user_managed_dependencies = False\n",
"\n",
"# auto-prepare the Docker image when used for execution (if it is not already prepared)\n",
"run_config.auto_prepare_environment = True\n",
"\n",
"azureml_pip_packages = [\n",
" 'azureml-defaults', 'azureml-contrib-explain-model', 'azureml-core', 'azureml-telemetry',\n",
" 'azureml-explain-model', 'azureml-dataprep'\n",
"]\n",
" \n",
"\n",
"\n",
"# specify CondaDependencies obj\n",
"run_config.environment.python.conda_dependencies = CondaDependencies.create(conda_packages=['scikit-learn'],\n",
" pip_packages=['sklearn_pandas', 'pyyaml'] + azureml_pip_packages,\n",
" pin_sdk_version=False)\n",
"# Now submit a run on AmlCompute\n",
"from azureml.core.script_run_config import ScriptRunConfig\n",
"\n",
"script_run_config = ScriptRunConfig(source_directory=project_folder,\n",
" script='train_explain.py',\n",
" run_config=run_config)\n",
"\n",
"run = experiment.submit(script_run_config)\n",
"\n",
"# Show run details\n",
"run"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Note: if you need to cancel a run, you can follow [these instructions](https://aka.ms/aml-docs-cancel-run)."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"%%time\n",
"# Shows output of the run on stdout.\n",
"run.wait_for_completion(show_output=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Delete () is used to deprovision and delete the AmlCompute target. Useful if you want to re-use the compute name \n",
"# 'cpucluster' in this case but use a different VM family for instance.\n",
"\n",
"# cpu_cluster.delete()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Download Model Explanation, Model, and Data"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# retrieve model for visualization and deployment\n",
"from azureml.core.model import Model\n",
"from sklearn.externals import joblib\n",
"original_model = Model(ws, 'original_model')\n",
"model_path = original_model.download(exist_ok=True)\n",
"original_svm_model = joblib.load(model_path)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# retrieve global explanation for visualization\n",
"from azureml.contrib.explain.model.explanation.explanation_client import ExplanationClient\n",
"\n",
"# get model explanation data\n",
"client = ExplanationClient.from_run(run)\n",
"global_explanation = client.download_model_explanation()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# retrieve x_test for visualization\n",
"from sklearn.externals import joblib\n",
"x_test_path = './x_test.pkl'\n",
"run.download_file('x_test_ibm.pkl', output_file_path=x_test_path)\n",
"x_test = joblib.load(x_test_path)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Visualize\n",
"Visualize the explanations"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.contrib.explain.model.visualize import ExplanationDashboard"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ExplanationDashboard(global_explanation, original_svm_model, x_test)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Deploy\n",
"Deploy Model and ScoringExplainer"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.webservice import AciWebservice\n",
"\n",
"aciconfig = AciWebservice.deploy_configuration(cpu_cores=1, \n",
" memory_gb=1, \n",
" tags={\"data\": \"IBM_Attrition\", \n",
" \"method\" : \"local_explanation\"}, \n",
" description='Get local explanations for IBM Employee Attrition data')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.conda_dependencies import CondaDependencies \n",
"\n",
"# WARNING: to install this, g++ needs to be available on the Docker image and is not by default (look at the next cell)\n",
"azureml_pip_packages = [\n",
" 'azureml-defaults', 'azureml-contrib-explain-model', 'azureml-core', 'azureml-telemetry',\n",
" 'azureml-explain-model'\n",
"]\n",
" \n",
"\n",
"# specify CondaDependencies obj\n",
"myenv = CondaDependencies.create(conda_packages=['scikit-learn', 'pandas'],\n",
" pip_packages=['sklearn-pandas', 'pyyaml'] + azureml_pip_packages,\n",
" pin_sdk_version=False)\n",
"\n",
"with open(\"myenv.yml\",\"w\") as f:\n",
" f.write(myenv.serialize_to_string())\n",
"\n",
"with open(\"myenv.yml\",\"r\") as f:\n",
" print(f.read())"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"%%writefile dockerfile\n",
"RUN apt-get update && apt-get install -y g++ "
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# retrieve scoring explainer for deployment\n",
"scoring_explainer_model = Model(ws, 'IBM_attrition_explainer')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from azureml.core.webservice import Webservice\n",
"from azureml.core.image import ContainerImage\n",
"\n",
"# Use the custom scoring, docker, and conda files we created above\n",
"image_config = ContainerImage.image_configuration(execution_script=\"score.py\",\n",
" docker_file=\"dockerfile\", \n",
" runtime=\"python\", \n",
" conda_file=\"myenv.yml\")\n",
"\n",
"# Use configs and models generated above\n",
"service = Webservice.deploy_from_model(workspace=ws,\n",
" name='model-scoring-service',\n",
" deployment_config=aciconfig,\n",
" models=[scoring_explainer_model, original_model],\n",
" image_config=image_config)\n",
"\n",
"service.wait_for_deployment(show_output=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import requests\n",
"\n",
"# create data to test service with\n",
"examples = x_test[:4]\n",
"input_data = examples.to_json()\n",
"\n",
"headers = {'Content-Type':'application/json'}\n",
"\n",
"# send request to service\n",
"resp = requests.post(service.scoring_uri, input_data, headers=headers)\n",
"\n",
"print(\"POST to url\", service.scoring_uri)\n",
"# can covert back to Python objects from json string if desired\n",
"print(\"prediction:\", resp.text)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"service.delete()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Next\n",
"Learn about other use cases of the explain package on a:\n",
"1. [Training time: regression problem](../../tabular-data/explain-binary-classification-local.ipynb) \n",
"1. [Training time: binary classification problem](../../tabular-data/explain-binary-classification-local.ipynb)\n",
"1. [Training time: multiclass classification problem](../../tabular-data/explain-multiclass-classification-local.ipynb)\n",
"1. Explain models with engineered features:\n",
" 1. [Simple feature transformations](../../tabular-data/simple-feature-transformations-explain-local.ipynb)\n",
" 1. [Advanced feature transformations](../../tabular-data/advanced-feature-transformations-explain-local.ipynb)\n",
"1. [Save model explanations via Azure Machine Learning Run History](../run-history/save-retrieve-explanations-run-history.ipynb)\n",
"1. [Run explainers remotely on Azure Machine Learning Compute (AMLCompute)](../remote-explanation/explain-model-on-amlcompute.ipynb)\n",
"1. [Inferencing time: deploy a locally-trained model and explainer](./train-explain-model-locally-and-deploy.ipynb)\n",
" "
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"authors": [
{
"name": "mesameki"
}
],
"kernelspec": {
"display_name": "Python 3.6",
"language": "python",
"name": "python36"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.8"
}
},
"nbformat": 4,
"nbformat_minor": 2
}

View File

@@ -0,0 +1,8 @@
name: train-explain-model-on-amlcompute-and-deploy
dependencies:
- pip:
- azureml-sdk
- azureml-explain-model
- azureml-contrib-explain-model
- sklearn-pandas
- azureml-dataprep

Some files were not shown because too many files have changed in this diff Show More