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30
.github/ISSUE_TEMPLATE/bug_report.md
vendored
Normal file
30
.github/ISSUE_TEMPLATE/bug_report.md
vendored
Normal file
@@ -0,0 +1,30 @@
|
||||
---
|
||||
name: Bug report
|
||||
about: Create a report to help us improve
|
||||
title: "[Notebook issue]"
|
||||
labels: ''
|
||||
assignees: ''
|
||||
|
||||
---
|
||||
|
||||
**Describe the bug**
|
||||
A clear and concise description of what the bug is.
|
||||
|
||||
Provide the following if applicable:
|
||||
+ Your Python & SDK version
|
||||
+ Python Scripts or the full notebook name
|
||||
+ Pipeline definition
|
||||
+ Environment definition
|
||||
+ Example data
|
||||
+ Any log files.
|
||||
+ Run and Workspace Id
|
||||
|
||||
**To Reproduce**
|
||||
Steps to reproduce the behavior:
|
||||
1.
|
||||
|
||||
**Expected behavior**
|
||||
A clear and concise description of what you expected to happen.
|
||||
|
||||
**Additional context**
|
||||
Add any other context about the problem here.
|
||||
43
.github/ISSUE_TEMPLATE/notebook-issue.md
vendored
Normal file
43
.github/ISSUE_TEMPLATE/notebook-issue.md
vendored
Normal file
@@ -0,0 +1,43 @@
|
||||
---
|
||||
name: Notebook issue
|
||||
about: Describe your notebook issue
|
||||
title: "[Notebook] DESCRIPTIVE TITLE"
|
||||
labels: notebook
|
||||
assignees: ''
|
||||
|
||||
---
|
||||
|
||||
### DESCRIPTION: Describe clearly + concisely
|
||||
|
||||
|
||||
.
|
||||
### REPRODUCIBLE: Steps
|
||||
|
||||
|
||||
.
|
||||
### EXPECTATION: Clear description
|
||||
|
||||
|
||||
.
|
||||
### CONFIG/ENVIRONMENT:
|
||||
```Provide where applicable
|
||||
|
||||
## Your Python & SDK version:
|
||||
|
||||
## Environment definition:
|
||||
|
||||
## Notebook name or Python scripts:
|
||||
|
||||
## Run and Workspace Id:
|
||||
|
||||
## Pipeline definition:
|
||||
|
||||
## Example data:
|
||||
|
||||
## Any log files:
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
```
|
||||
10
README.md
10
README.md
@@ -2,7 +2,8 @@
|
||||
|
||||
This repository contains example notebooks demonstrating the [Azure Machine Learning](https://azure.microsoft.com/en-us/services/machine-learning-service/) Python SDK which allows you to build, train, deploy and manage machine learning solutions using Azure. The AML SDK allows you the choice of using local or cloud compute resources, while managing and maintaining the complete data science workflow from the cloud.
|
||||
|
||||

|
||||

|
||||
|
||||
|
||||
## Quick installation
|
||||
```sh
|
||||
@@ -38,6 +39,7 @@ The [How to use Azure ML](./how-to-use-azureml) folder contains specific example
|
||||
- [Machine Learning Pipelines](./how-to-use-azureml/machine-learning-pipelines) - Examples showing how to create and use reusable pipelines for training and batch scoring
|
||||
- [Deployment](./how-to-use-azureml/deployment) - Examples showing how to deploy and manage machine learning models and solutions
|
||||
- [Azure Databricks](./how-to-use-azureml/azure-databricks) - Examples showing how to use Azure ML with Azure Databricks
|
||||
- [Monitor Models](./how-to-use-azureml/monitor-models) - Examples showing how to enable model monitoring services such as DataDrift
|
||||
|
||||
---
|
||||
## Documentation
|
||||
@@ -48,10 +50,14 @@ The [How to use Azure ML](./how-to-use-azureml) folder contains specific example
|
||||
|
||||
---
|
||||
|
||||
|
||||
## Community Repository
|
||||
Visit this [community repository](https://github.com/microsoft/MLOps/tree/master/examples) to find useful end-to-end sample notebooks. Also, please follow these [contribution guidelines](https://github.com/microsoft/MLOps/blob/master/contributing.md) when contributing to this repository.
|
||||
|
||||
## Projects using Azure Machine Learning
|
||||
|
||||
Visit following repos to see projects contributed by Azure ML users:
|
||||
|
||||
- [AMLSamples](https://github.com/Azure/AMLSamples) Number of end-to-end examples, including face recognition, predictive maintenance, customer churn and sentiment analysis.
|
||||
- [Fine tune natural language processing models using Azure Machine Learning service](https://github.com/Microsoft/AzureML-BERT)
|
||||
- [Fashion MNIST with Azure ML SDK](https://github.com/amynic/azureml-sdk-fashion)
|
||||
|
||||
|
||||
@@ -58,7 +58,7 @@
|
||||
"\n",
|
||||
"### What is an Azure Machine Learning workspace\n",
|
||||
"\n",
|
||||
"An Azure ML Workspace is an Azure resource that organizes and coordinates the actions of many other Azure resources to assist in executing and sharing machine learning workflows. In particular, an Azure ML Workspace coordinates storage, databases, and compute resources providing added functionality for machine learning experimentation, deployment, inferencing, and the monitoring of deployed models."
|
||||
"An Azure ML Workspace is an Azure resource that organizes and coordinates the actions of many other Azure resources to assist in executing and sharing machine learning workflows. In particular, an Azure ML Workspace coordinates storage, databases, and compute resources providing added functionality for machine learning experimentation, deployment, inference, and the monitoring of deployed models."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -103,7 +103,7 @@
|
||||
"source": [
|
||||
"import azureml.core\n",
|
||||
"\n",
|
||||
"print(\"This notebook was created using version 1.0.45 of the Azure ML SDK\")\n",
|
||||
"print(\"This notebook was created using version 1.0.62 of the Azure ML SDK\")\n",
|
||||
"print(\"You are currently using version\", azureml.core.VERSION, \"of the Azure ML SDK\")"
|
||||
]
|
||||
},
|
||||
@@ -258,7 +258,7 @@
|
||||
"```shell\n",
|
||||
"az vm list-skus -o tsv\n",
|
||||
"```\n",
|
||||
"* min_nodes - this sets the minimum size of the cluster. If you set the minimum to 0 the cluster will shut down all nodes while note in use. Setting this number to a value higher than 0 will allow for faster start-up times, but you will also be billed when the cluster is not in use.\n",
|
||||
"* min_nodes - this sets the minimum size of the cluster. If you set the minimum to 0 the cluster will shut down all nodes while not in use. Setting this number to a value higher than 0 will allow for faster start-up times, but you will also be billed when the cluster is not in use.\n",
|
||||
"* max_nodes - this sets the maximum size of the cluster. Setting this to a larger number allows for more concurrency and a greater distributed processing of scale-out jobs.\n",
|
||||
"\n",
|
||||
"\n",
|
||||
|
||||
4
configuration.yml
Normal file
4
configuration.yml
Normal file
@@ -0,0 +1,4 @@
|
||||
name: configuration
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
@@ -8,7 +8,7 @@ As a pre-requisite, run the [configuration Notebook](../configuration.ipynb) not
|
||||
* [train-on-local](./training/train-on-local): Learn how to submit a run to local computer and use Azure ML managed run configuration.
|
||||
* [train-on-amlcompute](./training/train-on-amlcompute): Use a 1-n node Azure ML managed compute cluster for remote runs on Azure CPU or GPU infrastructure.
|
||||
* [train-on-remote-vm](./training/train-on-remote-vm): Use Data Science Virtual Machine as a target for remote runs.
|
||||
* [logging-api](./training/logging-api): Learn about the details of logging metrics to run history.
|
||||
* [logging-api](./track-and-monitor-experiments/logging-api): Learn about the details of logging metrics to run history.
|
||||
* [register-model-create-image-deploy-service](./deployment/register-model-create-image-deploy-service): Learn about the details of model management.
|
||||
* [production-deploy-to-aks](./deployment/production-deploy-to-aks) Deploy a model to production at scale on Azure Kubernetes Service.
|
||||
* [enable-data-collection-for-models-in-aks](./deployment/enable-data-collection-for-models-in-aks) Learn about data collection APIs for deployed model.
|
||||
|
||||
@@ -155,11 +155,11 @@ jupyter notebook
|
||||
- [auto-ml-subsampling-local.ipynb](subsampling/auto-ml-subsampling-local.ipynb)
|
||||
- How to enable subsampling
|
||||
|
||||
- [auto-ml-dataprep.ipynb](dataprep/auto-ml-dataprep.ipynb)
|
||||
- Using DataPrep for reading data
|
||||
- [auto-ml-dataset.ipynb](dataprep/auto-ml-dataset.ipynb)
|
||||
- Using Dataset for reading data
|
||||
|
||||
- [auto-ml-dataprep-remote-execution.ipynb](dataprep-remote-execution/auto-ml-dataprep-remote-execution.ipynb)
|
||||
- Using DataPrep for reading data with remote execution
|
||||
- [auto-ml-dataset-remote-execution.ipynb](dataprep-remote-execution/auto-ml-dataset-remote-execution.ipynb)
|
||||
- Using Dataset for reading data with remote execution
|
||||
|
||||
- [auto-ml-classification-with-whitelisting.ipynb](classification-with-whitelisting/auto-ml-classification-with-whitelisting.ipynb)
|
||||
- Dataset: scikit learn's [digit dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_digits.html#sklearn.datasets.load_digits)
|
||||
@@ -175,10 +175,19 @@ jupyter notebook
|
||||
- Example of training an automated ML forecasting model on multiple time-series
|
||||
|
||||
- [auto-ml-classification-with-onnx.ipynb](classification-with-onnx/auto-ml-classification-with-onnx.ipynb)
|
||||
- Dataset: scikit learn's [digit dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_digits.html#sklearn.datasets.load_digits)
|
||||
- Dataset: scikit learn's [iris dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_iris.html)
|
||||
- Simple example of using automated ML for classification with ONNX models
|
||||
- Uses local compute for training
|
||||
|
||||
- [auto-ml-remote-amlcompute-with-onnx.ipynb](remote-amlcompute-with-onnx/auto-ml-remote-amlcompute-with-onnx.ipynb)
|
||||
- Dataset: scikit learn's [iris dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_iris.html)
|
||||
- Example of using automated ML for classification using remote AmlCompute for training
|
||||
- Train the models with ONNX compatible config on
|
||||
- Parallel execution of iterations
|
||||
- Async tracking of progress
|
||||
- Cancelling individual iterations or entire run
|
||||
- Retrieving the ONNX models and do the inference with them
|
||||
|
||||
- [auto-ml-bank-marketing-subscribers-with-deployment.ipynb](bank-marketing-subscribers-with-deployment/auto-ml-bank-marketing-with-deployment.ipynb)
|
||||
- Dataset: UCI's [bank marketing dataset](https://www.kaggle.com/janiobachmann/bank-marketing-dataset)
|
||||
- Simple example of using automated ML for classification to predict term deposit subscriptions for a bank
|
||||
@@ -220,7 +229,7 @@ The main code of the file must be indented so that it is under this condition.
|
||||
2. Check that you have conda 64-bit installed rather than 32-bit. You can check this with the command `conda info`. The `platform` should be `win-64` for Windows or `osx-64` for Mac.
|
||||
3. Check that you have conda 4.4.10 or later. You can check the version with the command `conda -V`. If you have a previous version installed, you can update it using the command: `conda update conda`.
|
||||
4. On Linux, if the error is `gcc: error trying to exec 'cc1plus': execvp: No such file or directory`, install build essentials using the command `sudo apt-get install build-essential`.
|
||||
5. Pass a new name as the first parameter to automl_setup so that it creates a new conda environment. You can view existing conda environments using `conda env list` and remove them with `conda env remove -n <environmentname>`.
|
||||
5. Pass a new name as the first parameter to automl_setup so that it creates a new conda environment. You can view existing conda environments using `conda env list` and remove them with `conda env remove -n <environmentname>`.
|
||||
|
||||
## automl_setup_linux.sh fails
|
||||
If automl_setup_linux.sh fails on Ubuntu Linux with the error: `unable to execute 'gcc': No such file or directory`
|
||||
@@ -255,13 +264,13 @@ Some Windows environments see an error loading numpy with the latest Python vers
|
||||
Check the tensorflow version in the automated ml conda environment. Supported versions are < 1.13. Uninstall tensorflow from the environment if version is >= 1.13
|
||||
You may check the version of tensorflow and uninstall as follows
|
||||
1) start a command shell, activate conda environment where automated ml packages are installed
|
||||
2) enter `pip freeze` and look for `tensorflow` , if found, the version listed should be < 1.13
|
||||
3) If the listed version is a not a supported version, `pip uninstall tensorflow` in the command shell and enter y for confirmation.
|
||||
2) enter `pip freeze` and look for `tensorflow` , if found, the version listed should be < 1.13
|
||||
3) If the listed version is a not a supported version, `pip uninstall tensorflow` in the command shell and enter y for confirmation.
|
||||
|
||||
## Remote run: DsvmCompute.create fails
|
||||
## Remote run: DsvmCompute.create fails
|
||||
There are several reasons why the DsvmCompute.create can fail. The reason is usually in the error message but you have to look at the end of the error message for the detailed reason. Some common reasons are:
|
||||
1) `Compute name is invalid, it should start with a letter, be between 2 and 16 character, and only include letters (a-zA-Z), numbers (0-9) and \'-\'.` Note that underscore is not allowed in the name.
|
||||
2) `The requested VM size xxxxx is not available in the current region.` You can select a different region or vm_size.
|
||||
2) `The requested VM size xxxxx is not available in the current region.` You can select a different region or vm_size.
|
||||
|
||||
## Remote run: Unable to establish SSH connection
|
||||
Automated ML uses the SSH protocol to communicate with remote DSVMs. This defaults to port 22. Possible causes for this error are:
|
||||
@@ -287,4 +296,4 @@ To resolve this issue, allocate a DSVM with more memory or reduce the value spec
|
||||
|
||||
## Remote run: Iterations show as "Not Responding" in the RunDetails widget.
|
||||
This can be caused by too many concurrent iterations for a remote DSVM. Each concurrent iteration usually takes 100% of a core when it is running. Some iterations can use multiple cores. So, the max_concurrent_iterations setting should always be less than the number of cores of the DSVM.
|
||||
To resolve this issue, try reducing the value specified for the max_concurrent_iterations setting.
|
||||
To resolve this issue, try reducing the value specified for the max_concurrent_iterations setting.
|
||||
|
||||
@@ -2,6 +2,7 @@ name: azure_automl
|
||||
dependencies:
|
||||
# The python interpreter version.
|
||||
# Currently Azure ML only supports 3.5.2 and later.
|
||||
- pip
|
||||
- python>=3.5.2,<3.6.8
|
||||
- nb_conda
|
||||
- matplotlib==2.1.0
|
||||
@@ -12,10 +13,14 @@ dependencies:
|
||||
- scikit-learn>=0.19.0,<=0.20.3
|
||||
- pandas>=0.22.0,<=0.23.4
|
||||
- py-xgboost<=0.80
|
||||
- pyarrow>=0.11.0
|
||||
|
||||
- pip:
|
||||
# Required packages for AzureML execution, history, and data preparation.
|
||||
- azureml-sdk[automl,explain]
|
||||
- azureml-defaults
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- azureml-explain-model
|
||||
- azureml-contrib-explain-model
|
||||
- pandas_ml
|
||||
|
||||
|
||||
@@ -2,6 +2,7 @@ name: azure_automl
|
||||
dependencies:
|
||||
# The python interpreter version.
|
||||
# Currently Azure ML only supports 3.5.2 and later.
|
||||
- pip
|
||||
- nomkl
|
||||
- python>=3.5.2,<3.6.8
|
||||
- nb_conda
|
||||
@@ -13,10 +14,14 @@ dependencies:
|
||||
- scikit-learn>=0.19.0,<=0.20.3
|
||||
- pandas>=0.22.0,<0.23.0
|
||||
- py-xgboost<=0.80
|
||||
- pyarrow>=0.11.0
|
||||
|
||||
- pip:
|
||||
# Required packages for AzureML execution, history, and data preparation.
|
||||
- azureml-sdk[automl,explain]
|
||||
- azureml-defaults
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- azureml-explain-model
|
||||
- azureml-contrib-explain-model
|
||||
- pandas_ml
|
||||
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,10 @@
|
||||
name: auto-ml-classification-bank-marketing
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-defaults
|
||||
- azureml-explain-model
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,10 @@
|
||||
name: auto-ml-classification-credit-card-fraud
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-defaults
|
||||
- azureml-explain-model
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -92,8 +92,6 @@
|
||||
"\n",
|
||||
"# choose a name for experiment\n",
|
||||
"experiment_name = 'automl-classification-deployment'\n",
|
||||
"# project folder\n",
|
||||
"project_folder = './sample_projects/automl-classification-deployment'\n",
|
||||
"\n",
|
||||
"experiment=Experiment(ws, experiment_name)\n",
|
||||
"\n",
|
||||
@@ -103,7 +101,6 @@
|
||||
"output['Workspace'] = ws.name\n",
|
||||
"output['Resource Group'] = ws.resource_group\n",
|
||||
"output['Location'] = ws.location\n",
|
||||
"output['Project Directory'] = project_folder\n",
|
||||
"output['Experiment Name'] = experiment.name\n",
|
||||
"pd.set_option('display.max_colwidth', -1)\n",
|
||||
"outputDf = pd.DataFrame(data = output, index = [''])\n",
|
||||
@@ -126,8 +123,7 @@
|
||||
"|**iterations**|Number of iterations. In each iteration AutoML trains a specific pipeline with the data.|\n",
|
||||
"|**n_cross_validations**|Number of cross validation splits.|\n",
|
||||
"|**X**|(sparse) array-like, shape = [n_samples, n_features]|\n",
|
||||
"|**y**|(sparse) array-like, shape = [n_samples, ], Multi-class targets.|\n",
|
||||
"|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder.|"
|
||||
"|**y**|(sparse) array-like, shape = [n_samples, ], Multi-class targets.|"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -148,8 +144,7 @@
|
||||
" iterations = 10,\n",
|
||||
" verbosity = logging.INFO,\n",
|
||||
" X = X_train, \n",
|
||||
" y = y_train,\n",
|
||||
" path = project_folder)"
|
||||
" y = y_train)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -297,7 +292,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"for p in ['azureml-train-automl', 'azureml-sdk', 'azureml-core']:\n",
|
||||
"for p in ['azureml-train-automl', 'azureml-core']:\n",
|
||||
" print('{}\\t{}'.format(p, dependencies[p]))"
|
||||
]
|
||||
},
|
||||
@@ -310,7 +305,7 @@
|
||||
"from azureml.core.conda_dependencies import CondaDependencies\n",
|
||||
"\n",
|
||||
"myenv = CondaDependencies.create(conda_packages=['numpy','scikit-learn','py-xgboost<=0.80'],\n",
|
||||
" pip_packages=['azureml-sdk[automl]'])\n",
|
||||
" pip_packages=['azureml-train-automl'])\n",
|
||||
"\n",
|
||||
"conda_env_file_name = 'myenv.yml'\n",
|
||||
"myenv.save_to_file('.', conda_env_file_name)"
|
||||
@@ -330,7 +325,7 @@
|
||||
" content = cefr.read()\n",
|
||||
"\n",
|
||||
"with open(conda_env_file_name, 'w') as cefw:\n",
|
||||
" cefw.write(content.replace(azureml.core.VERSION, dependencies['azureml-sdk']))\n",
|
||||
" cefw.write(content.replace(azureml.core.VERSION, dependencies['azureml-train-automl']))\n",
|
||||
"\n",
|
||||
"# Substitute the actual model id in the script file.\n",
|
||||
"\n",
|
||||
|
||||
@@ -0,0 +1,8 @@
|
||||
name: auto-ml-classification-with-deployment
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -29,7 +29,6 @@
|
||||
"1. [Data](#Data)\n",
|
||||
"1. [Train](#Train)\n",
|
||||
"1. [Results](#Results)\n",
|
||||
"1. [Test](#Test)\n",
|
||||
"\n"
|
||||
]
|
||||
},
|
||||
@@ -39,7 +38,7 @@
|
||||
"source": [
|
||||
"## Introduction\n",
|
||||
"\n",
|
||||
"In this example we use the scikit-learn's [digit dataset](http://scikit-learn.org/stable/datasets/index.html#optical-recognition-of-handwritten-digits-dataset) to showcase how you can use AutoML for a simple classification problem.\n",
|
||||
"In this example we use the scikit-learn's [iris dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_iris.html) to showcase how you can use AutoML for a simple classification problem.\n",
|
||||
"\n",
|
||||
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
|
||||
"\n",
|
||||
@@ -49,7 +48,8 @@
|
||||
"1. Create an `Experiment` in an existing `Workspace`.\n",
|
||||
"2. Configure AutoML using `AutoMLConfig`.\n",
|
||||
"3. Train the model using local compute with ONNX compatible config on.\n",
|
||||
"4. Explore the results and save the ONNX model."
|
||||
"4. Explore the results and save the ONNX model.\n",
|
||||
"5. Inference with the ONNX model."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -89,9 +89,8 @@
|
||||
"source": [
|
||||
"ws = Workspace.from_config()\n",
|
||||
"\n",
|
||||
"# Choose a name for the experiment and specify the project folder.\n",
|
||||
"# Choose a name for the experiment.\n",
|
||||
"experiment_name = 'automl-classification-onnx'\n",
|
||||
"project_folder = './sample_projects/automl-classification-onnx'\n",
|
||||
"\n",
|
||||
"experiment = Experiment(ws, experiment_name)\n",
|
||||
"\n",
|
||||
@@ -101,7 +100,6 @@
|
||||
"output['Workspace Name'] = ws.name\n",
|
||||
"output['Resource Group'] = ws.resource_group\n",
|
||||
"output['Location'] = ws.location\n",
|
||||
"output['Project Directory'] = project_folder\n",
|
||||
"output['Experiment Name'] = experiment.name\n",
|
||||
"pd.set_option('display.max_colwidth', -1)\n",
|
||||
"outputDf = pd.DataFrame(data = output, index = [''])\n",
|
||||
@@ -127,9 +125,7 @@
|
||||
"X_train, X_test, y_train, y_test = train_test_split(iris.data, \n",
|
||||
" iris.target, \n",
|
||||
" test_size=0.2, \n",
|
||||
" random_state=0)\n",
|
||||
"\n",
|
||||
"\n"
|
||||
" random_state=0)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -156,11 +152,11 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Train with enable ONNX compatible models config on\n",
|
||||
"## Train\n",
|
||||
"\n",
|
||||
"Instantiate an `AutoMLConfig` object to specify the settings and data used to run the experiment.\n",
|
||||
"\n",
|
||||
"Set the parameter enable_onnx_compatible_models=True, if you also want to generate the ONNX compatible models. Please note, the forecasting task and TensorFlow models are not ONNX compatible yet.\n",
|
||||
"**Note:** Set the parameter enable_onnx_compatible_models=True, if you also want to generate the ONNX compatible models. Please note, the forecasting task and TensorFlow models are not ONNX compatible yet.\n",
|
||||
"\n",
|
||||
"|Property|Description|\n",
|
||||
"|-|-|\n",
|
||||
@@ -170,8 +166,7 @@
|
||||
"|**iterations**|Number of iterations. In each iteration AutoML trains a specific pipeline with the data.|\n",
|
||||
"|**X**|(sparse) array-like, shape = [n_samples, n_features]|\n",
|
||||
"|**y**|(sparse) array-like, shape = [n_samples, ], Multi-class targets.|\n",
|
||||
"|**enable_onnx_compatible_models**|Enable the ONNX compatible models in the experiment.|\n",
|
||||
"|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder.|"
|
||||
"|**enable_onnx_compatible_models**|Enable the ONNX compatible models in the experiment.|"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -196,8 +191,7 @@
|
||||
" X = X_train, \n",
|
||||
" y = y_train,\n",
|
||||
" preprocess=True,\n",
|
||||
" enable_onnx_compatible_models=True,\n",
|
||||
" path = project_folder)"
|
||||
" enable_onnx_compatible_models=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
|
||||
@@ -0,0 +1,9 @@
|
||||
name: auto-ml-classification-with-onnx
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
- onnxruntime
|
||||
@@ -41,7 +41,7 @@
|
||||
"In this example we use the scikit-learn's [digit dataset](http://scikit-learn.org/stable/datasets/index.html#optical-recognition-of-handwritten-digits-dataset) to showcase how you can use AutoML for a simple classification problem.\n",
|
||||
"\n",
|
||||
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
|
||||
"This notebooks shows how can automl can be trained on a a selected list of models,see the readme.md for the models.\n",
|
||||
"This notebooks shows how can automl can be trained on a selected list of models, see the readme.md for the models.\n",
|
||||
"This trains the model exclusively on tensorflow based models.\n",
|
||||
"\n",
|
||||
"In this notebook you will learn how to:\n",
|
||||
@@ -100,9 +100,8 @@
|
||||
"source": [
|
||||
"ws = Workspace.from_config()\n",
|
||||
"\n",
|
||||
"# Choose a name for the experiment and specify the project folder.\n",
|
||||
"# Choose a name for the experiment.\n",
|
||||
"experiment_name = 'automl-local-whitelist'\n",
|
||||
"project_folder = './sample_projects/automl-local-whitelist'\n",
|
||||
"\n",
|
||||
"experiment = Experiment(ws, experiment_name)\n",
|
||||
"\n",
|
||||
@@ -112,7 +111,6 @@
|
||||
"output['Workspace Name'] = ws.name\n",
|
||||
"output['Resource Group'] = ws.resource_group\n",
|
||||
"output['Location'] = ws.location\n",
|
||||
"output['Project Directory'] = project_folder\n",
|
||||
"output['Experiment Name'] = experiment.name\n",
|
||||
"pd.set_option('display.max_colwidth', -1)\n",
|
||||
"outputDf = pd.DataFrame(data = output, index = [''])\n",
|
||||
@@ -158,7 +156,6 @@
|
||||
"|**n_cross_validations**|Number of cross validation splits.|\n",
|
||||
"|**X**|(sparse) array-like, shape = [n_samples, n_features]|\n",
|
||||
"|**y**|(sparse) array-like, shape = [n_samples, ], Multi-class targets.|\n",
|
||||
"|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder.|\n",
|
||||
"|**whitelist_models**|List of models that AutoML should use. The possible values are listed [here](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-configure-auto-train#configure-your-experiment-settings).|"
|
||||
]
|
||||
},
|
||||
@@ -177,8 +174,7 @@
|
||||
" X = X_train, \n",
|
||||
" y = y_train,\n",
|
||||
" enable_tf=True,\n",
|
||||
" whitelist_models=whitelist_models,\n",
|
||||
" path = project_folder)"
|
||||
" whitelist_models=whitelist_models)"
|
||||
]
|
||||
},
|
||||
{
|
||||
|
||||
@@ -0,0 +1,8 @@
|
||||
name: auto-ml-classification-with-whitelisting
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -113,9 +113,8 @@
|
||||
"source": [
|
||||
"ws = Workspace.from_config()\n",
|
||||
"\n",
|
||||
"# Choose a name for the experiment and specify the project folder.\n",
|
||||
"# Choose a name for the experiment.\n",
|
||||
"experiment_name = 'automl-classification'\n",
|
||||
"project_folder = './sample_projects/automl-classification'\n",
|
||||
"\n",
|
||||
"experiment = Experiment(ws, experiment_name)\n",
|
||||
"\n",
|
||||
@@ -125,7 +124,6 @@
|
||||
"output['Workspace Name'] = ws.name\n",
|
||||
"output['Resource Group'] = ws.resource_group\n",
|
||||
"output['Location'] = ws.location\n",
|
||||
"output['Project Directory'] = project_folder\n",
|
||||
"output['Experiment Name'] = experiment.name\n",
|
||||
"pd.set_option('display.max_colwidth', -1)\n",
|
||||
"outputDf = pd.DataFrame(data = output, index = [''])\n",
|
||||
@@ -258,7 +256,11 @@
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"metadata": {
|
||||
"tags": [
|
||||
"widget-rundetails-sample"
|
||||
]
|
||||
},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.widgets import RunDetails\n",
|
||||
|
||||
@@ -0,0 +1,8 @@
|
||||
name: auto-ml-classification
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -21,7 +21,7 @@
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# Automated Machine Learning\n",
|
||||
"_**Prepare Data using `azureml.dataprep` for Remote Execution (AmlCompute)**_\n",
|
||||
"_**Load Data using `TabularDataset` for Remote Execution (AmlCompute)**_\n",
|
||||
"\n",
|
||||
"## Contents\n",
|
||||
"1. [Introduction](#Introduction)\n",
|
||||
@@ -37,23 +37,20 @@
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Introduction\n",
|
||||
"In this example we showcase how you can use the `azureml.dataprep` SDK to load and prepare data for AutoML. `azureml.dataprep` can also be used standalone; full documentation can be found [here](https://github.com/Microsoft/PendletonDocs).\n",
|
||||
"In this example we showcase how you can use AzureML Dataset to load data for AutoML.\n",
|
||||
"\n",
|
||||
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
|
||||
"\n",
|
||||
"In this notebook you will learn how to:\n",
|
||||
"1. Define data loading and preparation steps in a `Dataflow` using `azureml.dataprep`.\n",
|
||||
"2. Pass the `Dataflow` to AutoML for a local run.\n",
|
||||
"3. Pass the `Dataflow` to AutoML for a remote run."
|
||||
"1. Create a `TabularDataset` pointing to the training data.\n",
|
||||
"2. Pass the `TabularDataset` to AutoML for a remote run."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Setup\n",
|
||||
"\n",
|
||||
"Currently, Data Prep only supports __Ubuntu 16__ and __Red Hat Enterprise Linux 7__. We are working on supporting more linux distros."
|
||||
"## Setup"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -70,15 +67,13 @@
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"import logging\n",
|
||||
"import time\n",
|
||||
"\n",
|
||||
"import pandas as pd\n",
|
||||
"\n",
|
||||
"import azureml.core\n",
|
||||
"from azureml.core.compute import DsvmCompute\n",
|
||||
"from azureml.core.experiment import Experiment\n",
|
||||
"from azureml.core.workspace import Workspace\n",
|
||||
"import azureml.dataprep as dprep\n",
|
||||
"from azureml.core.dataset import Dataset\n",
|
||||
"from azureml.train.automl import AutoMLConfig"
|
||||
]
|
||||
},
|
||||
@@ -89,11 +84,9 @@
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"ws = Workspace.from_config()\n",
|
||||
" \n",
|
||||
"\n",
|
||||
"# choose a name for experiment\n",
|
||||
"experiment_name = 'automl-dataprep-remote-dsvm'\n",
|
||||
"# project folder\n",
|
||||
"project_folder = './sample_projects/automl-dataprep-remote-dsvm'\n",
|
||||
"experiment_name = 'automl-dataset-remote-bai'\n",
|
||||
" \n",
|
||||
"experiment = Experiment(ws, experiment_name)\n",
|
||||
" \n",
|
||||
@@ -103,7 +96,6 @@
|
||||
"output['Workspace Name'] = ws.name\n",
|
||||
"output['Resource Group'] = ws.resource_group\n",
|
||||
"output['Location'] = ws.location\n",
|
||||
"output['Project Directory'] = project_folder\n",
|
||||
"output['Experiment Name'] = experiment.name\n",
|
||||
"pd.set_option('display.max_colwidth', -1)\n",
|
||||
"outputDf = pd.DataFrame(data = output, index = [''])\n",
|
||||
@@ -123,35 +115,21 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# You can use `auto_read_file` which intelligently figures out delimiters and datatypes of a file.\n",
|
||||
"# The data referenced here was a 1MB simple random sample of the Chicago Crime data into a local temporary directory.\n",
|
||||
"# You can also use `read_csv` and `to_*` transformations to read (with overridable delimiter)\n",
|
||||
"# and convert column types manually.\n",
|
||||
"example_data = 'https://dprepdata.blob.core.windows.net/demo/crime0-random.csv'\n",
|
||||
"dflow = dprep.auto_read_file(example_data).skip(1) # Remove the header row.\n",
|
||||
"dflow.get_profile()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# As `Primary Type` is our y data, we need to drop the values those are null in this column.\n",
|
||||
"dflow = dflow.drop_nulls('Primary Type')\n",
|
||||
"dflow.head(5)"
|
||||
"dataset = Dataset.Tabular.from_delimited_files(example_data)\n",
|
||||
"dataset.take(5).to_pandas_dataframe()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Review the Data Preparation Result\n",
|
||||
"### Review the data\n",
|
||||
"\n",
|
||||
"You can peek the result of a Dataflow at any range using `skip(i)` and `head(j)`. Doing so evaluates only `j` records for all the steps in the Dataflow, which makes it fast even against large datasets.\n",
|
||||
"You can peek the result of a `TabularDataset` at any range using `skip(i)` and `take(j).to_pandas_dataframe()`. Doing so evaluates only `j` records, which makes it fast even against large datasets.\n",
|
||||
"\n",
|
||||
"`Dataflow` objects are immutable and are composed of a list of data preparation steps. A `Dataflow` object can be branched at any point for further usage."
|
||||
"`TabularDataset` objects are immutable and are composed of a list of subsetting transformations (optional)."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -160,8 +138,8 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"X = dflow.drop_columns(columns=['Primary Type', 'FBI Code'])\n",
|
||||
"y = dflow.keep_columns(columns=['Primary Type'], validate_column_exists=True)"
|
||||
"X = dataset.drop_columns(columns=['Primary Type', 'FBI Code'])\n",
|
||||
"y = dataset.keep_columns(columns=['Primary Type'], validate=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -205,7 +183,7 @@
|
||||
"from azureml.core.compute import ComputeTarget\n",
|
||||
"\n",
|
||||
"# Choose a name for your cluster.\n",
|
||||
"amlcompute_cluster_name = \"cpu-cluster\"\n",
|
||||
"amlcompute_cluster_name = \"automlc2\"\n",
|
||||
"\n",
|
||||
"found = False\n",
|
||||
"\n",
|
||||
@@ -226,11 +204,12 @@
|
||||
" # Create the cluster.\\n\",\n",
|
||||
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, provisioning_config)\n",
|
||||
"\n",
|
||||
" # Can poll for a minimum number of nodes and for a specific timeout.\n",
|
||||
" # If no min_node_count is provided, it will use the scale settings for the cluster.\n",
|
||||
" compute_target.wait_for_completion(show_output = True, min_node_count = None, timeout_in_minutes = 20)\n",
|
||||
"print('Checking cluster status...')\n",
|
||||
"# Can poll for a minimum number of nodes and for a specific timeout.\n",
|
||||
"# If no min_node_count is provided, it will use the scale settings for the cluster.\n",
|
||||
"compute_target.wait_for_completion(show_output = True, min_node_count = None, timeout_in_minutes = 20)\n",
|
||||
"\n",
|
||||
" # For a more detailed view of current AmlCompute status, use get_status()."
|
||||
"# For a more detailed view of current AmlCompute status, use get_status()."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -241,6 +220,7 @@
|
||||
"source": [
|
||||
"from azureml.core.runconfig import RunConfiguration\n",
|
||||
"from azureml.core.conda_dependencies import CondaDependencies\n",
|
||||
"import pkg_resources\n",
|
||||
"\n",
|
||||
"# create a new RunConfig object\n",
|
||||
"conda_run_config = RunConfiguration(framework=\"python\")\n",
|
||||
@@ -248,9 +228,8 @@
|
||||
"# Set compute target to AmlCompute\n",
|
||||
"conda_run_config.target = compute_target\n",
|
||||
"conda_run_config.environment.docker.enabled = True\n",
|
||||
"conda_run_config.environment.docker.base_image = azureml.core.runconfig.DEFAULT_CPU_IMAGE\n",
|
||||
"\n",
|
||||
"cd = CondaDependencies.create(pip_packages=['azureml-sdk[automl]'], conda_packages=['numpy','py-xgboost<=0.80'])\n",
|
||||
"cd = CondaDependencies.create(conda_packages=['numpy','py-xgboost<=0.80'])\n",
|
||||
"conda_run_config.environment.python.conda_dependencies = cd"
|
||||
]
|
||||
},
|
||||
@@ -258,9 +237,9 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Pass Data with `Dataflow` Objects\n",
|
||||
"### Pass Data with `TabularDataset` Objects\n",
|
||||
"\n",
|
||||
"The `Dataflow` objects captured above can also be passed to the `submit` method for a remote run. AutoML will serialize the `Dataflow` object and send it to the remote compute target. The `Dataflow` will not be evaluated locally."
|
||||
"The `TabularDataset` objects captured above can also be passed to the `submit` method for a remote run. AutoML will serialize the `TabularDataset` object and send it to the remote compute target. The `TabularDataset` will not be evaluated locally."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -271,7 +250,6 @@
|
||||
"source": [
|
||||
"automl_config = AutoMLConfig(task = 'classification',\n",
|
||||
" debug_log = 'automl_errors.log',\n",
|
||||
" path = project_folder,\n",
|
||||
" run_configuration=conda_run_config,\n",
|
||||
" X = X,\n",
|
||||
" y = y,\n",
|
||||
@@ -463,8 +441,13 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"dflow_test = dprep.auto_read_file(path='https://dprepdata.blob.core.windows.net/demo/crime0-test.csv').skip(1)\n",
|
||||
"dflow_test = dflow_test.drop_nulls('Primary Type')"
|
||||
"dataset_test = Dataset.Tabular.from_delimited_files(path='https://dprepdata.blob.core.windows.net/demo/crime0-test.csv')\n",
|
||||
"\n",
|
||||
"df_test = dataset_test.to_pandas_dataframe()\n",
|
||||
"df_test = df_test[pd.notnull(df_test['Primary Type'])]\n",
|
||||
"\n",
|
||||
"y_test = df_test[['Primary Type']]\n",
|
||||
"X_test = df_test.drop(['Primary Type', 'FBI Code'], axis=1)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -483,10 +466,6 @@
|
||||
"source": [
|
||||
"from pandas_ml import ConfusionMatrix\n",
|
||||
"\n",
|
||||
"y_test = dflow_test.keep_columns(columns=['Primary Type']).to_pandas_dataframe()\n",
|
||||
"X_test = dflow_test.drop_columns(columns=['Primary Type', 'FBI Code']).to_pandas_dataframe()\n",
|
||||
"\n",
|
||||
"\n",
|
||||
"ypred = fitted_model.predict(X_test)\n",
|
||||
"\n",
|
||||
"cm = ConfusionMatrix(y_test['Primary Type'], ypred)\n",
|
||||
@@ -0,0 +1,10 @@
|
||||
name: auto-ml-dataset-remote-execution
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-defaults
|
||||
- azureml-explain-model
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -1,5 +1,12 @@
|
||||
{
|
||||
"cells": [
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
""
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
@@ -9,19 +16,12 @@
|
||||
"Licensed under the MIT License."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
""
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# Automated Machine Learning\n",
|
||||
"_**Prepare Data using `azureml.dataprep` for Local Execution**_\n",
|
||||
"_**Load Data using `TabularDataset` for Local Execution**_\n",
|
||||
"\n",
|
||||
"## Contents\n",
|
||||
"1. [Introduction](#Introduction)\n",
|
||||
@@ -37,23 +37,20 @@
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Introduction\n",
|
||||
"In this example we showcase how you can use the `azureml.dataprep` SDK to load and prepare data for AutoML. `azureml.dataprep` can also be used standalone; full documentation can be found [here](https://github.com/Microsoft/PendletonDocs).\n",
|
||||
"In this example we showcase how you can use AzureML Dataset to load data for AutoML.\n",
|
||||
"\n",
|
||||
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
|
||||
"\n",
|
||||
"In this notebook you will learn how to:\n",
|
||||
"1. Define data loading and preparation steps in a `Dataflow` using `azureml.dataprep`.\n",
|
||||
"2. Pass the `Dataflow` to AutoML for a local run.\n",
|
||||
"3. Pass the `Dataflow` to AutoML for a remote run."
|
||||
"1. Create a `TabularDataset` pointing to the training data.\n",
|
||||
"2. Pass the `TabularDataset` to AutoML for a local run."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Setup\n",
|
||||
"\n",
|
||||
"Currently, Data Prep only supports __Ubuntu 16__ and __Red Hat Enterprise Linux 7__. We are working on supporting more linux distros."
|
||||
"## Setup"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -76,7 +73,7 @@
|
||||
"import azureml.core\n",
|
||||
"from azureml.core.experiment import Experiment\n",
|
||||
"from azureml.core.workspace import Workspace\n",
|
||||
"import azureml.dataprep as dprep\n",
|
||||
"from azureml.core.dataset import Dataset\n",
|
||||
"from azureml.train.automl import AutoMLConfig"
|
||||
]
|
||||
},
|
||||
@@ -89,9 +86,7 @@
|
||||
"ws = Workspace.from_config()\n",
|
||||
" \n",
|
||||
"# choose a name for experiment\n",
|
||||
"experiment_name = 'automl-dataprep-local'\n",
|
||||
"# project folder\n",
|
||||
"project_folder = './sample_projects/automl-dataprep-local'\n",
|
||||
"experiment_name = 'automl-dataset-local'\n",
|
||||
" \n",
|
||||
"experiment = Experiment(ws, experiment_name)\n",
|
||||
" \n",
|
||||
@@ -101,7 +96,6 @@
|
||||
"output['Workspace Name'] = ws.name\n",
|
||||
"output['Resource Group'] = ws.resource_group\n",
|
||||
"output['Location'] = ws.location\n",
|
||||
"output['Project Directory'] = project_folder\n",
|
||||
"output['Experiment Name'] = experiment.name\n",
|
||||
"pd.set_option('display.max_colwidth', -1)\n",
|
||||
"outputDf = pd.DataFrame(data = output, index = [''])\n",
|
||||
@@ -121,35 +115,21 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# You can use `auto_read_file` which intelligently figures out delimiters and datatypes of a file.\n",
|
||||
"# The data referenced here was a 1MB simple random sample of the Chicago Crime data into a local temporary directory.\n",
|
||||
"# You can also use `read_csv` and `to_*` transformations to read (with overridable delimiter)\n",
|
||||
"# and convert column types manually.\n",
|
||||
"example_data = 'https://dprepdata.blob.core.windows.net/demo/crime0-random.csv'\n",
|
||||
"dflow = dprep.auto_read_file(example_data).skip(1) # Remove the header row.\n",
|
||||
"dflow.get_profile()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# As `Primary Type` is our y data, we need to drop the values those are null in this column.\n",
|
||||
"dflow = dflow.drop_nulls('Primary Type')\n",
|
||||
"dflow.head(5)"
|
||||
"dataset = Dataset.Tabular.from_delimited_files(example_data)\n",
|
||||
"dataset.take(5).to_pandas_dataframe()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Review the Data Preparation Result\n",
|
||||
"### Review the data\n",
|
||||
"\n",
|
||||
"You can peek the result of a Dataflow at any range using `skip(i)` and `head(j)`. Doing so evaluates only `j` records for all the steps in the Dataflow, which makes it fast even against large datasets.\n",
|
||||
"You can peek the result of a `TabularDataset` at any range using `skip(i)` and `take(j).to_pandas_dataframe()`. Doing so evaluates only `j` records, which makes it fast even against large datasets.\n",
|
||||
"\n",
|
||||
"`Dataflow` objects are immutable and are composed of a list of data preparation steps. A `Dataflow` object can be branched at any point for further usage."
|
||||
"`TabularDataset` objects are immutable and are composed of a list of subsetting transformations (optional)."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -158,8 +138,8 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"X = dflow.drop_columns(columns=['Primary Type', 'FBI Code'])\n",
|
||||
"y = dflow.keep_columns(columns=['Primary Type'], validate_column_exists=True)"
|
||||
"X = dataset.drop_columns(columns=['Primary Type', 'FBI Code'])\n",
|
||||
"y = dataset.keep_columns(columns=['Primary Type'], validate=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -190,9 +170,9 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Pass Data with `Dataflow` Objects\n",
|
||||
"### Pass Data with `TabularDataset` Objects\n",
|
||||
"\n",
|
||||
"The `Dataflow` objects captured above can be passed to the `submit` method for a local run. AutoML will retrieve the results from the `Dataflow` for model training."
|
||||
"The `TabularDataset` objects captured above can be passed to the `submit` method for a local run. AutoML will retrieve the results from the `TabularDataset` for model training."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -355,8 +335,13 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"dflow_test = dprep.auto_read_file(path='https://dprepdata.blob.core.windows.net/demo/crime0-test.csv').skip(1)\n",
|
||||
"dflow_test = dflow_test.drop_nulls('Primary Type')"
|
||||
"dataset_test = Dataset.Tabular.from_delimited_files(path='https://dprepdata.blob.core.windows.net/demo/crime0-test.csv')\n",
|
||||
"\n",
|
||||
"df_test = dataset_test.to_pandas_dataframe()\n",
|
||||
"df_test = df_test[pd.notnull(df_test['Primary Type'])]\n",
|
||||
"\n",
|
||||
"y_test = df_test[['Primary Type']]\n",
|
||||
"X_test = df_test.drop(['Primary Type', 'FBI Code'], axis=1)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -375,9 +360,6 @@
|
||||
"source": [
|
||||
"from pandas_ml import ConfusionMatrix\n",
|
||||
"\n",
|
||||
"y_test = dflow_test.keep_columns(columns=['Primary Type']).to_pandas_dataframe()\n",
|
||||
"X_test = dflow_test.drop_columns(columns=['Primary Type', 'FBI Code']).to_pandas_dataframe()\n",
|
||||
"\n",
|
||||
"ypred = fitted_model.predict(X_test)\n",
|
||||
"\n",
|
||||
"cm = ConfusionMatrix(y_test['Primary Type'], ypred)\n",
|
||||
@@ -0,0 +1,8 @@
|
||||
name: auto-ml-dataset
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -197,12 +197,12 @@
|
||||
"display(HTML('<h3>Iterations</h3>'))\n",
|
||||
"RunDetails(ml_run).show() \n",
|
||||
"\n",
|
||||
"children = list(ml_run.get_children())\n",
|
||||
"all_metrics = ml_run.get_metrics(recursive=True)\n",
|
||||
"metricslist = {}\n",
|
||||
"for run in children:\n",
|
||||
" properties = run.get_properties()\n",
|
||||
" metrics = {k: v for k, v in run.get_metrics().items() if isinstance(v, float)}\n",
|
||||
" metricslist[int(properties['iteration'])] = metrics\n",
|
||||
"for run_id, metrics in all_metrics.items():\n",
|
||||
" iteration = int(run_id.split('_')[-1])\n",
|
||||
" float_metrics = {k: v for k, v in metrics.items() if isinstance(v, float)}\n",
|
||||
" metricslist[iteration] = float_metrics\n",
|
||||
"\n",
|
||||
"rundata = pd.DataFrame(metricslist).sort_index(1)\n",
|
||||
"display(HTML('<h3>Metrics</h3>'))\n",
|
||||
|
||||
@@ -0,0 +1,8 @@
|
||||
name: auto-ml-exploring-previous-runs
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -36,19 +36,17 @@
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Introduction\n",
|
||||
"In this example, we show how AutoML can be used for bike share forecasting.\n",
|
||||
"This notebook demonstrates demand forecasting for a bike-sharing service using AutoML.\n",
|
||||
"\n",
|
||||
"The purpose is to demonstrate how to take advantage of the built-in holiday featurization, access the feature names, and further demonstrate how to work with the `forecast` function. Please also look at the additional forecasting notebooks, which document lagging, rolling windows, forecast quantiles, other ways to use the forecast function, and forecaster deployment.\n",
|
||||
"AutoML highlights here include built-in holiday featurization, accessing engineered feature names, and working with the `forecast` function. Please also look at the additional forecasting notebooks, which document lagging, rolling windows, forecast quantiles, other ways to use the forecast function, and forecaster deployment.\n",
|
||||
"\n",
|
||||
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
|
||||
"\n",
|
||||
"In this notebook you would see\n",
|
||||
"Notebook synopsis:\n",
|
||||
"1. Creating an Experiment in an existing Workspace\n",
|
||||
"2. Instantiating AutoMLConfig with new task type \"forecasting\" for timeseries data training, and other timeseries related settings: for this dataset we use the basic one: \"time_column_name\" \n",
|
||||
"3. Training the Model using local compute\n",
|
||||
"4. Exploring the results\n",
|
||||
"5. Viewing the engineered names for featurized data and featurization summary for all raw features\n",
|
||||
"6. Testing the fitted model"
|
||||
"2. Configuration and local run of AutoML for a time-series model with lag and holiday features \n",
|
||||
"3. Viewing the engineered names for featurized data and featurization summary for all raw features\n",
|
||||
"4. Evaluating the fitted model using a rolling test "
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -69,6 +67,9 @@
|
||||
"import numpy as np\n",
|
||||
"import logging\n",
|
||||
"import warnings\n",
|
||||
"\n",
|
||||
"from pandas.tseries.frequencies import to_offset\n",
|
||||
"\n",
|
||||
"# Squash warning messages for cleaner output in the notebook\n",
|
||||
"warnings.showwarning = lambda *args, **kwargs: None\n",
|
||||
"\n",
|
||||
@@ -83,7 +84,7 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"As part of the setup you have already created a <b>Workspace</b>. For AutoML you would need to create an <b>Experiment</b>. An <b>Experiment</b> is a named object in a <b>Workspace</b>, which is used to run experiments."
|
||||
"As part of the setup you have already created a <b>Workspace</b>. To run AutoML, you also need to create an <b>Experiment</b>. An Experiment corresponds to a prediction problem you are trying to solve, while a Run corresponds to a specific approach to the problem."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -96,8 +97,6 @@
|
||||
"\n",
|
||||
"# choose a name for the run history container in the workspace\n",
|
||||
"experiment_name = 'automl-bikeshareforecasting'\n",
|
||||
"# project folder\n",
|
||||
"project_folder = './sample_projects/automl-local-bikeshareforecasting'\n",
|
||||
"\n",
|
||||
"experiment = Experiment(ws, experiment_name)\n",
|
||||
"\n",
|
||||
@@ -107,7 +106,6 @@
|
||||
"output['Workspace'] = ws.name\n",
|
||||
"output['Resource Group'] = ws.resource_group\n",
|
||||
"output['Location'] = ws.location\n",
|
||||
"output['Project Directory'] = project_folder\n",
|
||||
"output['Run History Name'] = experiment_name\n",
|
||||
"pd.set_option('display.max_colwidth', -1)\n",
|
||||
"outputDf = pd.DataFrame(data = output, index = [''])\n",
|
||||
@@ -128,14 +126,15 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"data = pd.read_csv('bike-no.csv', parse_dates=['date'])"
|
||||
"data = pd.read_csv('bike-no.csv', parse_dates=['date'])\n",
|
||||
"data.head()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"Let's set up what we know abou the dataset. \n",
|
||||
"Let's set up what we know about the dataset. \n",
|
||||
"\n",
|
||||
"**Target column** is what we want to forecast.\n",
|
||||
"\n",
|
||||
@@ -193,8 +192,7 @@
|
||||
"source": [
|
||||
"### Setting forecaster maximum horizon \n",
|
||||
"\n",
|
||||
"Assuming your test data forms a full and regular time series(regular time intervals and no holes), \n",
|
||||
"the maximum horizon you will need to forecast is the length of the longest grain in your test set."
|
||||
"The forecast horizon is the number of periods into the future that the model should predict. Here, we set the horizon to 14 periods (i.e. 14 days). Notice that this is much shorter than the number of days in the test set; we will need to use a rolling test to evaluate the performance on the whole test set. For more discussion of forecast horizons and guiding principles for setting them, please see the [energy demand notebook](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/automated-machine-learning/forecasting-energy-demand). "
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -203,10 +201,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"if len(grain_column_names) == 0:\n",
|
||||
" max_horizon = len(X_test)\n",
|
||||
"else:\n",
|
||||
" max_horizon = X_test.groupby(grain_column_names)[time_column_name].count().max()"
|
||||
"max_horizon = 14"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -227,7 +222,8 @@
|
||||
"|**y**|(sparse) array-like, shape = [n_samples, ], targets values.|\n",
|
||||
"|**n_cross_validations**|Number of cross validation splits.|\n",
|
||||
"|**country_or_region**|The country/region used to generate holiday features. These should be ISO 3166 two-letter country/region codes (i.e. 'US', 'GB').|\n",
|
||||
"|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder. "
|
||||
"\n",
|
||||
"This notebook uses the blacklist_models parameter to exclude some models that take a longer time to train on this dataset. You can choose to remove models from the blacklist_models list but you may need to increase the iteration_timeout_minutes parameter value to get results."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -236,26 +232,25 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"time_column_name = 'date'\n",
|
||||
"automl_settings = {\n",
|
||||
" \"time_column_name\": time_column_name,\n",
|
||||
" # these columns are a breakdown of the total and therefore a leak\n",
|
||||
" \"drop_column_names\": ['casual', 'registered'],\n",
|
||||
" 'time_column_name': time_column_name,\n",
|
||||
" 'max_horizon': max_horizon,\n",
|
||||
" # knowing the country/region allows Automated ML to bring in holidays\n",
|
||||
" \"country_or_region\" : 'US',\n",
|
||||
" \"max_horizon\" : max_horizon,\n",
|
||||
" \"target_lags\": 1 \n",
|
||||
" 'country_or_region': 'US',\n",
|
||||
" 'target_lags': 1,\n",
|
||||
" # these columns are a breakdown of the total and therefore a leak\n",
|
||||
" 'drop_column_names': ['casual', 'registered']\n",
|
||||
"}\n",
|
||||
"\n",
|
||||
"automl_config = AutoMLConfig(task = 'forecasting', \n",
|
||||
"automl_config = AutoMLConfig(task='forecasting', \n",
|
||||
" primary_metric='normalized_root_mean_squared_error',\n",
|
||||
" iterations = 10,\n",
|
||||
" iteration_timeout_minutes = 5,\n",
|
||||
" X = X_train,\n",
|
||||
" y = y_train,\n",
|
||||
" n_cross_validations = 3, \n",
|
||||
" path=project_folder,\n",
|
||||
" verbosity = logging.INFO,\n",
|
||||
" blacklist_models = ['ExtremeRandomTrees'],\n",
|
||||
" iterations=10,\n",
|
||||
" iteration_timeout_minutes=5,\n",
|
||||
" X=X_train,\n",
|
||||
" y=y_train,\n",
|
||||
" n_cross_validations=3,\n",
|
||||
" verbosity=logging.INFO,\n",
|
||||
" **automl_settings)"
|
||||
]
|
||||
},
|
||||
@@ -263,7 +258,7 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"We will now run the experiment, starting with 10 iterations of model search. Experiment can be continued for more iterations if the results are not yet good. You will see the currently running iterations printing to the console."
|
||||
"We will now run the experiment, starting with 10 iterations of model search. The experiment can be continued for more iterations if more accurate results are required. You will see the currently running iterations printing to the console."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -348,18 +343,26 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"fitted_model.named_steps['timeseriestransformer'].get_featurization_summary()"
|
||||
"# Get the featurization summary as a list of JSON\n",
|
||||
"featurization_summary = fitted_model.named_steps['timeseriestransformer'].get_featurization_summary()\n",
|
||||
"# View the featurization summary as a pandas dataframe\n",
|
||||
"pd.DataFrame.from_records(featurization_summary)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Test the Best Fitted Model\n",
|
||||
"## Evaluate"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"We now use the best fitted model from the AutoML Run to make forecasts for the test set. \n",
|
||||
"\n",
|
||||
"Predict on training and test set, and calculate residual values.\n",
|
||||
"\n",
|
||||
"We always score on the original dataset whose schema matches the scheme of the training dataset."
|
||||
"We always score on the original dataset whose schema matches the training set schema."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -371,21 +374,12 @@
|
||||
"X_test.head()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"y_query = y_test.copy().astype(np.float)\n",
|
||||
"y_query.fill(np.NaN)\n",
|
||||
"y_fcst, X_trans = fitted_model.forecast(X_test, y_query)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"We now define some functions for aligning output to input and for producing rolling forecasts over the full test set. As previously stated, the forecast horizon of 14 days is shorter than the length of the test set - which is about 120 days. To get predictions over the full test set, we iterate over the test set, making forecasts 14 days at a time and combining the results. We also make sure that each 14-day forecast uses up-to-date actuals - the current context - to construct lag features. \n",
|
||||
"\n",
|
||||
"It is a good practice to always align the output explicitly to the input, as the count and order of the rows may have changed during transformations that span multiple rows."
|
||||
]
|
||||
},
|
||||
@@ -395,7 +389,8 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"def align_outputs(y_predicted, X_trans, X_test, y_test, predicted_column_name = 'predicted'):\n",
|
||||
"def align_outputs(y_predicted, X_trans, X_test, y_test, predicted_column_name='predicted',\n",
|
||||
" horizon_colname='horizon_origin'):\n",
|
||||
" \"\"\"\n",
|
||||
" Demonstrates how to get the output aligned to the inputs\n",
|
||||
" using pandas indexes. Helps understand what happened if\n",
|
||||
@@ -407,7 +402,8 @@
|
||||
" * model was asked to predict past max_horizon -> increase max horizon\n",
|
||||
" * data at start of X_test was needed for lags -> provide previous periods\n",
|
||||
" \"\"\"\n",
|
||||
" df_fcst = pd.DataFrame({predicted_column_name : y_predicted})\n",
|
||||
" df_fcst = pd.DataFrame({predicted_column_name : y_predicted,\n",
|
||||
" horizon_colname: X_trans[horizon_colname]})\n",
|
||||
" # y and X outputs are aligned by forecast() function contract\n",
|
||||
" df_fcst.index = X_trans.index\n",
|
||||
" \n",
|
||||
@@ -426,7 +422,49 @@
|
||||
" clean = together[together[[target_column_name, predicted_column_name]].notnull().all(axis=1)]\n",
|
||||
" return(clean)\n",
|
||||
"\n",
|
||||
"df_all = align_outputs(y_fcst, X_trans, X_test, y_test)\n"
|
||||
"def do_rolling_forecast(fitted_model, X_test, y_test, max_horizon, freq='D'):\n",
|
||||
" \"\"\"\n",
|
||||
" Produce forecasts on a rolling origin over the given test set.\n",
|
||||
" \n",
|
||||
" Each iteration makes a forecast for the next 'max_horizon' periods \n",
|
||||
" with respect to the current origin, then advances the origin by the horizon time duration. \n",
|
||||
" The prediction context for each forecast is set so that the forecaster uses \n",
|
||||
" the actual target values prior to the current origin time for constructing lag features.\n",
|
||||
" \n",
|
||||
" This function returns a concatenated DataFrame of rolling forecasts.\n",
|
||||
" \"\"\"\n",
|
||||
" df_list = []\n",
|
||||
" origin_time = X_test[time_column_name].min()\n",
|
||||
" while origin_time <= X_test[time_column_name].max():\n",
|
||||
" # Set the horizon time - end date of the forecast\n",
|
||||
" horizon_time = origin_time + max_horizon * to_offset(freq)\n",
|
||||
" \n",
|
||||
" # Extract test data from an expanding window up-to the horizon \n",
|
||||
" expand_wind = (X_test[time_column_name] < horizon_time)\n",
|
||||
" X_test_expand = X_test[expand_wind]\n",
|
||||
" y_query_expand = np.zeros(len(X_test_expand)).astype(np.float)\n",
|
||||
" y_query_expand.fill(np.NaN)\n",
|
||||
" \n",
|
||||
" if origin_time != X_test[time_column_name].min():\n",
|
||||
" # Set the context by including actuals up-to the origin time\n",
|
||||
" test_context_expand_wind = (X_test[time_column_name] < origin_time)\n",
|
||||
" context_expand_wind = (X_test_expand[time_column_name] < origin_time)\n",
|
||||
" y_query_expand[context_expand_wind] = y_test[test_context_expand_wind]\n",
|
||||
" \n",
|
||||
" # Make a forecast out to the maximum horizon\n",
|
||||
" y_fcst, X_trans = fitted_model.forecast(X_test_expand, y_query_expand)\n",
|
||||
" \n",
|
||||
" # Align forecast with test set for dates within the current rolling window \n",
|
||||
" trans_tindex = X_trans.index.get_level_values(time_column_name)\n",
|
||||
" trans_roll_wind = (trans_tindex >= origin_time) & (trans_tindex < horizon_time)\n",
|
||||
" test_roll_wind = expand_wind & (X_test[time_column_name] >= origin_time)\n",
|
||||
" df_list.append(align_outputs(y_fcst[trans_roll_wind], X_trans[trans_roll_wind],\n",
|
||||
" X_test[test_roll_wind], y_test[test_roll_wind]))\n",
|
||||
" \n",
|
||||
" # Advance the origin time\n",
|
||||
" origin_time = horizon_time\n",
|
||||
" \n",
|
||||
" return pd.concat(df_list, ignore_index=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -435,6 +473,30 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"df_all = do_rolling_forecast(fitted_model, X_test, y_test, max_horizon)\n",
|
||||
"df_all"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"We now calculate some error metrics for the forecasts and vizualize the predictions vs. the actuals."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"def APE(actual, pred):\n",
|
||||
" \"\"\"\n",
|
||||
" Calculate absolute percentage error.\n",
|
||||
" Returns a vector of APE values with same length as actual/pred.\n",
|
||||
" \"\"\"\n",
|
||||
" return 100*np.abs((actual - pred)/actual)\n",
|
||||
"\n",
|
||||
"def MAPE(actual, pred):\n",
|
||||
" \"\"\"\n",
|
||||
" Calculate mean absolute percentage error.\n",
|
||||
@@ -444,8 +506,7 @@
|
||||
" not_zero = ~np.isclose(actual, 0.0)\n",
|
||||
" actual_safe = actual[not_na & not_zero]\n",
|
||||
" pred_safe = pred[not_na & not_zero]\n",
|
||||
" APE = 100*np.abs((actual_safe - pred_safe)/actual_safe)\n",
|
||||
" return np.mean(APE)"
|
||||
" return np.mean(APE(actual_safe, pred_safe))"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -462,18 +523,63 @@
|
||||
"print('MAPE: %.2f' % MAPE(df_all[target_column_name], df_all['predicted']))\n",
|
||||
"\n",
|
||||
"# Plot outputs\n",
|
||||
"%matplotlib notebook\n",
|
||||
"%matplotlib inline\n",
|
||||
"test_pred = plt.scatter(df_all[target_column_name], df_all['predicted'], color='b')\n",
|
||||
"test_test = plt.scatter(y_test, y_test, color='g')\n",
|
||||
"plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
|
||||
"plt.show()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"The MAPE seems high; it is being skewed by an actual with a small absolute value. For a more informative evaluation, we can calculate the metrics by forecast horizon:"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"df_all.groupby('horizon_origin').apply(\n",
|
||||
" lambda df: pd.Series({'MAPE': MAPE(df[target_column_name], df['predicted']),\n",
|
||||
" 'RMSE': np.sqrt(mean_squared_error(df[target_column_name], df['predicted'])),\n",
|
||||
" 'MAE': mean_absolute_error(df[target_column_name], df['predicted'])}))"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"It's also interesting to see the distributions of APE (absolute percentage error) by horizon. On a log scale, the outlying APE in the horizon-3 group is clear."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"df_all_APE = df_all.assign(APE=APE(df_all[target_column_name], df_all['predicted']))\n",
|
||||
"APEs = [df_all_APE[df_all['horizon_origin'] == h].APE.values for h in range(1, max_horizon + 1)]\n",
|
||||
"\n",
|
||||
"%matplotlib inline\n",
|
||||
"plt.boxplot(APEs)\n",
|
||||
"plt.yscale('log')\n",
|
||||
"plt.xlabel('horizon')\n",
|
||||
"plt.ylabel('APE (%)')\n",
|
||||
"plt.title('Absolute Percentage Errors by Forecast Horizon')\n",
|
||||
"\n",
|
||||
"plt.show()"
|
||||
]
|
||||
}
|
||||
],
|
||||
"metadata": {
|
||||
"authors": [
|
||||
{
|
||||
"name": "xiaga@microsoft.com, tosingli@microsoft.com"
|
||||
"name": "erwright"
|
||||
}
|
||||
],
|
||||
"kernelspec": {
|
||||
@@ -491,7 +597,7 @@
|
||||
"name": "python",
|
||||
"nbconvert_exporter": "python",
|
||||
"pygments_lexer": "ipython3",
|
||||
"version": "3.6.7"
|
||||
"version": "3.6.8"
|
||||
}
|
||||
},
|
||||
"nbformat": 4,
|
||||
|
||||
@@ -0,0 +1,9 @@
|
||||
name: auto-ml-forecasting-bike-share
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
- statsmodels
|
||||
@@ -35,17 +35,16 @@
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Introduction\n",
|
||||
"In this example, we show how AutoML can be used for energy demand forecasting.\n",
|
||||
"In this example, we show how AutoML can be used to forecast a single time-series in the energy demand application area. \n",
|
||||
"\n",
|
||||
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
|
||||
"\n",
|
||||
"In this notebook you would see\n",
|
||||
"Notebook synopsis:\n",
|
||||
"1. Creating an Experiment in an existing Workspace\n",
|
||||
"2. Instantiating AutoMLConfig with new task type \"forecasting\" for timeseries data training, and other timeseries related settings: for this dataset we use the basic one: \"time_column_name\" \n",
|
||||
"3. Training the Model using local compute\n",
|
||||
"4. Exploring the results\n",
|
||||
"5. Viewing the engineered names for featurized data and featurization summary for all raw features\n",
|
||||
"6. Testing the fitted model"
|
||||
"2. Configuration and local run of AutoML for a simple time-series model\n",
|
||||
"3. View engineered features and prediction results\n",
|
||||
"4. Configuration and local run of AutoML for a time-series model with lag and rolling window features\n",
|
||||
"5. Estimate feature importance"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -65,6 +64,10 @@
|
||||
"import pandas as pd\n",
|
||||
"import numpy as np\n",
|
||||
"import logging\n",
|
||||
"import warnings\n",
|
||||
"\n",
|
||||
"# Squash warning messages for cleaner output in the notebook\n",
|
||||
"warnings.showwarning = lambda *args, **kwargs: None\n",
|
||||
"\n",
|
||||
"from azureml.core.workspace import Workspace\n",
|
||||
"from azureml.core.experiment import Experiment\n",
|
||||
@@ -77,7 +80,7 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"As part of the setup you have already created a <b>Workspace</b>. For AutoML you would need to create an <b>Experiment</b>. An <b>Experiment</b> is a named object in a <b>Workspace</b>, which is used to run experiments."
|
||||
"As part of the setup you have already created a <b>Workspace</b>. To run AutoML, you also need to create an <b>Experiment</b>. An Experiment corresponds to a prediction problem you are trying to solve, while a Run corresponds to a specific approach to the problem."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -90,8 +93,6 @@
|
||||
"\n",
|
||||
"# choose a name for the run history container in the workspace\n",
|
||||
"experiment_name = 'automl-energydemandforecasting'\n",
|
||||
"# project folder\n",
|
||||
"project_folder = './sample_projects/automl-local-energydemandforecasting'\n",
|
||||
"\n",
|
||||
"experiment = Experiment(ws, experiment_name)\n",
|
||||
"\n",
|
||||
@@ -101,7 +102,6 @@
|
||||
"output['Workspace'] = ws.name\n",
|
||||
"output['Resource Group'] = ws.resource_group\n",
|
||||
"output['Location'] = ws.location\n",
|
||||
"output['Project Directory'] = project_folder\n",
|
||||
"output['Run History Name'] = experiment_name\n",
|
||||
"pd.set_option('display.max_colwidth', -1)\n",
|
||||
"outputDf = pd.DataFrame(data = output, index = [''])\n",
|
||||
@@ -113,7 +113,7 @@
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Data\n",
|
||||
"Read energy demanding data from file, and preview data."
|
||||
"We will use energy consumption data from New York City for model training. The data is stored in a tabular format and includes energy demand and basic weather data at an hourly frequency. Pandas CSV reader is used to read the file into memory. Special attention is given to the \"timeStamp\" column in the data since it contains text which should be parsed as datetime-type objects. "
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -126,13 +126,20 @@
|
||||
"data.head()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"We must now define the schema of this dataset. Every time-series must have a time column and a target. The target quantity is what will be eventually forecasted by a trained model. In this case, the target is the \"demand\" column. The other columns, \"temp\" and \"precip,\" are implicitly designated as features."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# let's take note of what columns means what in the data\n",
|
||||
"# Dataset schema\n",
|
||||
"time_column_name = 'timeStamp'\n",
|
||||
"target_column_name = 'demand'"
|
||||
]
|
||||
@@ -141,7 +148,14 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Split the data into train and test sets\n"
|
||||
"### Forecast Horizon\n",
|
||||
"\n",
|
||||
"In addition to the data schema, we must also specify the forecast horizon. A forecast horizon is a time span into the future (or just beyond the latest date in the training data) where forecasts of the target quantity are needed. Choosing a forecast horizon is application specific, but a rule-of-thumb is that **the horizon should be the time-frame where you need actionable decisions based on the forecast.** The horizon usually has a strong relationship with the frequency of the time-series data, that is, the sampling interval of the target quantity and the features. For instance, the NYC energy demand data has an hourly frequency. A decision that requires a demand forecast to the hour is unlikely to be made weeks or months in advance, particularly if we expect weather to be a strong determinant of demand. We may have fairly accurate meteorological forecasts of the hourly temperature and precipitation on a the time-scale of a day or two, however.\n",
|
||||
"\n",
|
||||
"Given the above discussion, we generally recommend that users set forecast horizons to less than 100 time periods (i.e. less than 100 hours in the NYC energy example). Furthermore, **AutoML's memory use and computation time increase in proportion to the length of the horizon**, so the user should consider carefully how they set this value. If a long horizon forecast really is necessary, it may be good practice to aggregate the series to a coarser time scale. \n",
|
||||
"\n",
|
||||
"\n",
|
||||
"Forecast horizons in AutoML are given as integer multiples of the time-series frequency. In this example, we set the horizon to 48 hours."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -150,8 +164,32 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"X_train = data[data[time_column_name] < '2017-02-01']\n",
|
||||
"X_test = data[data[time_column_name] >= '2017-02-01']\n",
|
||||
"max_horizon = 48"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Split the data into train and test sets\n",
|
||||
"We now split the data into a train and a test set so that we may evaluate model performance. We note that the tail of the dataset contains a large number of NA values in the target column, so we designate the test set as the 48 hour window ending on the latest date of known energy demand. "
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Find time point to split on\n",
|
||||
"latest_known_time = data[~pd.isnull(data[target_column_name])][time_column_name].max()\n",
|
||||
"split_time = latest_known_time - pd.Timedelta(hours=max_horizon)\n",
|
||||
"\n",
|
||||
"# Split into train/test sets\n",
|
||||
"X_train = data[data[time_column_name] <= split_time]\n",
|
||||
"X_test = data[(data[time_column_name] > split_time) & (data[time_column_name] <= latest_known_time)]\n",
|
||||
"\n",
|
||||
"# Move the target values into their own arrays \n",
|
||||
"y_train = X_train.pop(target_column_name).values\n",
|
||||
"y_test = X_test.pop(target_column_name).values"
|
||||
]
|
||||
@@ -162,7 +200,7 @@
|
||||
"source": [
|
||||
"## Train\n",
|
||||
"\n",
|
||||
"Instantiate a AutoMLConfig object. This defines the settings and data used to run the experiment.\n",
|
||||
"We now instantiate an AutoMLConfig object. This config defines the settings and data used to run the experiment. For forecasting tasks, we must provide extra configuration related to the time-series data schema and forecasting context. Here, only the name of the time column and the maximum forecast horizon are needed. Other settings are described below:\n",
|
||||
"\n",
|
||||
"|Property|Description|\n",
|
||||
"|-|-|\n",
|
||||
@@ -172,8 +210,7 @@
|
||||
"|**iteration_timeout_minutes**|Time limit in minutes for each iteration.|\n",
|
||||
"|**X**|(sparse) array-like, shape = [n_samples, n_features]|\n",
|
||||
"|**y**|(sparse) array-like, shape = [n_samples, ], targets values.|\n",
|
||||
"|**n_cross_validations**|Number of cross validation splits.|\n",
|
||||
"|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder. "
|
||||
"|**n_cross_validations**|Number of cross validation splits. Rolling Origin Validation is used to split time-series in a temporally consistent way.|"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -182,22 +219,22 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"automl_settings = {\n",
|
||||
" \"time_column_name\": time_column_name \n",
|
||||
"time_series_settings = {\n",
|
||||
" 'time_column_name': time_column_name,\n",
|
||||
" 'max_horizon': max_horizon\n",
|
||||
"}\n",
|
||||
"\n",
|
||||
"\n",
|
||||
"automl_config = AutoMLConfig(task = 'forecasting',\n",
|
||||
" debug_log = 'automl_nyc_energy_errors.log',\n",
|
||||
"automl_config = AutoMLConfig(task='forecasting',\n",
|
||||
" debug_log='automl_nyc_energy_errors.log',\n",
|
||||
" primary_metric='normalized_root_mean_squared_error',\n",
|
||||
" iterations = 10,\n",
|
||||
" iteration_timeout_minutes = 5,\n",
|
||||
" X = X_train,\n",
|
||||
" y = y_train,\n",
|
||||
" n_cross_validations = 3,\n",
|
||||
" path=project_folder,\n",
|
||||
" blacklist_models = ['ExtremeRandomTrees'],\n",
|
||||
" iterations=10,\n",
|
||||
" iteration_timeout_minutes=5,\n",
|
||||
" X=X_train,\n",
|
||||
" y=y_train,\n",
|
||||
" n_cross_validations=3,\n",
|
||||
" verbosity = logging.INFO,\n",
|
||||
" **automl_settings)"
|
||||
" **time_series_settings)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -354,7 +391,8 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Calculate accuracy metrics\n"
|
||||
"### Calculate accuracy metrics\n",
|
||||
"Finally, we calculate some accuracy metrics for the forecast and plot the predictions vs. the actuals over the time range in the test set."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -390,10 +428,13 @@
|
||||
"print('MAPE: %.2f' % MAPE(df_all[target_column_name], df_all['predicted']))\n",
|
||||
"\n",
|
||||
"# Plot outputs\n",
|
||||
"%matplotlib notebook\n",
|
||||
"test_pred = plt.scatter(df_all[target_column_name], df_all['predicted'], color='b')\n",
|
||||
"test_test = plt.scatter(y_test, y_test, color='g')\n",
|
||||
"plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
|
||||
"%matplotlib inline\n",
|
||||
"pred, = plt.plot(df_all[time_column_name], df_all['predicted'], color='b')\n",
|
||||
"actual, = plt.plot(df_all[time_column_name], df_all[target_column_name], color='g')\n",
|
||||
"plt.xticks(fontsize=8)\n",
|
||||
"plt.legend((pred, actual), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
|
||||
"plt.title('Prediction vs. Actual Time-Series')\n",
|
||||
"\n",
|
||||
"plt.show()"
|
||||
]
|
||||
},
|
||||
@@ -408,16 +449,18 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Using lags and rolling window features to improve the forecast"
|
||||
"### Using lags and rolling window features"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"We did not use lags in the previous model specification. In effect, the prediction was the result of a simple regression on date, grain and any additional features. This is often a very good prediction as common time series patterns like seasonality and trends can be captured in this manner. Such simple regression is horizon-less: it doesn't matter how far into the future we are predicting, because we are not using past data.\n",
|
||||
"We did not use lags in the previous model specification. In effect, the prediction was the result of a simple regression on date, grain and any additional features. This is often a very good prediction as common time series patterns like seasonality and trends can be captured in this manner. Such simple regression is horizon-less: it doesn't matter how far into the future we are predicting, because we are not using past data. In the previous example, the horizon was only used to split the data for cross-validation.\n",
|
||||
"\n",
|
||||
"Now that we configured target lags, that is the previous values of the target variables, and the prediction is no longer horizon-less. We therefore must specify the `max_horizon` that the model will learn to forecast. The `target_lags` keyword specifies how far back we will construct the lags of the target variable, and the `target_rolling_window_size` specifies the size of the rolling window over which we will generate the `max`, `min` and `sum` features."
|
||||
"Now that we configured target lags, that is the previous values of the target variables, and the prediction is no longer horizon-less. We therefore must still specify the `max_horizon` that the model will learn to forecast. The `target_lags` keyword specifies how far back we will construct the lags of the target variable, and the `target_rolling_window_size` specifies the size of the rolling window over which we will generate the `max`, `min` and `sum` features.\n",
|
||||
"\n",
|
||||
"This notebook uses the blacklist_models parameter to exclude some models that take a longer time to train on this dataset. You can choose to remove models from the blacklist_models list but you may need to increase the iteration_timeout_minutes parameter value to get results."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -426,27 +469,31 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"automl_settings_lags = {\n",
|
||||
"time_series_settings_with_lags = {\n",
|
||||
" 'time_column_name': time_column_name,\n",
|
||||
" 'target_lags': 1,\n",
|
||||
" 'target_rolling_window_size': 5,\n",
|
||||
" # you MUST set the max_horizon when using lags and rolling windows\n",
|
||||
" # it is optional when looking-back features are not used \n",
|
||||
" 'max_horizon': len(y_test), # only one grain\n",
|
||||
" 'max_horizon': max_horizon,\n",
|
||||
" 'target_lags': 12,\n",
|
||||
" 'target_rolling_window_size': 4\n",
|
||||
"}\n",
|
||||
"\n",
|
||||
"\n",
|
||||
"automl_config_lags = AutoMLConfig(task = 'forecasting',\n",
|
||||
" debug_log = 'automl_nyc_energy_errors.log',\n",
|
||||
" primary_metric='normalized_root_mean_squared_error',\n",
|
||||
" iterations = 10,\n",
|
||||
" iteration_timeout_minutes = 5,\n",
|
||||
" X = X_train,\n",
|
||||
" y = y_train,\n",
|
||||
" n_cross_validations = 3,\n",
|
||||
" path=project_folder,\n",
|
||||
" verbosity = logging.INFO,\n",
|
||||
" **automl_settings_lags)"
|
||||
"automl_config_lags = AutoMLConfig(task='forecasting',\n",
|
||||
" debug_log='automl_nyc_energy_errors.log',\n",
|
||||
" primary_metric='normalized_root_mean_squared_error',\n",
|
||||
" blacklist_models=['ElasticNet','ExtremeRandomTrees','GradientBoosting','XGBoostRegressor'],\n",
|
||||
" iterations=10,\n",
|
||||
" iteration_timeout_minutes=10,\n",
|
||||
" X=X_train,\n",
|
||||
" y=y_train,\n",
|
||||
" n_cross_validations=3,\n",
|
||||
" verbosity=logging.INFO,\n",
|
||||
" **time_series_settings_with_lags)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"We now start a new local run, this time with lag and rolling window featurization. AutoML applies featurizations in the setup stage, prior to iterating over ML models. The full training set is featurized first, followed by featurization of each of the CV splits. Lag and rolling window features introduce additional complexity, so the run will take longer than in the previous example that lacked these featurizations."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -493,10 +540,11 @@
|
||||
"print('MAPE: %.2f' % MAPE(df_lags[target_column_name], df_lags['predicted']))\n",
|
||||
"\n",
|
||||
"# Plot outputs\n",
|
||||
"%matplotlib notebook\n",
|
||||
"test_pred = plt.scatter(df_lags[target_column_name], df_lags['predicted'], color='b')\n",
|
||||
"test_test = plt.scatter(y_test, y_test, color='g')\n",
|
||||
"plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
|
||||
"%matplotlib inline\n",
|
||||
"pred, = plt.plot(df_lags[time_column_name], df_lags['predicted'], color='b')\n",
|
||||
"actual, = plt.plot(df_lags[time_column_name], df_lags[target_column_name], color='g')\n",
|
||||
"plt.xticks(fontsize=8)\n",
|
||||
"plt.legend((pred, actual), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
|
||||
"plt.show()"
|
||||
]
|
||||
},
|
||||
@@ -504,7 +552,21 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### What features matter for the forecast?"
|
||||
"### What features matter for the forecast?\n",
|
||||
"The following steps will allow you to compute and visualize engineered feature importance based on your test data for forecasting. "
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"#### Setup the model explanations for AutoML models\n",
|
||||
"The *fitted_model* can generate the following which will be used for getting the engineered and raw feature explanations using *automl_setup_model_explanations*:-\n",
|
||||
"1. Featurized data from train samples/test samples \n",
|
||||
"2. Gather engineered and raw feature name lists\n",
|
||||
"3. Find the classes in your labeled column in classification scenarios\n",
|
||||
"\n",
|
||||
"The *automl_explainer_setup_obj* contains all the structures from above list. "
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -513,14 +575,74 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.train.automl.automlexplainer import explain_model\n",
|
||||
"\n",
|
||||
"# feature names are everything in the transformed data except the target\n",
|
||||
"features = X_trans.columns[:-1]\n",
|
||||
"expl = explain_model(fitted_model, X_train, X_test, features = features, best_run=best_run_lags, y_train = y_train)\n",
|
||||
"# unpack the tuple\n",
|
||||
"shap_values, expected_values, feat_overall_imp, feat_names, per_class_summary, per_class_imp = expl\n",
|
||||
"best_run_lags"
|
||||
"from azureml.train.automl.automl_explain_utilities import AutoMLExplainerSetupClass, automl_setup_model_explanations\n",
|
||||
"automl_explainer_setup_obj = automl_setup_model_explanations(fitted_model, X=X_train.copy(), \n",
|
||||
" X_test=X_test.copy(), y=y_train, \n",
|
||||
" task='forecasting')"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"#### Initialize the Mimic Explainer for feature importance\n",
|
||||
"For explaining the AutoML models, use the *MimicWrapper* from *azureml.explain.model* package. The *MimicWrapper* can be initialized with fields in *automl_explainer_setup_obj*, your workspace and a LightGBM model which acts as a surrogate model to explain the AutoML model (*fitted_model* here). The *MimicWrapper* also takes the *best_run* object where the raw and engineered explanations will be uploaded."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.explain.model.mimic.models.lightgbm_model import LGBMExplainableModel\n",
|
||||
"from azureml.explain.model.mimic_wrapper import MimicWrapper\n",
|
||||
"explainer = MimicWrapper(ws, automl_explainer_setup_obj.automl_estimator, LGBMExplainableModel, \n",
|
||||
" init_dataset=automl_explainer_setup_obj.X_transform, run=best_run,\n",
|
||||
" features=automl_explainer_setup_obj.engineered_feature_names, \n",
|
||||
" feature_maps=[automl_explainer_setup_obj.feature_map])"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"#### Use Mimic Explainer for computing and visualizing engineered feature importance\n",
|
||||
"The *explain()* method in *MimicWrapper* can be called with the transformed test samples to get the feature importance for the generated engineered features. You can also use *ExplanationDashboard* to view the dash board visualization of the feature importance values of the generated engineered features by AutoML featurizers."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"engineered_explanations = explainer.explain(['local', 'global'], eval_dataset=automl_explainer_setup_obj.X_test_transform)\n",
|
||||
"print(engineered_explanations.get_feature_importance_dict())\n",
|
||||
"from azureml.contrib.explain.model.visualize import ExplanationDashboard\n",
|
||||
"ExplanationDashboard(engineered_explanations, automl_explainer_setup_obj.automl_estimator, automl_explainer_setup_obj.X_test_transform)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"#### Use Mimic Explainer for computing and visualizing raw feature importance\n",
|
||||
"The *explain()* method in *MimicWrapper* can be again called with the transformed test samples and setting *get_raw* to *True* to get the feature importance for the raw features. You can also use *ExplanationDashboard* to view the dash board visualization of the feature importance values of the raw features."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"raw_explanations = explainer.explain(['local', 'global'], get_raw=True, \n",
|
||||
" raw_feature_names=automl_explainer_setup_obj.raw_feature_names,\n",
|
||||
" eval_dataset=automl_explainer_setup_obj.X_test_transform)\n",
|
||||
"print(raw_explanations.get_feature_importance_dict())\n",
|
||||
"from azureml.contrib.explain.model.visualize import ExplanationDashboard\n",
|
||||
"ExplanationDashboard(raw_explanations, automl_explainer_setup_obj.automl_pipeline, automl_explainer_setup_obj.X_test_raw)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -536,7 +658,7 @@
|
||||
"metadata": {
|
||||
"authors": [
|
||||
{
|
||||
"name": "xiaga, tosingli"
|
||||
"name": "erwright"
|
||||
}
|
||||
],
|
||||
"kernelspec": {
|
||||
@@ -554,7 +676,7 @@
|
||||
"name": "python",
|
||||
"nbconvert_exporter": "python",
|
||||
"pygments_lexer": "ipython3",
|
||||
"version": "3.6.7"
|
||||
"version": "3.6.8"
|
||||
}
|
||||
},
|
||||
"nbformat": 4,
|
||||
|
||||
@@ -0,0 +1,11 @@
|
||||
name: auto-ml-forecasting-energy-demand
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
- statsmodels
|
||||
- azureml-explain-model
|
||||
- azureml-contrib-explain-model
|
||||
@@ -37,16 +37,10 @@
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Introduction\n",
|
||||
"In this example, we use AutoML to find and tune a time-series forecasting model.\n",
|
||||
"In this example, we use AutoML to train, select, and operationalize a time-series forecasting model for multiple time-series.\n",
|
||||
"\n",
|
||||
"Make sure you have executed the [configuration notebook](../../../configuration.ipynb) before running this notebook.\n",
|
||||
"\n",
|
||||
"In this notebook, you will:\n",
|
||||
"1. Create an Experiment in an existing Workspace\n",
|
||||
"2. Instantiate an AutoMLConfig \n",
|
||||
"3. Find and train a forecasting model using local compute\n",
|
||||
"4. Evaluate the performance of the model\n",
|
||||
"\n",
|
||||
"The examples in the follow code samples use the University of Chicago's Dominick's Finer Foods dataset to forecast orange juice sales. Dominick's was a grocery chain in the Chicago metropolitan area."
|
||||
]
|
||||
},
|
||||
@@ -67,6 +61,10 @@
|
||||
"import pandas as pd\n",
|
||||
"import numpy as np\n",
|
||||
"import logging\n",
|
||||
"import warnings\n",
|
||||
"\n",
|
||||
"# Squash warning messages for cleaner output in the notebook\n",
|
||||
"warnings.showwarning = lambda *args, **kwargs: None\n",
|
||||
"\n",
|
||||
"from azureml.core.workspace import Workspace\n",
|
||||
"from azureml.core.experiment import Experiment\n",
|
||||
@@ -78,7 +76,7 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"As part of the setup you have already created a <b>Workspace</b>. To run AutoML, you also need to create an <b>Experiment</b>. An Experiment is a named object in a Workspace which represents a predictive task, the output of which is a trained model and a set of evaluation metrics for the model. "
|
||||
"As part of the setup you have already created a <b>Workspace</b>. To run AutoML, you also need to create an <b>Experiment</b>. An Experiment corresponds to a prediction problem you are trying to solve, while a Run corresponds to a specific approach to the problem. "
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -91,8 +89,6 @@
|
||||
"\n",
|
||||
"# choose a name for the run history container in the workspace\n",
|
||||
"experiment_name = 'automl-ojforecasting'\n",
|
||||
"# project folder\n",
|
||||
"project_folder = './sample_projects/automl-local-ojforecasting'\n",
|
||||
"\n",
|
||||
"experiment = Experiment(ws, experiment_name)\n",
|
||||
"\n",
|
||||
@@ -102,7 +98,6 @@
|
||||
"output['Workspace'] = ws.name\n",
|
||||
"output['Resource Group'] = ws.resource_group\n",
|
||||
"output['Location'] = ws.location\n",
|
||||
"output['Project Directory'] = project_folder\n",
|
||||
"output['Run History Name'] = experiment_name\n",
|
||||
"pd.set_option('display.max_colwidth', -1)\n",
|
||||
"outputDf = pd.DataFrame(data = output, index = [''])\n",
|
||||
@@ -232,7 +227,7 @@
|
||||
"\n",
|
||||
"For forecasting tasks, there are some additional parameters that can be set: the name of the column holding the date/time, the grain column names, and the maximum forecast horizon. A time column is required for forecasting, while the grain is optional. If a grain is not given, AutoML assumes that the whole dataset is a single time-series. We also pass a list of columns to drop prior to modeling. The _logQuantity_ column is completely correlated with the target quantity, so it must be removed to prevent a target leak.\n",
|
||||
"\n",
|
||||
"The forecast horizon is given in units of the time-series frequency; for instance, the OJ series frequency is weekly, so a horizon of 20 means that a trained model will estimate sales up-to 20 weeks beyond the latest date in the training data for each series. In this example, we set the maximum horizon to the number of samples per series in the test set (n_test_periods). Generally, the value of this parameter will be dictated by business needs. For example, a demand planning organizaion that needs to estimate the next month of sales would set the horizon accordingly. \n",
|
||||
"The forecast horizon is given in units of the time-series frequency; for instance, the OJ series frequency is weekly, so a horizon of 20 means that a trained model will estimate sales up-to 20 weeks beyond the latest date in the training data for each series. In this example, we set the maximum horizon to the number of samples per series in the test set (n_test_periods). Generally, the value of this parameter will be dictated by business needs. For example, a demand planning organizaion that needs to estimate the next month of sales would set the horizon accordingly. Please see the [energy_demand notebook](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/automated-machine-learning/forecasting-energy-demand) for more discussion of forecast horizon.\n",
|
||||
"\n",
|
||||
"Finally, a note about the cross-validation (CV) procedure for time-series data. AutoML uses out-of-sample error estimates to select a best pipeline/model, so it is important that the CV fold splitting is done correctly. Time-series can violate the basic statistical assumptions of the canonical K-Fold CV strategy, so AutoML implements a [rolling origin validation](https://robjhyndman.com/hyndsight/tscv/) procedure to create CV folds for time-series data. To use this procedure, you just need to specify the desired number of CV folds in the AutoMLConfig object. It is also possible to bypass CV and use your own validation set by setting the *X_valid* and *y_valid* parameters of AutoMLConfig.\n",
|
||||
"\n",
|
||||
@@ -246,9 +241,9 @@
|
||||
"|**X**|Training matrix of features as a pandas DataFrame, shape = [n_training_samples, n_features]|\n",
|
||||
"|**y**|Target values as a numpy.ndarray, shape = [n_training_samples, ]|\n",
|
||||
"|**n_cross_validations**|Number of cross-validation folds to use for model/pipeline selection|\n",
|
||||
"|**enable_ensembling**|Allow AutoML to create ensembles of the best performing models\n",
|
||||
"|**enable_voting_ensemble**|Allow AutoML to create a Voting ensemble of the best performing models\n",
|
||||
"|**enable_stack_ensemble**|Allow AutoML to create a Stack ensemble of the best performing models\n",
|
||||
"|**debug_log**|Log file path for writing debugging information\n",
|
||||
"|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder.|\n",
|
||||
"|**time_column_name**|Name of the datetime column in the input data|\n",
|
||||
"|**grain_column_names**|Name(s) of the columns defining individual series in the input data|\n",
|
||||
"|**drop_column_names**|Name(s) of columns to drop prior to modeling|\n",
|
||||
@@ -265,7 +260,7 @@
|
||||
" 'time_column_name': time_column_name,\n",
|
||||
" 'grain_column_names': grain_column_names,\n",
|
||||
" 'drop_column_names': ['logQuantity'],\n",
|
||||
" 'max_horizon': n_test_periods # optional\n",
|
||||
" 'max_horizon': n_test_periods\n",
|
||||
"}\n",
|
||||
"\n",
|
||||
"automl_config = AutoMLConfig(task='forecasting',\n",
|
||||
@@ -274,9 +269,9 @@
|
||||
" iterations=10,\n",
|
||||
" X=X_train,\n",
|
||||
" y=y_train,\n",
|
||||
" n_cross_validations=5,\n",
|
||||
" enable_ensembling=False,\n",
|
||||
" path=project_folder,\n",
|
||||
" n_cross_validations=3,\n",
|
||||
" enable_voting_ensemble=False,\n",
|
||||
" enable_stack_ensemble=False,\n",
|
||||
" verbosity=logging.INFO,\n",
|
||||
" **time_series_settings)"
|
||||
]
|
||||
@@ -320,7 +315,8 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# Predict\n",
|
||||
"# Forecasting\n",
|
||||
"\n",
|
||||
"Now that we have retrieved the best pipeline/model, it can be used to make predictions on test data. First, we remove the target values from the test set:"
|
||||
]
|
||||
},
|
||||
@@ -464,7 +460,7 @@
|
||||
"# Plot outputs\n",
|
||||
"import matplotlib.pyplot as plt\n",
|
||||
"\n",
|
||||
"%matplotlib notebook\n",
|
||||
"%matplotlib inline\n",
|
||||
"test_pred = plt.scatter(df_all[target_column_name], df_all['predicted'], color='b')\n",
|
||||
"test_test = plt.scatter(y_test, y_test, color='g')\n",
|
||||
"plt.legend((test_pred, test_test), ('prediction', 'truth'), loc='upper left', fontsize=8)\n",
|
||||
@@ -664,10 +660,10 @@
|
||||
"conda_env_file_name = 'fcast_env.yml'\n",
|
||||
"\n",
|
||||
"dependencies = ml_run.get_run_sdk_dependencies(iteration = best_iteration)\n",
|
||||
"for p in ['azureml-train-automl', 'azureml-sdk', 'azureml-core']:\n",
|
||||
"for p in ['azureml-train-automl', 'azureml-core']:\n",
|
||||
" print('{}\\t{}'.format(p, dependencies[p]))\n",
|
||||
"\n",
|
||||
"myenv = CondaDependencies.create(conda_packages=['numpy','scikit-learn'], pip_packages=['azureml-sdk[automl]'])\n",
|
||||
"myenv = CondaDependencies.create(conda_packages=['numpy','scikit-learn'], pip_packages=['azureml-train-automl'])\n",
|
||||
"\n",
|
||||
"myenv.save_to_file('.', conda_env_file_name)"
|
||||
]
|
||||
@@ -689,7 +685,7 @@
|
||||
" content = cefr.read()\n",
|
||||
"\n",
|
||||
"with open(conda_env_file_name, 'w') as cefw:\n",
|
||||
" cefw.write(content.replace(azureml.core.VERSION, dependencies['azureml-sdk']))\n",
|
||||
" cefw.write(content.replace(azureml.core.VERSION, dependencies['azureml-train-automl']))\n",
|
||||
"\n",
|
||||
"# Substitute the actual model id in the script file.\n",
|
||||
"\n",
|
||||
@@ -830,7 +826,7 @@
|
||||
"metadata": {
|
||||
"authors": [
|
||||
{
|
||||
"name": "erwright, tosingli"
|
||||
"name": "erwright"
|
||||
}
|
||||
],
|
||||
"kernelspec": {
|
||||
@@ -848,7 +844,7 @@
|
||||
"name": "python",
|
||||
"nbconvert_exporter": "python",
|
||||
"pygments_lexer": "ipython3",
|
||||
"version": "3.6.7"
|
||||
"version": "3.6.8"
|
||||
}
|
||||
},
|
||||
"nbformat": 4,
|
||||
|
||||
@@ -0,0 +1,9 @@
|
||||
name: auto-ml-forecasting-orange-juice-sales
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
- statsmodels
|
||||
@@ -93,7 +93,6 @@
|
||||
"\n",
|
||||
"# Choose a name for the experiment.\n",
|
||||
"experiment_name = 'automl-local-missing-data'\n",
|
||||
"project_folder = './sample_projects/automl-local-missing-data'\n",
|
||||
"\n",
|
||||
"experiment = Experiment(ws, experiment_name)\n",
|
||||
"\n",
|
||||
@@ -103,7 +102,6 @@
|
||||
"output['Workspace'] = ws.name\n",
|
||||
"output['Resource Group'] = ws.resource_group\n",
|
||||
"output['Location'] = ws.location\n",
|
||||
"output['Project Directory'] = project_folder\n",
|
||||
"output['Experiment Name'] = experiment.name\n",
|
||||
"pd.set_option('display.max_colwidth', -1)\n",
|
||||
"outputDf = pd.DataFrame(data = output, index = [''])\n",
|
||||
@@ -166,8 +164,7 @@
|
||||
"|**experiment_exit_score**|*double* value indicating the target for *primary_metric*. <br>Once the target is surpassed the run terminates.|\n",
|
||||
"|**blacklist_models**|*List* of *strings* indicating machine learning algorithms for AutoML to avoid in this run.<br><br> Allowed values for **Classification**<br><i>LogisticRegression</i><br><i>SGD</i><br><i>MultinomialNaiveBayes</i><br><i>BernoulliNaiveBayes</i><br><i>SVM</i><br><i>LinearSVM</i><br><i>KNN</i><br><i>DecisionTree</i><br><i>RandomForest</i><br><i>ExtremeRandomTrees</i><br><i>LightGBM</i><br><i>GradientBoosting</i><br><i>TensorFlowDNN</i><br><i>TensorFlowLinearClassifier</i><br><br>Allowed values for **Regression**<br><i>ElasticNet</i><br><i>GradientBoosting</i><br><i>DecisionTree</i><br><i>KNN</i><br><i>LassoLars</i><br><i>SGD</i><br><i>RandomForest</i><br><i>ExtremeRandomTrees</i><br><i>LightGBM</i><br><i>TensorFlowLinearRegressor</i><br><i>TensorFlowDNN</i>|\n",
|
||||
"|**X**|(sparse) array-like, shape = [n_samples, n_features]|\n",
|
||||
"|**y**|(sparse) array-like, shape = [n_samples, ], Multi-class targets.|\n",
|
||||
"|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder.|"
|
||||
"|**y**|(sparse) array-like, shape = [n_samples, ], Multi-class targets.|"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -186,8 +183,7 @@
|
||||
" blacklist_models = ['KNN','LinearSVM'],\n",
|
||||
" verbosity = logging.INFO,\n",
|
||||
" X = X_train, \n",
|
||||
" y = y_train,\n",
|
||||
" path = project_folder)"
|
||||
" y = y_train)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -360,7 +356,10 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"fitted_model.named_steps['datatransformer'].get_featurization_summary()"
|
||||
"# Get the featurization summary as a list of JSON\n",
|
||||
"featurization_summary = fitted_model.named_steps['datatransformer'].get_featurization_summary()\n",
|
||||
"# View the featurization summary as a pandas dataframe\n",
|
||||
"pd.DataFrame.from_records(featurization_summary)"
|
||||
]
|
||||
},
|
||||
{
|
||||
|
||||
@@ -0,0 +1,8 @@
|
||||
name: auto-ml-missing-data-blacklist-early-termination
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -69,7 +69,8 @@
|
||||
"import azureml.core\n",
|
||||
"from azureml.core.experiment import Experiment\n",
|
||||
"from azureml.core.workspace import Workspace\n",
|
||||
"from azureml.train.automl import AutoMLConfig"
|
||||
"from azureml.train.automl import AutoMLConfig\n",
|
||||
"from azureml.core.dataset import Dataset"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -107,29 +108,42 @@
|
||||
"## Data"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Training Data"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from sklearn import datasets\n",
|
||||
"\n",
|
||||
"iris = datasets.load_iris()\n",
|
||||
"y = iris.target\n",
|
||||
"X = iris.data\n",
|
||||
"\n",
|
||||
"features = iris.feature_names\n",
|
||||
"\n",
|
||||
"from sklearn.model_selection import train_test_split\n",
|
||||
"X_train, X_test, y_train, y_test = train_test_split(X,\n",
|
||||
" y,\n",
|
||||
" test_size=0.1,\n",
|
||||
" random_state=100,\n",
|
||||
" stratify=y)\n",
|
||||
"\n",
|
||||
"X_train = pd.DataFrame(X_train, columns=features)\n",
|
||||
"X_test = pd.DataFrame(X_test, columns=features)"
|
||||
"train_data = \"https://automlsamplenotebookdata.blob.core.windows.net/automl-sample-notebook-data/bankmarketing_train.csv\"\n",
|
||||
"train_dataset = Dataset.Tabular.from_delimited_files(train_data)\n",
|
||||
"X_train = train_dataset.drop_columns(columns=['y']).to_pandas_dataframe()\n",
|
||||
"y_train = train_dataset.keep_columns(columns=['y'], validate=True).to_pandas_dataframe()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Test Data"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"test_data = \"https://automlsamplenotebookdata.blob.core.windows.net/automl-sample-notebook-data/bankmarketing_validate.csv\"\n",
|
||||
"test_dataset = Dataset.Tabular.from_delimited_files(test_data)\n",
|
||||
"X_test = test_dataset.drop_columns(columns=['y']).to_pandas_dataframe()\n",
|
||||
"y_test = test_dataset.keep_columns(columns=['y'], validate=True).to_pandas_dataframe()"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -148,8 +162,6 @@
|
||||
"|**iterations**|Number of iterations. In each iteration Auto ML trains the data with a specific pipeline|\n",
|
||||
"|**X**|(sparse) array-like, shape = [n_samples, n_features]|\n",
|
||||
"|**y**|(sparse) array-like, shape = [n_samples, ], Multi-class targets.|\n",
|
||||
"|**X_valid**|(sparse) array-like, shape = [n_samples, n_features]|\n",
|
||||
"|**y_valid**|(sparse) array-like, shape = [n_samples, ], Multi-class targets.|\n",
|
||||
"|**model_explainability**|Indicate to explain each trained pipeline or not |\n",
|
||||
"|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder. |"
|
||||
]
|
||||
@@ -166,10 +178,10 @@
|
||||
" iteration_timeout_minutes = 200,\n",
|
||||
" iterations = 10,\n",
|
||||
" verbosity = logging.INFO,\n",
|
||||
" preprocess = True,\n",
|
||||
" X = X_train, \n",
|
||||
" y = y_train,\n",
|
||||
" X_valid = X_test,\n",
|
||||
" y_valid = y_test,\n",
|
||||
" n_cross_validations = 5,\n",
|
||||
" model_explainability=True,\n",
|
||||
" path=project_folder)"
|
||||
]
|
||||
@@ -197,7 +209,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"local_run"
|
||||
"best_run, fitted_model = local_run.get_output()"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -302,19 +314,21 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"Beside retrieve the existed model explanation information, explain the model with different train/test data"
|
||||
"### Computing model explanations and visualizing the explanations using azureml-explain-model package\n",
|
||||
"Beside retrieve the existed model explanation information, explain the model with different train/test data. The following steps will allow you to compute and visualize engineered feature importance and raw feature importance based on your test data. "
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.train.automl.automlexplainer import explain_model\n",
|
||||
"#### Setup the model explanations for AutoML models\n",
|
||||
"The *fitted_model* can generate the following which will be used for getting the engineered and raw feature explanations using *automl_setup_model_explanations*:-\n",
|
||||
"1. Featurized data from train samples/test samples \n",
|
||||
"2. Gather engineered and raw feature name lists\n",
|
||||
"3. Find the classes in your labeled column in classification scenarios\n",
|
||||
"\n",
|
||||
"shap_values, expected_values, overall_summary, overall_imp, per_class_summary, per_class_imp = \\\n",
|
||||
" explain_model(fitted_model, X_train, X_test, features=features)"
|
||||
"The *automl_explainer_setup_obj* contains all the structures from above list. "
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -323,8 +337,116 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"print(overall_summary)\n",
|
||||
"print(overall_imp)"
|
||||
"from azureml.train.automl.automl_explain_utilities import AutoMLExplainerSetupClass, automl_setup_model_explanations\n",
|
||||
"\n",
|
||||
"automl_explainer_setup_obj = automl_setup_model_explanations(fitted_model, X=X_train, \n",
|
||||
" X_test=X_test, y=y_train, \n",
|
||||
" task='classification')"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"#### Initialize the Mimic Explainer for feature importance\n",
|
||||
"For explaining the AutoML models, use the *MimicWrapper* from *azureml.explain.model* package. The *MimicWrapper* can be initialized with fields in *automl_explainer_setup_obj*, your workspace and a LightGBM model which acts as a surrogate model to explain the AutoML model (*fitted_model* here). The *MimicWrapper* also takes the *best_run* object where the raw and engineered explanations will be uploaded."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.explain.model.mimic.models.lightgbm_model import LGBMExplainableModel\n",
|
||||
"from azureml.explain.model.mimic_wrapper import MimicWrapper\n",
|
||||
"explainer = MimicWrapper(ws, automl_explainer_setup_obj.automl_estimator, LGBMExplainableModel, \n",
|
||||
" init_dataset=automl_explainer_setup_obj.X_transform, run=best_run,\n",
|
||||
" features=automl_explainer_setup_obj.engineered_feature_names, \n",
|
||||
" feature_maps=[automl_explainer_setup_obj.feature_map],\n",
|
||||
" classes=automl_explainer_setup_obj.classes)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"#### Use Mimic Explainer for computing and visualizing engineered feature importance\n",
|
||||
"The *explain()* method in *MimicWrapper* can be called with the transformed test samples to get the feature importance for the generated engineered features. You can also use *ExplanationDashboard* to view the dash board visualization of the feature importance values of the generated engineered features by AutoML featurizers."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"engineered_explanations = explainer.explain(['local', 'global'], eval_dataset=automl_explainer_setup_obj.X_test_transform)\n",
|
||||
"print(engineered_explanations.get_feature_importance_dict())\n",
|
||||
"from azureml.contrib.explain.model.visualize import ExplanationDashboard\n",
|
||||
"ExplanationDashboard(engineered_explanations, automl_explainer_setup_obj.automl_estimator, automl_explainer_setup_obj.X_test_transform)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"#### Use Mimic Explainer for computing and visualizing raw feature importance\n",
|
||||
"The *explain()* method in *MimicWrapper* can be again called with the transformed test samples and setting *get_raw* to *True* to get the feature importance for the raw features. You can also use *ExplanationDashboard* to view the dash board visualization of the feature importance values of the raw features."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"raw_explanations = explainer.explain(['local', 'global'], get_raw=True, \n",
|
||||
" raw_feature_names=automl_explainer_setup_obj.raw_feature_names,\n",
|
||||
" eval_dataset=automl_explainer_setup_obj.X_test_transform)\n",
|
||||
"print(raw_explanations.get_feature_importance_dict())\n",
|
||||
"from azureml.contrib.explain.model.visualize import ExplanationDashboard\n",
|
||||
"ExplanationDashboard(raw_explanations, automl_explainer_setup_obj.automl_pipeline, automl_explainer_setup_obj.X_test_raw)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"#### Download engineered feature importance from artifact store\n",
|
||||
"You can use *ExplanationClient* to download the engineered feature explanations from the artifact store of the *best_run*."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.explain.model._internal.explanation_client import ExplanationClient\n",
|
||||
"client = ExplanationClient.from_run(best_run)\n",
|
||||
"engineered_explanations = client.download_model_explanation(raw=False)\n",
|
||||
"print(engineered_explanations.get_feature_importance_dict())"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"#### Download raw feature importance from artifact store\n",
|
||||
"You can use *ExplanationClient* to download the raw feature explanations from the artifact store of the *best_run*."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.explain.model._internal.explanation_client import ExplanationClient\n",
|
||||
"client = ExplanationClient.from_run(best_run)\n",
|
||||
"raw_explanations = client.download_model_explanation(raw=True)\n",
|
||||
"print(raw_explanations.get_feature_importance_dict())"
|
||||
]
|
||||
}
|
||||
],
|
||||
|
||||
@@ -0,0 +1,10 @@
|
||||
name: auto-ml-model-explanation
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
- azureml-explain-model
|
||||
- azureml-contrib-explain-model
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,10 @@
|
||||
name: auto-ml-regression-concrete-strength
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-defaults
|
||||
- azureml-explain-model
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,10 @@
|
||||
name: auto-ml-regression-hardware-performance
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-defaults
|
||||
- azureml-explain-model
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -84,9 +84,8 @@
|
||||
"source": [
|
||||
"ws = Workspace.from_config()\n",
|
||||
"\n",
|
||||
"# Choose a name for the experiment and specify the project folder.\n",
|
||||
"# Choose a name for the experiment.\n",
|
||||
"experiment_name = 'automl-local-regression'\n",
|
||||
"project_folder = './sample_projects/automl-local-regression'\n",
|
||||
"\n",
|
||||
"experiment = Experiment(ws, experiment_name)\n",
|
||||
"\n",
|
||||
@@ -96,7 +95,6 @@
|
||||
"output['Workspace Name'] = ws.name\n",
|
||||
"output['Resource Group'] = ws.resource_group\n",
|
||||
"output['Location'] = ws.location\n",
|
||||
"output['Project Directory'] = project_folder\n",
|
||||
"output['Experiment Name'] = experiment.name\n",
|
||||
"pd.set_option('display.max_colwidth', -1)\n",
|
||||
"outputDf = pd.DataFrame(data = output, index = [''])\n",
|
||||
@@ -144,8 +142,7 @@
|
||||
"|**iterations**|Number of iterations. In each iteration AutoML trains a specific pipeline with the data.|\n",
|
||||
"|**n_cross_validations**|Number of cross validation splits.|\n",
|
||||
"|**X**|(sparse) array-like, shape = [n_samples, n_features]|\n",
|
||||
"|**y**|(sparse) array-like, shape = [n_samples, ], targets values.|\n",
|
||||
"|**path**|Relative path to the project folder. AutoML stores configuration files for the experiment under this folder. You can specify a new empty folder.|"
|
||||
"|**y**|(sparse) array-like, shape = [n_samples, ], targets values.|"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -162,8 +159,7 @@
|
||||
" debug_log = 'automl.log',\n",
|
||||
" verbosity = logging.INFO,\n",
|
||||
" X = X_train, \n",
|
||||
" y = y_train,\n",
|
||||
" path = project_folder)"
|
||||
" y = y_train)"
|
||||
]
|
||||
},
|
||||
{
|
||||
|
||||
@@ -0,0 +1,9 @@
|
||||
name: auto-ml-regression
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
- paramiko<2.5.0
|
||||
@@ -0,0 +1,548 @@
|
||||
{
|
||||
"cells": [
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"Copyright (c) Microsoft Corporation. All rights reserved.\n",
|
||||
"\n",
|
||||
"Licensed under the MIT License."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
""
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# Automated Machine Learning\n",
|
||||
"_**Remote Execution using AmlCompute**_\n",
|
||||
"\n",
|
||||
"## Contents\n",
|
||||
"1. [Introduction](#Introduction)\n",
|
||||
"1. [Setup](#Setup)\n",
|
||||
"1. [Data](#Data)\n",
|
||||
"1. [Train](#Train)\n",
|
||||
"1. [Results](#Results)\n"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Introduction\n",
|
||||
"In this example we use the scikit-learn's [iris dataset](http://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_iris.html) to showcase how you can use AutoML for a simple classification problem.\n",
|
||||
"\n",
|
||||
"Make sure you have executed the [configuration](../../../configuration.ipynb) before running this notebook.\n",
|
||||
"\n",
|
||||
"In this notebook you would see\n",
|
||||
"1. Create an `Experiment` in an existing `Workspace`.\n",
|
||||
"2. Create or Attach existing AmlCompute to a workspace.\n",
|
||||
"3. Configure AutoML using `AutoMLConfig`.\n",
|
||||
"4. Train the model using AmlCompute with ONNX compatible config on.\n",
|
||||
"5. Explore the results and save the ONNX model.\n",
|
||||
"6. Inference with the ONNX model.\n",
|
||||
"\n",
|
||||
"In addition this notebook showcases the following features\n",
|
||||
"- **Parallel** executions for iterations\n",
|
||||
"- **Asynchronous** tracking of progress\n",
|
||||
"- **Cancellation** of individual iterations or the entire run\n",
|
||||
"- Retrieving models for any iteration or logged metric\n",
|
||||
"- Specifying AutoML settings as `**kwargs`"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Setup\n",
|
||||
"\n",
|
||||
"As part of the setup you have already created an Azure ML `Workspace` object. For AutoML you will need to create an `Experiment` object, which is a named object in a `Workspace` used to run experiments."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"import logging\n",
|
||||
"import os\n",
|
||||
"\n",
|
||||
"import pandas as pd\n",
|
||||
"from sklearn import datasets\n",
|
||||
"from sklearn.model_selection import train_test_split\n",
|
||||
"\n",
|
||||
"import azureml.core\n",
|
||||
"from azureml.core.experiment import Experiment\n",
|
||||
"from azureml.core.workspace import Workspace\n",
|
||||
"from azureml.core.dataset import Dataset\n",
|
||||
"from azureml.train.automl import AutoMLConfig"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"ws = Workspace.from_config()\n",
|
||||
"\n",
|
||||
"# Choose a name for the run history container in the workspace.\n",
|
||||
"experiment_name = 'automl-remote-amlcompute-with-onnx'\n",
|
||||
"project_folder = './project'\n",
|
||||
"\n",
|
||||
"experiment = Experiment(ws, experiment_name)\n",
|
||||
"\n",
|
||||
"output = {}\n",
|
||||
"output['SDK version'] = azureml.core.VERSION\n",
|
||||
"output['Subscription ID'] = ws.subscription_id\n",
|
||||
"output['Workspace Name'] = ws.name\n",
|
||||
"output['Resource Group'] = ws.resource_group\n",
|
||||
"output['Location'] = ws.location\n",
|
||||
"output['Project Directory'] = project_folder\n",
|
||||
"output['Experiment Name'] = experiment.name\n",
|
||||
"pd.set_option('display.max_colwidth', -1)\n",
|
||||
"outputDf = pd.DataFrame(data = output, index = [''])\n",
|
||||
"outputDf.T"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Create or Attach existing AmlCompute\n",
|
||||
"You will need to create a [compute target](https://docs.microsoft.com/azure/machine-learning/service/concept-azure-machine-learning-architecture#compute-target) for your AutoML run. In this tutorial, you create `AmlCompute` as your training compute resource.\n",
|
||||
"\n",
|
||||
"**Creation of AmlCompute takes approximately 5 minutes.** If the AmlCompute with that name is already in your workspace this code will skip the creation process.\n",
|
||||
"\n",
|
||||
"As with other Azure services, there are limits on certain resources (e.g. AmlCompute) associated with the Azure Machine Learning service. Please read [this article](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-quotas) on the default limits and how to request more quota."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.core.compute import AmlCompute\n",
|
||||
"from azureml.core.compute import ComputeTarget\n",
|
||||
"\n",
|
||||
"# Choose a name for your cluster.\n",
|
||||
"amlcompute_cluster_name = \"automlc2\"\n",
|
||||
"\n",
|
||||
"found = False\n",
|
||||
"# Check if this compute target already exists in the workspace.\n",
|
||||
"cts = ws.compute_targets\n",
|
||||
"if amlcompute_cluster_name in cts and cts[amlcompute_cluster_name].type == 'AmlCompute':\n",
|
||||
" found = True\n",
|
||||
" print('Found existing compute target.')\n",
|
||||
" compute_target = cts[amlcompute_cluster_name]\n",
|
||||
"\n",
|
||||
"if not found:\n",
|
||||
" print('Creating a new compute target...')\n",
|
||||
" provisioning_config = AmlCompute.provisioning_configuration(vm_size = \"STANDARD_D2_V2\", # for GPU, use \"STANDARD_NC6\"\n",
|
||||
" #vm_priority = 'lowpriority', # optional\n",
|
||||
" max_nodes = 6)\n",
|
||||
"\n",
|
||||
" # Create the cluster.\\n\",\n",
|
||||
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, provisioning_config)\n",
|
||||
"\n",
|
||||
"print('Checking cluster status...')\n",
|
||||
"# Can poll for a minimum number of nodes and for a specific timeout.\n",
|
||||
"# If no min_node_count is provided, it will use the scale settings for the cluster.\n",
|
||||
"compute_target.wait_for_completion(show_output = True, min_node_count = None, timeout_in_minutes = 20)\n",
|
||||
"\n",
|
||||
"# For a more detailed view of current AmlCompute status, use get_status()."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Data\n",
|
||||
"For remote executions, you need to make the data accessible from the remote compute.\n",
|
||||
"This can be done by uploading the data to DataStore.\n",
|
||||
"In this example, we upload scikit-learn's [load_iris](https://scikit-learn.org/stable/modules/generated/sklearn.datasets.load_iris.html) data."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"iris = datasets.load_iris()\n",
|
||||
"\n",
|
||||
"if not os.path.isdir('data'):\n",
|
||||
" os.mkdir('data')\n",
|
||||
"\n",
|
||||
"if not os.path.exists(project_folder):\n",
|
||||
" os.makedirs(project_folder)\n",
|
||||
"\n",
|
||||
"X_train, X_test, y_train, y_test = train_test_split(iris.data, \n",
|
||||
" iris.target, \n",
|
||||
" test_size=0.2, \n",
|
||||
" random_state=0)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Ensure the x_train and x_test are pandas DataFrame."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Convert the X_train and X_test to pandas DataFrame and set column names,\n",
|
||||
"# This is needed for initializing the input variable names of ONNX model, \n",
|
||||
"# and the prediction with the ONNX model using the inference helper.\n",
|
||||
"X_train = pd.DataFrame(X_train, columns=['c1', 'c2', 'c3', 'c4'])\n",
|
||||
"X_test = pd.DataFrame(X_test, columns=['c1', 'c2', 'c3', 'c4'])\n",
|
||||
"y_train = pd.DataFrame(y_train, columns=['label'])\n",
|
||||
"\n",
|
||||
"X_train.to_csv(\"data/X_train.csv\", index=False)\n",
|
||||
"y_train.to_csv(\"data/y_train.csv\", index=False)\n",
|
||||
"\n",
|
||||
"ds = ws.get_default_datastore()\n",
|
||||
"ds.upload(src_dir='./data', target_path='irisdata', overwrite=True, show_progress=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.core.runconfig import RunConfiguration\n",
|
||||
"from azureml.core.conda_dependencies import CondaDependencies\n",
|
||||
"import pkg_resources\n",
|
||||
"\n",
|
||||
"# create a new RunConfig object\n",
|
||||
"conda_run_config = RunConfiguration(framework=\"python\")\n",
|
||||
"\n",
|
||||
"# Set compute target to AmlCompute\n",
|
||||
"conda_run_config.target = compute_target\n",
|
||||
"conda_run_config.environment.docker.enabled = True\n",
|
||||
"\n",
|
||||
"cd = CondaDependencies.create(conda_packages=['numpy','py-xgboost<=0.80'])\n",
|
||||
"conda_run_config.environment.python.conda_dependencies = cd"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Creating a TabularDataset\n",
|
||||
"\n",
|
||||
"Defined X and y as `TabularDataset`s, which are passed to automated machine learning in the AutoMLConfig."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"X = Dataset.Tabular.from_delimited_files(path=ds.path('irisdata/X_train.csv'))\n",
|
||||
"y = Dataset.Tabular.from_delimited_files(path=ds.path('irisdata/y_train.csv'))"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Train\n",
|
||||
"\n",
|
||||
"You can specify `automl_settings` as `**kwargs` as well. Also note that you can use a `get_data()` function for local excutions too.\n",
|
||||
"\n",
|
||||
"**Note:** Set the parameter enable_onnx_compatible_models=True, if you also want to generate the ONNX compatible models. Please note, the forecasting task and TensorFlow models are not ONNX compatible yet.\n",
|
||||
"\n",
|
||||
"**Note:** When using AmlCompute, you can't pass Numpy arrays directly to the fit method.\n",
|
||||
"\n",
|
||||
"|Property|Description|\n",
|
||||
"|-|-|\n",
|
||||
"|**primary_metric**|This is the metric that you want to optimize. Classification supports the following primary metrics: <br><i>accuracy</i><br><i>AUC_weighted</i><br><i>average_precision_score_weighted</i><br><i>norm_macro_recall</i><br><i>precision_score_weighted</i>|\n",
|
||||
"|**iteration_timeout_minutes**|Time limit in minutes for each iteration.|\n",
|
||||
"|**iterations**|Number of iterations. In each iteration AutoML trains a specific pipeline with the data.|\n",
|
||||
"|**n_cross_validations**|Number of cross validation splits.|\n",
|
||||
"|**max_concurrent_iterations**|Maximum number of iterations that would be executed in parallel. This should be less than the number of cores on the DSVM.|\n",
|
||||
"|**enable_onnx_compatible_models**|Enable the ONNX compatible models in the experiment.|"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Set the preprocess=True, currently the InferenceHelper only supports this mode."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"automl_settings = {\n",
|
||||
" \"iteration_timeout_minutes\": 10,\n",
|
||||
" \"iterations\": 10,\n",
|
||||
" \"n_cross_validations\": 5,\n",
|
||||
" \"primary_metric\": 'AUC_weighted',\n",
|
||||
" \"preprocess\": True,\n",
|
||||
" \"max_concurrent_iterations\": 5,\n",
|
||||
" \"verbosity\": logging.INFO\n",
|
||||
"}\n",
|
||||
"\n",
|
||||
"automl_config = AutoMLConfig(task = 'classification',\n",
|
||||
" debug_log = 'automl_errors.log',\n",
|
||||
" path = project_folder,\n",
|
||||
" run_configuration=conda_run_config,\n",
|
||||
" X = X,\n",
|
||||
" y = y,\n",
|
||||
" enable_onnx_compatible_models=True, # This will generate ONNX compatible models.\n",
|
||||
" **automl_settings\n",
|
||||
" )"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"Call the `submit` method on the experiment object and pass the run configuration. For remote runs the execution is asynchronous, so you will see the iterations get populated as they complete. You can interact with the widgets and models even when the experiment is running to retrieve the best model up to that point. Once you are satisfied with the model, you can cancel a particular iteration or the whole run.\n",
|
||||
"In this example, we specify `show_output = False` to suppress console output while the run is in progress."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"remote_run = experiment.submit(automl_config, show_output = False)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"remote_run"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Results\n",
|
||||
"\n",
|
||||
"#### Loading executed runs\n",
|
||||
"In case you need to load a previously executed run, enable the cell below and replace the `run_id` value."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "raw",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"remote_run = AutoMLRun(experiment = experiment, run_id = 'AutoML_5db13491-c92a-4f1d-b622-8ab8d973a058')"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"#### Widget for Monitoring Runs\n",
|
||||
"\n",
|
||||
"The widget will first report a \"loading\" status while running the first iteration. After completing the first iteration, an auto-updating graph and table will be shown. The widget will refresh once per minute, so you should see the graph update as child runs complete.\n",
|
||||
"\n",
|
||||
"You can click on a pipeline to see run properties and output logs. Logs are also available on the DSVM under `/tmp/azureml_run/{iterationid}/azureml-logs`\n",
|
||||
"\n",
|
||||
"**Note:** The widget displays a link at the bottom. Use this link to open a web interface to explore the individual run details."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"remote_run"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.widgets import RunDetails\n",
|
||||
"RunDetails(remote_run).show() "
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Wait until the run finishes.\n",
|
||||
"remote_run.wait_for_completion(show_output = True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Cancelling Runs\n",
|
||||
"\n",
|
||||
"You can cancel ongoing remote runs using the `cancel` and `cancel_iteration` functions."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Cancel the ongoing experiment and stop scheduling new iterations.\n",
|
||||
"# remote_run.cancel()\n",
|
||||
"\n",
|
||||
"# Cancel iteration 1 and move onto iteration 2.\n",
|
||||
"# remote_run.cancel_iteration(1)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Retrieve the Best ONNX Model\n",
|
||||
"\n",
|
||||
"Below we select the best pipeline from our iterations. The `get_output` method returns the best run and the fitted model. The Model includes the pipeline and any pre-processing. Overloads on `get_output` allow you to retrieve the best run and fitted model for *any* logged metric or for a particular *iteration*.\n",
|
||||
"\n",
|
||||
"Set the parameter return_onnx_model=True to retrieve the best ONNX model, instead of the Python model."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"best_run, onnx_mdl = remote_run.get_output(return_onnx_model=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Save the best ONNX model"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.automl.core.onnx_convert import OnnxConverter\n",
|
||||
"onnx_fl_path = \"./best_model.onnx\"\n",
|
||||
"OnnxConverter.save_onnx_model(onnx_mdl, onnx_fl_path)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Predict with the ONNX model, using onnxruntime package"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"import sys\n",
|
||||
"import json\n",
|
||||
"from azureml.automl.core.onnx_convert import OnnxConvertConstants\n",
|
||||
"from azureml.train.automl import constants\n",
|
||||
"\n",
|
||||
"if sys.version_info < OnnxConvertConstants.OnnxIncompatiblePythonVersion:\n",
|
||||
" python_version_compatible = True\n",
|
||||
"else:\n",
|
||||
" python_version_compatible = False\n",
|
||||
"\n",
|
||||
"try:\n",
|
||||
" import onnxruntime\n",
|
||||
" from azureml.automl.core.onnx_convert import OnnxInferenceHelper \n",
|
||||
" onnxrt_present = True\n",
|
||||
"except ImportError:\n",
|
||||
" onnxrt_present = False\n",
|
||||
"\n",
|
||||
"def get_onnx_res(run):\n",
|
||||
" res_path = 'onnx_resource.json'\n",
|
||||
" run.download_file(name=constants.MODEL_RESOURCE_PATH_ONNX, output_file_path=res_path)\n",
|
||||
" with open(res_path) as f:\n",
|
||||
" return json.load(f)\n",
|
||||
"\n",
|
||||
"if onnxrt_present and python_version_compatible: \n",
|
||||
" mdl_bytes = onnx_mdl.SerializeToString()\n",
|
||||
" onnx_res = get_onnx_res(best_run)\n",
|
||||
"\n",
|
||||
" onnxrt_helper = OnnxInferenceHelper(mdl_bytes, onnx_res)\n",
|
||||
" pred_onnx, pred_prob_onnx = onnxrt_helper.predict(X_test)\n",
|
||||
"\n",
|
||||
" print(pred_onnx)\n",
|
||||
" print(pred_prob_onnx)\n",
|
||||
"else:\n",
|
||||
" if not python_version_compatible:\n",
|
||||
" print('Please use Python version 3.6 or 3.7 to run the inference helper.') \n",
|
||||
" if not onnxrt_present:\n",
|
||||
" print('Please install the onnxruntime package to do the prediction with ONNX model.')"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": []
|
||||
}
|
||||
],
|
||||
"metadata": {
|
||||
"authors": [
|
||||
{
|
||||
"name": "savitam"
|
||||
}
|
||||
],
|
||||
"kernelspec": {
|
||||
"display_name": "Python 3.6",
|
||||
"language": "python",
|
||||
"name": "python36"
|
||||
},
|
||||
"language_info": {
|
||||
"codemirror_mode": {
|
||||
"name": "ipython",
|
||||
"version": 3
|
||||
},
|
||||
"file_extension": ".py",
|
||||
"mimetype": "text/x-python",
|
||||
"name": "python",
|
||||
"nbconvert_exporter": "python",
|
||||
"pygments_lexer": "ipython3",
|
||||
"version": "3.6.6"
|
||||
}
|
||||
},
|
||||
"nbformat": 4,
|
||||
"nbformat_minor": 2
|
||||
}
|
||||
@@ -0,0 +1,11 @@
|
||||
name: auto-ml-remote-amlcompute-with-onnx
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-defaults
|
||||
- azureml-explain-model
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
- onnxruntime
|
||||
@@ -74,7 +74,6 @@
|
||||
"source": [
|
||||
"import logging\n",
|
||||
"import os\n",
|
||||
"import csv\n",
|
||||
"\n",
|
||||
"from matplotlib import pyplot as plt\n",
|
||||
"import numpy as np\n",
|
||||
@@ -84,6 +83,7 @@
|
||||
"import azureml.core\n",
|
||||
"from azureml.core.experiment import Experiment\n",
|
||||
"from azureml.core.workspace import Workspace\n",
|
||||
"from azureml.core.dataset import Dataset\n",
|
||||
"from azureml.train.automl import AutoMLConfig"
|
||||
]
|
||||
},
|
||||
@@ -136,7 +136,7 @@
|
||||
"from azureml.core.compute import ComputeTarget\n",
|
||||
"\n",
|
||||
"# Choose a name for your cluster.\n",
|
||||
"amlcompute_cluster_name = \"cpu-cluster\"\n",
|
||||
"amlcompute_cluster_name = \"automlc2\"\n",
|
||||
"\n",
|
||||
"found = False\n",
|
||||
"# Check if this compute target already exists in the workspace.\n",
|
||||
@@ -155,11 +155,12 @@
|
||||
" # Create the cluster.\\n\",\n",
|
||||
" compute_target = ComputeTarget.create(ws, amlcompute_cluster_name, provisioning_config)\n",
|
||||
"\n",
|
||||
" # Can poll for a minimum number of nodes and for a specific timeout.\n",
|
||||
" # If no min_node_count is provided, it will use the scale settings for the cluster.\n",
|
||||
" compute_target.wait_for_completion(show_output = True, min_node_count = None, timeout_in_minutes = 20)\n",
|
||||
"print('Checking cluster status...')\n",
|
||||
"# Can poll for a minimum number of nodes and for a specific timeout.\n",
|
||||
"# If no min_node_count is provided, it will use the scale settings for the cluster.\n",
|
||||
"compute_target.wait_for_completion(show_output = True, min_node_count = None, timeout_in_minutes = 20)\n",
|
||||
"\n",
|
||||
" # For a more detailed view of current AmlCompute status, use get_status()."
|
||||
"# For a more detailed view of current AmlCompute status, use get_status()."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -186,18 +187,11 @@
|
||||
"if not os.path.exists(project_folder):\n",
|
||||
" os.makedirs(project_folder)\n",
|
||||
" \n",
|
||||
"pd.DataFrame(data_train.data).to_csv(\"data/X_train.tsv\", index=False, header=False, quoting=csv.QUOTE_ALL, sep=\"\\t\")\n",
|
||||
"pd.DataFrame(data_train.target).to_csv(\"data/y_train.tsv\", index=False, header=False, sep=\"\\t\")\n",
|
||||
"pd.DataFrame(data_train.data[100:,:]).to_csv(\"data/X_train.csv\", index=False)\n",
|
||||
"pd.DataFrame(data_train.target[100:]).to_csv(\"data/y_train.csv\", index=False)\n",
|
||||
"\n",
|
||||
"ds = ws.get_default_datastore()\n",
|
||||
"ds.upload(src_dir='./data', target_path='bai_data', overwrite=True, show_progress=True)\n",
|
||||
"\n",
|
||||
"from azureml.core.runconfig import DataReferenceConfiguration\n",
|
||||
"dr = DataReferenceConfiguration(datastore_name=ds.name, \n",
|
||||
" path_on_datastore='bai_data', \n",
|
||||
" path_on_compute='/tmp/azureml_runs',\n",
|
||||
" mode='download', # download files from datastore to compute target\n",
|
||||
" overwrite=False)"
|
||||
"ds.upload(src_dir='./data', target_path='digitsdata', overwrite=True, show_progress=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -208,6 +202,7 @@
|
||||
"source": [
|
||||
"from azureml.core.runconfig import RunConfiguration\n",
|
||||
"from azureml.core.conda_dependencies import CondaDependencies\n",
|
||||
"import pkg_resources\n",
|
||||
"\n",
|
||||
"# create a new RunConfig object\n",
|
||||
"conda_run_config = RunConfiguration(framework=\"python\")\n",
|
||||
@@ -215,30 +210,28 @@
|
||||
"# Set compute target to AmlCompute\n",
|
||||
"conda_run_config.target = compute_target\n",
|
||||
"conda_run_config.environment.docker.enabled = True\n",
|
||||
"conda_run_config.environment.docker.base_image = azureml.core.runconfig.DEFAULT_CPU_IMAGE\n",
|
||||
"\n",
|
||||
"# set the data reference of the run coonfiguration\n",
|
||||
"conda_run_config.data_references = {ds.name: dr}\n",
|
||||
"\n",
|
||||
"cd = CondaDependencies.create(pip_packages=['azureml-sdk[automl]'], conda_packages=['numpy','py-xgboost<=0.80'])\n",
|
||||
"cd = CondaDependencies.create(conda_packages=['numpy','py-xgboost<=0.80'])\n",
|
||||
"conda_run_config.environment.python.conda_dependencies = cd"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Creating TabularDataset\n",
|
||||
"\n",
|
||||
"Defined X and y as `TabularDataset`s, which are passed to Automated ML in the AutoMLConfig. `from_delimited_files` by default sets the `infer_column_types` to true, which will infer the columns type automatically. If you do wish to manually set the column types, you can set the `set_column_types` argument to manually set the type of each columns."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"%%writefile $project_folder/get_data.py\n",
|
||||
"\n",
|
||||
"import pandas as pd\n",
|
||||
"\n",
|
||||
"def get_data():\n",
|
||||
" X_train = pd.read_csv(\"/tmp/azureml_runs/bai_data/X_train.tsv\", delimiter=\"\\t\", header=None, quotechar='\"')\n",
|
||||
" y_train = pd.read_csv(\"/tmp/azureml_runs/bai_data/y_train.tsv\", delimiter=\"\\t\", header=None, quotechar='\"')\n",
|
||||
"\n",
|
||||
" return { \"X\" : X_train.values, \"y\" : y_train[0].values }\n"
|
||||
"X = Dataset.Tabular.from_delimited_files(path=ds.path('digitsdata/X_train.csv'))\n",
|
||||
"y = Dataset.Tabular.from_delimited_files(path=ds.path('digitsdata/y_train.csv'))"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -280,7 +273,8 @@
|
||||
" debug_log = 'automl_errors.log',\n",
|
||||
" path = project_folder,\n",
|
||||
" run_configuration=conda_run_config,\n",
|
||||
" data_script = project_folder + \"/get_data.py\",\n",
|
||||
" X = X,\n",
|
||||
" y = y,\n",
|
||||
" **automl_settings\n",
|
||||
" )\n"
|
||||
]
|
||||
|
||||
@@ -0,0 +1,10 @@
|
||||
name: auto-ml-remote-amlcompute
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-defaults
|
||||
- azureml-explain-model
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -0,0 +1,8 @@
|
||||
name: auto-ml-sample-weight
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -0,0 +1,8 @@
|
||||
name: auto-ml-sparse-data-train-test-split
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -87,7 +87,7 @@ These instruction setup the integration for SQL Server 2017 on Windows.
|
||||
sudo /opt/mssql/mlservices/bin/python/python -m pip install --upgrade sklearn
|
||||
```
|
||||
7. Start SQL Server.
|
||||
8. Execute the files aml_model.sql, aml_connection.sql, AutoMLGetMetrics.sql, AutoMLPredict.sql and AutoMLTrain.sql in SQL Server Management Studio.
|
||||
8. Execute the files aml_model.sql, aml_connection.sql, AutoMLGetMetrics.sql, AutoMLPredict.sql, AutoMLForecast.sql and AutoMLTrain.sql in SQL Server Management Studio.
|
||||
9. Create an Azure Machine Learning Workspace. You can use the instructions at: [https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-workspace](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-manage-workspace)
|
||||
10. Create a config.json file file using the subscription id, resource group name and workspace name that you use to create the workspace. The file is described at: [https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-configure-environment#workspace](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-configure-environment#workspace)
|
||||
11. Create an Azure service principal. You can do this with the commands:
|
||||
@@ -109,5 +109,5 @@ First you need to load the sample data in the database.
|
||||
|
||||
You can then run the queries in the energy-demand folder:
|
||||
* TrainEnergyDemand.sql runs AutoML, trains multiple models on data and selects the best model.
|
||||
* PredictEnergyDemand.sql predicts based on the most recent training run.
|
||||
* ForecastEnergyDemand.sql forecasts based on the most recent training run.
|
||||
* GetMetrics.sql returns all the metrics for each model in the most recent training run.
|
||||
|
||||
@@ -0,0 +1,23 @@
|
||||
-- This shows using the AutoMLForecast stored procedure to predict using a forecasting model for the nyc_energy dataset.
|
||||
|
||||
DECLARE @Model NVARCHAR(MAX) = (SELECT TOP 1 Model FROM dbo.aml_model
|
||||
WHERE ExperimentName = 'automl-sql-forecast'
|
||||
ORDER BY CreatedDate DESC)
|
||||
|
||||
DECLARE @max_horizon INT = 48
|
||||
DECLARE @split_time NVARCHAR(22) = (SELECT DATEADD(hour, -@max_horizon, MAX(timeStamp)) FROM nyc_energy WHERE demand IS NOT NULL)
|
||||
|
||||
DECLARE @TestDataQuery NVARCHAR(MAX) = '
|
||||
SELECT CAST(timeStamp AS NVARCHAR(30)) AS timeStamp,
|
||||
demand,
|
||||
precip,
|
||||
temp
|
||||
FROM nyc_energy
|
||||
WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL
|
||||
AND timeStamp > ''' + @split_time + ''''
|
||||
|
||||
EXEC dbo.AutoMLForecast @input_query=@TestDataQuery,
|
||||
@label_column='demand',
|
||||
@time_column_name='timeStamp',
|
||||
@model=@model
|
||||
WITH RESULT SETS ((timeStamp DATETIME, grain NVARCHAR(255), predicted_demand FLOAT, precip FLOAT, temp FLOAT, actual_demand FLOAT))
|
||||
@@ -1,21 +1,25 @@
|
||||
-- This shows using the AutoMLTrain stored procedure to create a forecasting model for the nyc_energy dataset.
|
||||
|
||||
INSERT INTO dbo.aml_model(RunId, ExperimentName, Model, LogFileText, WorkspaceName)
|
||||
EXEC dbo.AutoMLTrain @input_query='
|
||||
DECLARE @max_horizon INT = 48
|
||||
DECLARE @split_time NVARCHAR(22) = (SELECT DATEADD(hour, -@max_horizon, MAX(timeStamp)) FROM nyc_energy WHERE demand IS NOT NULL)
|
||||
|
||||
DECLARE @TrainDataQuery NVARCHAR(MAX) = '
|
||||
SELECT CAST(timeStamp as NVARCHAR(30)) as timeStamp,
|
||||
demand,
|
||||
precip,
|
||||
temp,
|
||||
CASE WHEN timeStamp < ''2017-01-01'' THEN 0 ELSE 1 END AS is_validate_column
|
||||
temp
|
||||
FROM nyc_energy
|
||||
WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL
|
||||
and timeStamp < ''2017-02-01''',
|
||||
and timeStamp < ''' + @split_time + ''''
|
||||
|
||||
INSERT INTO dbo.aml_model(RunId, ExperimentName, Model, LogFileText, WorkspaceName)
|
||||
EXEC dbo.AutoMLTrain @input_query= @TrainDataQuery,
|
||||
@label_column='demand',
|
||||
@task='forecasting',
|
||||
@iterations=10,
|
||||
@iteration_timeout_minutes=5,
|
||||
@time_column_name='timeStamp',
|
||||
@is_validate_column='is_validate_column',
|
||||
@max_horizon=@max_horizon,
|
||||
@experiment_name='automl-sql-forecast',
|
||||
@primary_metric='normalized_root_mean_squared_error'
|
||||
|
||||
|
||||
@@ -1,141 +1,141 @@
|
||||
{
|
||||
"cells": [
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# Train a model and use it for prediction\r\n",
|
||||
"\r\n",
|
||||
"Before running this notebook, run the auto-ml-sql-setup.ipynb notebook."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
""
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Set the default database"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"USE [automl]\r\n",
|
||||
"GO"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Use the AutoMLTrain stored procedure to create a forecasting model for the nyc_energy dataset."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"INSERT INTO dbo.aml_model(RunId, ExperimentName, Model, LogFileText, WorkspaceName)\r\n",
|
||||
"EXEC dbo.AutoMLTrain @input_query='\r\n",
|
||||
"SELECT CAST(timeStamp as NVARCHAR(30)) as timeStamp,\r\n",
|
||||
" demand,\r\n",
|
||||
"\t precip,\r\n",
|
||||
"\t temp,\r\n",
|
||||
"\t CASE WHEN timeStamp < ''2017-01-01'' THEN 0 ELSE 1 END AS is_validate_column\r\n",
|
||||
"FROM nyc_energy\r\n",
|
||||
"WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL\r\n",
|
||||
"and timeStamp < ''2017-02-01''',\r\n",
|
||||
"@label_column='demand',\r\n",
|
||||
"@task='forecasting',\r\n",
|
||||
"@iterations=10,\r\n",
|
||||
"@iteration_timeout_minutes=5,\r\n",
|
||||
"@time_column_name='timeStamp',\r\n",
|
||||
"@is_validate_column='is_validate_column',\r\n",
|
||||
"@experiment_name='automl-sql-forecast',\r\n",
|
||||
"@primary_metric='normalized_root_mean_squared_error'"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Use the AutoMLPredict stored procedure to predict using the forecasting model for the nyc_energy dataset."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"DECLARE @Model NVARCHAR(MAX) = (SELECT TOP 1 Model FROM dbo.aml_model\r\n",
|
||||
" WHERE ExperimentName = 'automl-sql-forecast'\r\n",
|
||||
"\t\t\t\t\t\t\t\tORDER BY CreatedDate DESC)\r\n",
|
||||
"\r\n",
|
||||
"EXEC dbo.AutoMLPredict @input_query='\r\n",
|
||||
"SELECT CAST(timeStamp AS NVARCHAR(30)) AS timeStamp,\r\n",
|
||||
" demand,\r\n",
|
||||
"\t precip,\r\n",
|
||||
"\t temp\r\n",
|
||||
"FROM nyc_energy\r\n",
|
||||
"WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL\r\n",
|
||||
"AND timeStamp >= ''2017-02-01''',\r\n",
|
||||
"@label_column='demand',\r\n",
|
||||
"@model=@model\r\n",
|
||||
"WITH RESULT SETS ((timeStamp NVARCHAR(30), actual_demand FLOAT, precip FLOAT, temp FLOAT, predicted_demand FLOAT))"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## List all the metrics for all iterations for the most recent training run."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"DECLARE @RunId NVARCHAR(43)\r\n",
|
||||
"DECLARE @ExperimentName NVARCHAR(255)\r\n",
|
||||
"\r\n",
|
||||
"SELECT TOP 1 @ExperimentName=ExperimentName, @RunId=SUBSTRING(RunId, 1, 43)\r\n",
|
||||
"FROM aml_model\r\n",
|
||||
"ORDER BY CreatedDate DESC\r\n",
|
||||
"\r\n",
|
||||
"EXEC dbo.AutoMLGetMetrics @RunId, @ExperimentName"
|
||||
]
|
||||
}
|
||||
],
|
||||
"metadata": {
|
||||
"authors": [
|
||||
{
|
||||
"name": "jeffshep"
|
||||
}
|
||||
"cells": [
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# Train a model and use it for prediction\r\n",
|
||||
"\r\n",
|
||||
"Before running this notebook, run the auto-ml-sql-setup.ipynb notebook."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
""
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Set the default database"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"USE [automl]\r\n",
|
||||
"GO"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Use the AutoMLTrain stored procedure to create a forecasting model for the nyc_energy dataset."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"INSERT INTO dbo.aml_model(RunId, ExperimentName, Model, LogFileText, WorkspaceName)\r\n",
|
||||
"EXEC dbo.AutoMLTrain @input_query='\r\n",
|
||||
"SELECT CAST(timeStamp as NVARCHAR(30)) as timeStamp,\r\n",
|
||||
" demand,\r\n",
|
||||
"\t precip,\r\n",
|
||||
"\t temp,\r\n",
|
||||
"\t CASE WHEN timeStamp < ''2017-01-01'' THEN 0 ELSE 1 END AS is_validate_column\r\n",
|
||||
"FROM nyc_energy\r\n",
|
||||
"WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL\r\n",
|
||||
"and timeStamp < ''2017-02-01''',\r\n",
|
||||
"@label_column='demand',\r\n",
|
||||
"@task='forecasting',\r\n",
|
||||
"@iterations=10,\r\n",
|
||||
"@iteration_timeout_minutes=5,\r\n",
|
||||
"@time_column_name='timeStamp',\r\n",
|
||||
"@is_validate_column='is_validate_column',\r\n",
|
||||
"@experiment_name='automl-sql-forecast',\r\n",
|
||||
"@primary_metric='normalized_root_mean_squared_error'"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Use the AutoMLPredict stored procedure to predict using the forecasting model for the nyc_energy dataset."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"DECLARE @Model NVARCHAR(MAX) = (SELECT TOP 1 Model FROM dbo.aml_model\r\n",
|
||||
" WHERE ExperimentName = 'automl-sql-forecast'\r\n",
|
||||
"\t\t\t\t\t\t\t\tORDER BY CreatedDate DESC)\r\n",
|
||||
"\r\n",
|
||||
"EXEC dbo.AutoMLPredict @input_query='\r\n",
|
||||
"SELECT CAST(timeStamp AS NVARCHAR(30)) AS timeStamp,\r\n",
|
||||
" demand,\r\n",
|
||||
"\t precip,\r\n",
|
||||
"\t temp\r\n",
|
||||
"FROM nyc_energy\r\n",
|
||||
"WHERE demand IS NOT NULL AND precip IS NOT NULL AND temp IS NOT NULL\r\n",
|
||||
"AND timeStamp >= ''2017-02-01''',\r\n",
|
||||
"@label_column='demand',\r\n",
|
||||
"@model=@model\r\n",
|
||||
"WITH RESULT SETS ((timeStamp NVARCHAR(30), actual_demand FLOAT, precip FLOAT, temp FLOAT, predicted_demand FLOAT))"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## List all the metrics for all iterations for the most recent training run."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"DECLARE @RunId NVARCHAR(43)\r\n",
|
||||
"DECLARE @ExperimentName NVARCHAR(255)\r\n",
|
||||
"\r\n",
|
||||
"SELECT TOP 1 @ExperimentName=ExperimentName, @RunId=SUBSTRING(RunId, 1, 43)\r\n",
|
||||
"FROM aml_model\r\n",
|
||||
"ORDER BY CreatedDate DESC\r\n",
|
||||
"\r\n",
|
||||
"EXEC dbo.AutoMLGetMetrics @RunId, @ExperimentName"
|
||||
]
|
||||
}
|
||||
],
|
||||
"kernelspec": {
|
||||
"display_name": "SQL",
|
||||
"language": "sql",
|
||||
"name": "SQL"
|
||||
"metadata": {
|
||||
"authors": [
|
||||
{
|
||||
"name": "jeffshep"
|
||||
}
|
||||
],
|
||||
"kernelspec": {
|
||||
"display_name": "Python 3.6",
|
||||
"language": "sql",
|
||||
"name": "python36"
|
||||
},
|
||||
"language_info": {
|
||||
"name": "sql",
|
||||
"version": ""
|
||||
}
|
||||
},
|
||||
"language_info": {
|
||||
"name": "sql",
|
||||
"version": ""
|
||||
}
|
||||
},
|
||||
"nbformat": 4,
|
||||
"nbformat_minor": 2
|
||||
}
|
||||
"nbformat": 4,
|
||||
"nbformat_minor": 2
|
||||
}
|
||||
@@ -0,0 +1,92 @@
|
||||
-- This procedure forecast values based on a forecasting model returned by AutoMLTrain.
|
||||
-- It returns a dataset with the forecasted values.
|
||||
SET ANSI_NULLS ON
|
||||
GO
|
||||
SET QUOTED_IDENTIFIER ON
|
||||
GO
|
||||
CREATE OR ALTER PROCEDURE [dbo].[AutoMLForecast]
|
||||
(
|
||||
@input_query NVARCHAR(MAX), -- A SQL query returning data to predict on.
|
||||
@model NVARCHAR(MAX), -- A model returned from AutoMLTrain.
|
||||
@time_column_name NVARCHAR(255)='', -- The name of the timestamp column for forecasting.
|
||||
@label_column NVARCHAR(255)='', -- Optional name of the column from input_query, which should be ignored when predicting
|
||||
@y_query_column NVARCHAR(255)='', -- Optional value column that can be used for predicting.
|
||||
-- If specified, this can contain values for past times (after the model was trained)
|
||||
-- and contain Nan for future times.
|
||||
@forecast_column_name NVARCHAR(255) = 'predicted'
|
||||
-- The name of the output column containing the forecast value.
|
||||
) AS
|
||||
BEGIN
|
||||
|
||||
EXEC sp_execute_external_script @language = N'Python', @script = N'import pandas as pd
|
||||
import azureml.core
|
||||
import numpy as np
|
||||
from azureml.train.automl import AutoMLConfig
|
||||
import pickle
|
||||
import codecs
|
||||
|
||||
model_obj = pickle.loads(codecs.decode(model.encode(), "base64"))
|
||||
|
||||
test_data = input_data.copy()
|
||||
|
||||
if label_column != "" and label_column is not None:
|
||||
y_test = test_data.pop(label_column).values
|
||||
else:
|
||||
y_test = None
|
||||
|
||||
if y_query_column != "" and y_query_column is not None:
|
||||
y_query = test_data.pop(y_query_column).values
|
||||
else:
|
||||
y_query = np.repeat(np.nan, len(test_data))
|
||||
|
||||
X_test = test_data
|
||||
|
||||
if time_column_name != "" and time_column_name is not None:
|
||||
X_test[time_column_name] = pd.to_datetime(X_test[time_column_name])
|
||||
|
||||
y_fcst, X_trans = model_obj.forecast(X_test, y_query)
|
||||
|
||||
def align_outputs(y_forecast, X_trans, X_test, y_test, forecast_column_name):
|
||||
# Demonstrates how to get the output aligned to the inputs
|
||||
# using pandas indexes. Helps understand what happened if
|
||||
# the output shape differs from the input shape, or if
|
||||
# the data got re-sorted by time and grain during forecasting.
|
||||
|
||||
# Typical causes of misalignment are:
|
||||
# * we predicted some periods that were missing in actuals -> drop from eval
|
||||
# * model was asked to predict past max_horizon -> increase max horizon
|
||||
# * data at start of X_test was needed for lags -> provide previous periods
|
||||
|
||||
df_fcst = pd.DataFrame({forecast_column_name : y_forecast})
|
||||
# y and X outputs are aligned by forecast() function contract
|
||||
df_fcst.index = X_trans.index
|
||||
|
||||
# align original X_test to y_test
|
||||
X_test_full = X_test.copy()
|
||||
if y_test is not None:
|
||||
X_test_full[label_column] = y_test
|
||||
|
||||
# X_test_full does not include origin, so reset for merge
|
||||
df_fcst.reset_index(inplace=True)
|
||||
X_test_full = X_test_full.reset_index().drop(columns=''index'')
|
||||
together = df_fcst.merge(X_test_full, how=''right'')
|
||||
|
||||
# drop rows where prediction or actuals are nan
|
||||
# happens because of missing actuals
|
||||
# or at edges of time due to lags/rolling windows
|
||||
clean = together[together[[label_column, forecast_column_name]].notnull().all(axis=1)]
|
||||
return(clean)
|
||||
|
||||
combined_output = align_outputs(y_fcst, X_trans, X_test, y_test, forecast_column_name)
|
||||
|
||||
'
|
||||
, @input_data_1 = @input_query
|
||||
, @input_data_1_name = N'input_data'
|
||||
, @output_data_1_name = N'combined_output'
|
||||
, @params = N'@model NVARCHAR(MAX), @time_column_name NVARCHAR(255), @label_column NVARCHAR(255), @y_query_column NVARCHAR(255), @forecast_column_name NVARCHAR(255)'
|
||||
, @model = @model
|
||||
, @time_column_name = @time_column_name
|
||||
, @label_column = @label_column
|
||||
, @y_query_column = @y_query_column
|
||||
, @forecast_column_name = @forecast_column_name
|
||||
END
|
||||
@@ -69,7 +69,10 @@ CREATE OR ALTER PROCEDURE [dbo].[AutoMLTrain]
|
||||
@is_validate_column NVARCHAR(255)='', -- The name of the column in the result of @input_query that indicates if the row is for training or validation.
|
||||
-- In the values of the column, 0 means for training and 1 means for validation.
|
||||
@time_column_name NVARCHAR(255)='', -- The name of the timestamp column for forecasting.
|
||||
@connection_name NVARCHAR(255)='default' -- The AML connection to use.
|
||||
@connection_name NVARCHAR(255)='default', -- The AML connection to use.
|
||||
@max_horizon INT = 0 -- A forecast horizon is a time span into the future (or just beyond the latest date in the training data)
|
||||
-- where forecasts of the target quantity are needed.
|
||||
-- For example, if data is recorded daily and max_horizon is 5, we will predict 5 days ahead.
|
||||
) AS
|
||||
BEGIN
|
||||
|
||||
@@ -151,8 +154,10 @@ if __name__.startswith("sqlindb"):
|
||||
if time_column_name != "" and time_column_name is not None:
|
||||
automl_settings = { "time_column_name": time_column_name }
|
||||
preprocess = False
|
||||
if max_horizon > 0:
|
||||
automl_settings["max_horizon"] = max_horizon
|
||||
|
||||
log_file_name = "automl_errors.log"
|
||||
log_file_name = "automl_sqlindb_errors.log"
|
||||
|
||||
automl_config = AutoMLConfig(task = task,
|
||||
debug_log = log_file_name,
|
||||
@@ -163,7 +168,6 @@ if __name__.startswith("sqlindb"):
|
||||
n_cross_validations = n_cross_validations,
|
||||
preprocess = preprocess,
|
||||
verbosity = logging.INFO,
|
||||
enable_ensembling = False,
|
||||
X = X_train,
|
||||
y = y_train,
|
||||
path = project_folder,
|
||||
@@ -211,7 +215,8 @@ if __name__.startswith("sqlindb"):
|
||||
@tenantid NVARCHAR(255),
|
||||
@appid NVARCHAR(255),
|
||||
@password NVARCHAR(255),
|
||||
@config_file NVARCHAR(255)'
|
||||
@config_file NVARCHAR(255),
|
||||
@max_horizon INT'
|
||||
, @label_column = @label_column
|
||||
, @primary_metric = @primary_metric
|
||||
, @iterations = @iterations
|
||||
@@ -230,5 +235,6 @@ if __name__.startswith("sqlindb"):
|
||||
, @appid = @appid
|
||||
, @password = @password
|
||||
, @config_file = @config_file
|
||||
, @max_horizon = @max_horizon
|
||||
WITH RESULT SETS ((best_run NVARCHAR(250), experiment_name NVARCHAR(100), fitted_model VARCHAR(MAX), log_file_text NVARCHAR(MAX), workspace NVARCHAR(100)))
|
||||
END
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,8 @@
|
||||
name: auto-ml-subsampling-local
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-train-automl
|
||||
- azureml-widgets
|
||||
- matplotlib
|
||||
- pandas_ml
|
||||
@@ -1,33 +1,73 @@
|
||||
Azure Databricks is a managed Spark offering on Azure and customers already use it for advanced analytics. It provides a collaborative Notebook based environment with CPU or GPU based compute cluster.
|
||||
Azure Databricks is a managed Spark offering on Azure and customers already use it for advanced analytics. It provides a collaborative Notebook based environment with CPU or GPU based compute cluster.
|
||||
|
||||
In this section, you will find sample notebooks on how to use Azure Machine Learning SDK with Azure Databricks. You can train a model using Spark MLlib and then deploy the model to ACI/AKS from within Azure Databricks. You can also use Automated ML capability (**public preview**) of Azure ML SDK with Azure Databricks.
|
||||
In this section, you will find sample notebooks on how to use Azure Machine Learning SDK with Azure Databricks. You can train a model using Spark MLlib and then deploy the model to ACI/AKS from within Azure Databricks. You can also use Automated ML capability (**public preview**) of Azure ML SDK with Azure Databricks.
|
||||
|
||||
- Customers who use Azure Databricks for advanced analytics can now use the same cluster to run experiments with or without automated machine learning.
|
||||
- You can keep the data within the same cluster.
|
||||
- You can leverage the local worker nodes with autoscale and auto termination capabilities.
|
||||
- You can use multiple cores of your Azure Databricks cluster to perform simultenous training.
|
||||
- You can further tune the model generated by automated machine learning if you chose to.
|
||||
- Every run (including the best run) is available as a pipeline, which you can tune further if needed.
|
||||
- Customers who use Azure Databricks for advanced analytics can now use the same cluster to run experiments with or without automated machine learning.
|
||||
- You can keep the data within the same cluster.
|
||||
- You can leverage the local worker nodes with autoscale and auto termination capabilities.
|
||||
- You can use multiple cores of your Azure Databricks cluster to perform simultenous training.
|
||||
- You can further tune the model generated by automated machine learning if you chose to.
|
||||
- Every run (including the best run) is available as a pipeline, which you can tune further if needed.
|
||||
- The model trained using Azure Databricks can be registered in Azure ML SDK workspace and then deployed to Azure managed compute (ACI or AKS) using the Azure Machine learning SDK.
|
||||
|
||||
Please follow our [Azure doc](https://docs.microsoft.com/en-us/azure/machine-learning/service/how-to-configure-environment#azure-databricks) to install the sdk in your Azure Databricks cluster before trying any of the sample notebooks.
|
||||
|
||||
**Single file** -
|
||||
**Single file** -
|
||||
The following archive contains all the sample notebooks. You can the run notebooks after importing [DBC](Databricks_AMLSDK_1-4_6.dbc) in your Databricks workspace instead of downloading individually.
|
||||
|
||||
Notebooks 1-4 have to be run sequentially & are related to Income prediction experiment based on this [dataset](https://archive.ics.uci.edu/ml/datasets/adult) and demonstrate how to data prep, train and operationalize a Spark ML model with Azure ML Python SDK from within Azure Databricks.
|
||||
Notebooks 1-4 have to be run sequentially & are related to Income prediction experiment based on this [dataset](https://archive.ics.uci.edu/ml/datasets/adult) and demonstrate how to data prep, train and operationalize a Spark ML model with Azure ML Python SDK from within Azure Databricks.
|
||||
|
||||
Notebook 6 is an Automated ML sample notebook for Classification.
|
||||
|
||||
Learn more about [how to use Azure Databricks as a development environment](https://docs.microsoft.com/azure/machine-learning/service/how-to-configure-environment#azure-databricks) for Azure Machine Learning service.
|
||||
|
||||
**Databricks as a Compute Target from AML Pipelines**
|
||||
You can use Azure Databricks as a compute target from [Azure Machine Learning Pipelines](https://docs.microsoft.com/en-us/azure/machine-learning/service/concept-ml-pipelines). Take a look at this notebook for details: [aml-pipelines-use-databricks-as-compute-target.ipynb](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/azure-databricks/databricks-as-remote-compute-target/aml-pipelines-use-databricks-as-compute-target.ipynb).
|
||||
**Databricks as a Compute Target from Azure ML Pipelines**
|
||||
You can use Azure Databricks as a compute target from [Azure Machine Learning Pipelines](https://docs.microsoft.com/en-us/azure/machine-learning/service/concept-ml-pipelines). Take a look at this notebook for details: [aml-pipelines-use-databricks-as-compute-target.ipynb](https://github.com/Azure/MachineLearningNotebooks/tree/master/how-to-use-azureml/azure-databricks/databricks-as-remote-compute-target/aml-pipelines-use-databricks-as-compute-target.ipynb).
|
||||
|
||||
# Linked Azure Databricks and Azure Machine Learning Workspaces (Preview)
|
||||
Customers can now link Azure Databricks and AzureML Workspaces to better enable cross-Azure ML scenarios by [managing their tracking data in a single place when using the MLflow client](https://mlflow.org/docs/latest/tracking.html#mlflow-tracking) - the Azure ML workspace.
|
||||
|
||||
## Linking the Workspaces (Admin operation)
|
||||
|
||||
1. The Azure Databricks Azure portal blade now includes a new button to link an Azure ML workspace.
|
||||

|
||||
2. Both a new or existing Azure ML Workspace can be linked in the resulting prompt. Follow any instructions to set up the Azure ML Workspace.
|
||||

|
||||
3. After a successful link operation, you should see the Azure Databricks overview reflect the linked status
|
||||

|
||||
|
||||
## Configure MLflow to send data to Azure ML (All roles)
|
||||
|
||||
1. Add azureml-mlflow as a library to any notebook or cluster that should send data to Azure ML. You can do this via:
|
||||
1. [DBUtils](https://docs.azuredatabricks.net/user-guide/dev-tools/dbutils.html#dbutils-library)
|
||||
```
|
||||
dbutils.library.installPyPI("azureml-mlflow")
|
||||
dbutils.library.restartPython() # Removes Python state
|
||||
```
|
||||
2. [Cluster Libraries](https://docs.azuredatabricks.net/user-guide/libraries.html#install-a-library-on-a-cluster)
|
||||

|
||||
2. [Set the MLflow tracking URI](https://mlflow.org/docs/latest/tracking.html#where-runs-are-recorded) to the following scheme:
|
||||
```
|
||||
adbazureml://${azuremlRegion}.experiments.azureml.net/history/v1.0/subscriptions/${azuremlSubscriptionId}/resourceGroups/${azuremlResourceGroupName}/providers/Microsoft.MachineLearningServices/workspaces/${azuremlWorkspaceName}
|
||||
```
|
||||
1. You can automatically configure this on your clusters for all subsequent notebook sessions using this helper script instead of manually setting the tracking URI in the notebook:
|
||||
* [AzureML Tracking Cluster Init Script](./linking/README.md)
|
||||
3. If configured correctly, you'll now be able to see your MLflow tracking data in both Azure ML (via the REST API and all clients) and Azure Databricks (in the MLflow UI and using the MLflow client)
|
||||
|
||||
|
||||
## Known Preview Limitations
|
||||
While we roll this experience out to customers for feedback, there are some known limitations we'd love comments on in addition to any other issues seen in your workflow.
|
||||
### 1-to-1 Workspace linking
|
||||
Currently, an Azure ML Workspace can only be linked to one Azure Databricks Workspace at a time.
|
||||
### Data synchronization
|
||||
At the moment, data is only generated in the Azure Machine Learning workspace for tracking. Editing tags via the Azure Databricks MLflow UI won't be reflected in the Azure ML UI.
|
||||
### Java and R support
|
||||
The experience currently is only available from the Python MLflow client.
|
||||
|
||||
For more on SDK concepts, please refer to [notebooks](https://github.com/Azure/MachineLearningNotebooks).
|
||||
|
||||
**Please let us know your feedback.**
|
||||
|
||||
|
||||
|
||||

|
||||
|
||||

|
||||
|
||||
@@ -314,25 +314,18 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Load Training Data Using DataPrep"
|
||||
"## Load Training Data Using Dataset"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"Automated ML takes a Dataflow as input.\n",
|
||||
"Automated ML takes a `TabularDataset` as input.\n",
|
||||
"\n",
|
||||
"If you are familiar with Pandas and have done your data preparation work in Pandas already, you can use the `read_pandas_dataframe` method in dprep to convert the DataFrame to a Dataflow.\n",
|
||||
"```python\n",
|
||||
"df = pd.read_csv(...)\n",
|
||||
"# apply some transforms\n",
|
||||
"dprep.read_pandas_dataframe(df, temp_folder='/path/accessible/by/both/driver/and/worker')\n",
|
||||
"```\n",
|
||||
"You are free to use the data preparation libraries/tools of your choice to do the require preparation and once you are done, you can write it to a datastore and create a TabularDataset from it.\n",
|
||||
"\n",
|
||||
"If you just need to ingest data without doing any preparation, you can directly use AzureML Data Prep (Data Prep) to do so. The code below demonstrates this scenario. Data Prep also has data preparation capabilities, we have many [sample notebooks](https://github.com/Microsoft/AMLDataPrepDocs) demonstrating the capabilities.\n",
|
||||
"\n",
|
||||
"You will get the datastore you registered previously and pass it to Data Prep for reading. The data comes from the digits dataset: `sklearn.datasets.load_digits()`. `DataPath` points to a specific location within a datastore. "
|
||||
"You will get the datastore you registered previously and pass it to Dataset for reading. The data comes from the digits dataset: `sklearn.datasets.load_digits()`. `DataPath` points to a specific location within a datastore. "
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -341,21 +334,21 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"import azureml.dataprep as dprep\n",
|
||||
"from azureml.core.dataset import Dataset\n",
|
||||
"from azureml.data.datapath import DataPath\n",
|
||||
"\n",
|
||||
"datastore = Datastore.get(workspace = ws, datastore_name = datastore_name)\n",
|
||||
"\n",
|
||||
"X_train = dprep.read_csv(datastore.path('X.csv'))\n",
|
||||
"y_train = dprep.read_csv(datastore.path('y.csv')).to_long(dprep.ColumnSelector(term='.*', use_regex = True))"
|
||||
"X_train = Dataset.Tabular.from_delimited_files(datastore.path('X.csv'))\n",
|
||||
"y_train = Dataset.Tabular.from_delimited_files(datastore.path('y.csv'))"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Review the Data Preparation Result\n",
|
||||
"You can peek the result of a Dataflow at any range using `skip(i)` and `head(j)`. Doing so evaluates only j records for all the steps in the Dataflow, which makes it fast even against large datasets."
|
||||
"## Review the TabularDataset\n",
|
||||
"You can peek the result of a TabularDataset at any range using `skip(i)` and `take(j).to_pandas_dataframe()`. Doing so evaluates only j records for all the steps in the TabularDataset, which makes it fast even against large datasets."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -364,7 +357,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"X_train.get_profile()"
|
||||
"X_train.take(5).to_pandas_dataframe()"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -373,7 +366,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"y_train.get_profile()"
|
||||
"y_train.take(5).to_pandas_dataframe()"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -593,7 +586,10 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"fitted_model.named_steps['datatransformer'].get_featurization_summary()"
|
||||
"# Get the featurization summary as a list of JSON\n",
|
||||
"featurization_summary = fitted_model.named_steps['datatransformer'].get_featurization_summary()\n",
|
||||
"# View the featurization summary as a pandas dataframe\n",
|
||||
"pd.DataFrame.from_records(featurization_summary)"
|
||||
]
|
||||
},
|
||||
{
|
||||
|
||||
@@ -331,25 +331,18 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Load Training Data Using DataPrep"
|
||||
"## Load Training Data Using Dataset"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"Automated ML takes a Dataflow as input.\n",
|
||||
"Automated ML takes a `TabularDataset` as input.\n",
|
||||
"\n",
|
||||
"If you are familiar with Pandas and have done your data preparation work in Pandas already, you can use the `read_pandas_dataframe` method in dprep to convert the DataFrame to a Dataflow.\n",
|
||||
"```python\n",
|
||||
"df = pd.read_csv(...)\n",
|
||||
"# apply some transforms\n",
|
||||
"dprep.read_pandas_dataframe(df, temp_folder='/path/accessible/by/both/driver/and/worker')\n",
|
||||
"```\n",
|
||||
"You are free to use the data preparation libraries/tools of your choice to do the require preparation and once you are done, you can write it to a datastore and create a TabularDataset from it.\n",
|
||||
"\n",
|
||||
"If you just need to ingest data without doing any preparation, you can directly use AzureML Data Prep (Data Prep) to do so. The code below demonstrates this scenario. Data Prep also has data preparation capabilities, we have many [sample notebooks](https://github.com/Microsoft/AMLDataPrepDocs) demonstrating the capabilities.\n",
|
||||
"\n",
|
||||
"You will get the datastore you registered previously and pass it to Data Prep for reading. The data comes from the digits dataset: `sklearn.datasets.load_digits()`. `DataPath` points to a specific location within a datastore. "
|
||||
"You will get the datastore you registered previously and pass it to Dataset for reading. The data comes from the digits dataset: `sklearn.datasets.load_digits()`. `DataPath` points to a specific location within a datastore. "
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -358,21 +351,21 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"import azureml.dataprep as dprep\n",
|
||||
"from azureml.core.dataset import Dataset\n",
|
||||
"from azureml.data.datapath import DataPath\n",
|
||||
"\n",
|
||||
"datastore = Datastore.get(workspace = ws, datastore_name = datastore_name)\n",
|
||||
"\n",
|
||||
"X_train = dprep.read_csv(datastore.path('X.csv'))\n",
|
||||
"y_train = dprep.read_csv(datastore.path('y.csv')).to_long(dprep.ColumnSelector(term='.*', use_regex = True))"
|
||||
"X_train = Dataset.Tabular.from_delimited_files(datastore.path('X.csv'))\n",
|
||||
"y_train = Dataset.Tabular.from_delimited_files(datastore.path('y.csv'))"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Review the Data Preparation Result\n",
|
||||
"You can peek the result of a Dataflow at any range using skip(i) and head(j). Doing so evaluates only j records for all the steps in the Dataflow, which makes it fast even against large datasets."
|
||||
"## Review the TabularDataset\n",
|
||||
"You can peek the result of a TabularDataset at any range using `skip(i)` and `take(j).to_pandas_dataframe()`. Doing so evaluates only j records for all the steps in the TabularDataset, which makes it fast even against large datasets."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -381,7 +374,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"X_train.get_profile()"
|
||||
"X_train.take(5).to_pandas_dataframe()"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -390,7 +383,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"y_train.get_profile()"
|
||||
"y_train.take(5).to_pandas_dataframe()"
|
||||
]
|
||||
},
|
||||
{
|
||||
|
||||
@@ -13,7 +13,7 @@
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# Using Databricks as a Compute Target from Azure Machine Learning Pipeline\n",
|
||||
"To use Databricks as a compute target from [Azure Machine Learning Pipeline](https://docs.microsoft.com/en-us/azure/machine-learning/service/concept-ml-pipelines), a [DatabricksStep](https://docs.microsoft.com/en-us/python/api/azureml-pipeline-steps/azureml.pipeline.steps.databricks_step.databricksstep?view=azure-ml-py) is used. This notebook demonstrates the use of DatabricksStep in Azure Machine Learning Pipeline.\n",
|
||||
"To use Databricks as a compute target from [Azure Machine Learning Pipeline](https://aka.ms/pl-concept), a [DatabricksStep](https://docs.microsoft.com/en-us/python/api/azureml-pipeline-steps/azureml.pipeline.steps.databricks_step.databricksstep?view=azure-ml-py) is used. This notebook demonstrates the use of DatabricksStep in Azure Machine Learning Pipeline.\n",
|
||||
"\n",
|
||||
"The notebook will show:\n",
|
||||
"1. Running an arbitrary Databricks notebook that the customer has in Databricks workspace\n",
|
||||
@@ -675,7 +675,7 @@
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# Next: ADLA as a Compute Target\n",
|
||||
"To use ADLA as a compute target from Azure Machine Learning Pipeline, a AdlaStep is used. This [notebook](./aml-pipelines-use-adla-as-compute-target.ipynb) demonstrates the use of AdlaStep in Azure Machine Learning Pipeline."
|
||||
"To use ADLA as a compute target from Azure Machine Learning Pipeline, a AdlaStep is used. This [notebook](https://aka.ms/pl-adla) demonstrates the use of AdlaStep in Azure Machine Learning Pipeline."
|
||||
]
|
||||
},
|
||||
{
|
||||
|
||||
BIN
how-to-use-azureml/azure-databricks/img/adb-link-button.png
Executable file
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|
After Width: | Height: | Size: 173 KiB |
BIN
how-to-use-azureml/azure-databricks/img/adb-successful-link.png
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|
After Width: | Height: | Size: 187 KiB |
BIN
how-to-use-azureml/azure-databricks/img/cluster-library.png
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how-to-use-azureml/azure-databricks/img/cluster-library.png
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|
After Width: | Height: | Size: 84 KiB |
BIN
how-to-use-azureml/azure-databricks/img/link-prompt.png
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|
After Width: | Height: | Size: 111 KiB |
56
how-to-use-azureml/azure-databricks/linking/README.md
Normal file
56
how-to-use-azureml/azure-databricks/linking/README.md
Normal file
@@ -0,0 +1,56 @@
|
||||
# Adding an init script to an Azure Databricks cluster
|
||||
|
||||
The [azureml-cluster-init.sh](./azureml-cluster-init.sh) script configures the environment to
|
||||
1. Use the configured AzureML Workspace with Workspace.from_config()
|
||||
2. Set the default MLflow Tracking Server to be the AzureML managed one
|
||||
|
||||
Modify azureml-cluster-init.sh by providing the values for region, subscriptionId, resourceGroupName, and workspaceName of your target Azure ML workspace in the highlighted section at the top of the script.
|
||||
|
||||
To create the Azure Databricks cluster-scoped init script
|
||||
|
||||
1. Create the base directory you want to store the init script in if it does not exist.
|
||||
```
|
||||
dbutils.fs.mkdirs("dbfs:/databricks/<directory>/")
|
||||
```
|
||||
|
||||
2. Create the script by copying the contents of azureml-cluster-init.sh
|
||||
```
|
||||
dbutils.fs.put("/databricks/<directory>/azureml-cluster-init.sh","""
|
||||
<configured_contents_of_azureml-cluster-init.sh>
|
||||
""", True)
|
||||
|
||||
3. Check that the script exists.
|
||||
```
|
||||
display(dbutils.fs.ls("dbfs:/databricks/<directory>/azureml-cluster-init.sh"))
|
||||
```
|
||||
|
||||
1. Configure the cluster to run the script.
|
||||
* Using the cluster configuration page
|
||||
1. On the cluster configuration page, click the Advanced Options toggle.
|
||||
1. At the bottom of the page, click the Init Scripts tab.
|
||||
1. In the Destination drop-down, select a destination type. Example: 'DBFS'
|
||||
1. Specify a path to the init script.
|
||||
```
|
||||
dbfs:/databricks/<directory>/azureml-cluster-init.sh
|
||||
```
|
||||
1. Click Add
|
||||
|
||||
* Using the API.
|
||||
```
|
||||
curl -n -X POST -H 'Content-Type: application/json' -d '{
|
||||
"cluster_id": "<cluster_id>",
|
||||
"num_workers": <num_workers>,
|
||||
"spark_version": "<spark_version>",
|
||||
"node_type_id": "<node_type_id>",
|
||||
"cluster_log_conf": {
|
||||
"dbfs" : {
|
||||
"destination": "dbfs:/cluster-logs"
|
||||
}
|
||||
},
|
||||
"init_scripts": [ {
|
||||
"dbfs": {
|
||||
"destination": "dbfs:/databricks/<directory>/azureml-cluster-init.sh"
|
||||
}
|
||||
} ]
|
||||
}' https://<databricks-instance>/api/2.0/clusters/edit
|
||||
```
|
||||
@@ -0,0 +1,24 @@
|
||||
#!/bin/bash
|
||||
# This script configures the environment to
|
||||
# 1. Use the configured AzureML Workspace with azureml.core.Workspace.from_config()
|
||||
# 2. Set the default MLflow Tracking Server to be the AzureML managed one
|
||||
|
||||
############## START CONFIGURATION #################
|
||||
# Provide the required *AzureML* workspace information
|
||||
region="" # example: westus2
|
||||
subscriptionId="" # example: bcb65f42-f234-4bff-91cf-9ef816cd9936
|
||||
resourceGroupName="" # example: dev-rg
|
||||
workspaceName="" # example: myazuremlws
|
||||
|
||||
# Optional config directory
|
||||
configLocation="/databricks/config.json"
|
||||
############### END CONFIGURATION #################
|
||||
|
||||
|
||||
# Drop the workspace configuration on the cluster
|
||||
sudo touch $configLocation
|
||||
sudo echo {\\"subscription_id\\": \\"${subscriptionId}\\", \\"resource_group\\": \\"${resourceGroupName}\\", \\"workspace_name\\": \\"${workspaceName}\\"} > $configLocation
|
||||
|
||||
# Set the MLflow Tracking URI
|
||||
trackingUri="adbazureml://${region}.experiments.azureml.net/history/v1.0/subscriptions/${subscriptionId}/resourceGroups/${resourceGroupName}/providers/Microsoft.MachineLearningServices/workspaces/${workspaceName}"
|
||||
sudo echo export MLFLOW_TRACKING_URI=${trackingUri} >> /databricks/spark/conf/spark-env.sh
|
||||
@@ -1,709 +0,0 @@
|
||||
{
|
||||
"cells": [
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# Track Data Drift between Training and Inference Data in Production \n",
|
||||
"\n",
|
||||
"With this notebook, you will learn how to enable the DataDrift service to automatically track and determine whether your inference data is drifting from the data your model was initially trained on. The DataDrift service provides metrics and visualizations to help stakeholders identify which specific features cause the concept drift to occur.\n",
|
||||
"\n",
|
||||
"Please email driftfeedback@microsoft.com with any issues. A member from the DataDrift team will respond shortly. \n",
|
||||
"\n",
|
||||
"The DataDrift Public Preview API can be found [here](https://docs.microsoft.com/en-us/python/api/azureml-contrib-datadrift/?view=azure-ml-py). "
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
""
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# Prerequisites and Setup"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Install the DataDrift package\n",
|
||||
"\n",
|
||||
"Install the azureml-contrib-datadrift, azureml-contrib-opendatasets and lightgbm packages before running this notebook.\n",
|
||||
"```\n",
|
||||
"pip install azureml-contrib-datadrift\n",
|
||||
"pip install azureml-contrib-datasets\n",
|
||||
"pip install lightgbm\n",
|
||||
"```"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Import Dependencies"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"import json\n",
|
||||
"import os\n",
|
||||
"import time\n",
|
||||
"from datetime import datetime, timedelta\n",
|
||||
"\n",
|
||||
"import numpy as np\n",
|
||||
"import pandas as pd\n",
|
||||
"import requests\n",
|
||||
"from azureml.contrib.datadrift import DataDriftDetector, AlertConfiguration\n",
|
||||
"from azureml.contrib.opendatasets import NoaaIsdWeather\n",
|
||||
"from azureml.core import Dataset, Workspace, Run\n",
|
||||
"from azureml.core.compute import AksCompute, ComputeTarget\n",
|
||||
"from azureml.core.conda_dependencies import CondaDependencies\n",
|
||||
"from azureml.core.experiment import Experiment\n",
|
||||
"from azureml.core.image import ContainerImage\n",
|
||||
"from azureml.core.model import Model\n",
|
||||
"from azureml.core.webservice import Webservice, AksWebservice\n",
|
||||
"from azureml.widgets import RunDetails\n",
|
||||
"from sklearn.externals import joblib\n",
|
||||
"from sklearn.model_selection import train_test_split\n"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Set up Configuraton and Create Azure ML Workspace\n",
|
||||
"\n",
|
||||
"If you are using an Azure Machine Learning Notebook VM, you are all set. Otherwise, go through the [configuration notebook](../../configuration.ipynb) first if you haven't already to establish your connection to the AzureML Workspace."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Please type in your initials/alias. The prefix is prepended to the names of resources created by this notebook. \n",
|
||||
"prefix = \"dd\"\n",
|
||||
"\n",
|
||||
"# NOTE: Please do not change the model_name, as it's required by the score.py file\n",
|
||||
"model_name = \"driftmodel\"\n",
|
||||
"image_name = \"{}driftimage\".format(prefix)\n",
|
||||
"service_name = \"{}driftservice\".format(prefix)\n",
|
||||
"\n",
|
||||
"# optionally, set email address to receive an email alert for DataDrift\n",
|
||||
"email_address = \"\""
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"ws = Workspace.from_config()\n",
|
||||
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep = '\\n')"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Generate Train/Testing Data\n",
|
||||
"\n",
|
||||
"For this demo, we will use NOAA weather data from [Azure Open Datasets](https://azure.microsoft.com/services/open-datasets/). You may replace this step with your own dataset. "
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"usaf_list = ['725724', '722149', '723090', '722159', '723910', '720279',\n",
|
||||
" '725513', '725254', '726430', '720381', '723074', '726682',\n",
|
||||
" '725486', '727883', '723177', '722075', '723086', '724053',\n",
|
||||
" '725070', '722073', '726060', '725224', '725260', '724520',\n",
|
||||
" '720305', '724020', '726510', '725126', '722523', '703333',\n",
|
||||
" '722249', '722728', '725483', '722972', '724975', '742079',\n",
|
||||
" '727468', '722193', '725624', '722030', '726380', '720309',\n",
|
||||
" '722071', '720326', '725415', '724504', '725665', '725424',\n",
|
||||
" '725066']\n",
|
||||
"\n",
|
||||
"columns = ['usaf', 'wban', 'datetime', 'latitude', 'longitude', 'elevation', 'windAngle', 'windSpeed', 'temperature', 'stationName', 'p_k']\n",
|
||||
"\n",
|
||||
"def enrich_weather_noaa_data(noaa_df):\n",
|
||||
" hours_in_day = 23\n",
|
||||
" week_in_year = 52\n",
|
||||
" \n",
|
||||
"\n",
|
||||
" noaa_df = noaa_df.assign(hour=noaa_df[\"datetime\"].dt.hour,\n",
|
||||
" weekofyear=noaa_df[\"datetime\"].dt.week,\n",
|
||||
" sine_weekofyear=noaa_df['datetime'].transform(lambda x: np.sin((2*np.pi*x.dt.week-1)/week_in_year)),\n",
|
||||
" cosine_weekofyear=noaa_df['datetime'].transform(lambda x: np.cos((2*np.pi*x.dt.week-1)/week_in_year)),\n",
|
||||
" sine_hourofday=noaa_df['datetime'].transform(lambda x: np.sin(2*np.pi*x.dt.hour/hours_in_day)),\n",
|
||||
" cosine_hourofday=noaa_df['datetime'].transform(lambda x: np.cos(2*np.pi*x.dt.hour/hours_in_day))\n",
|
||||
" )\n",
|
||||
" \n",
|
||||
" return noaa_df\n",
|
||||
"\n",
|
||||
"\n",
|
||||
"def add_window_col(input_df):\n",
|
||||
" shift_interval = pd.Timedelta('-7 days') # your X days interval\n",
|
||||
" df_shifted = input_df.copy()\n",
|
||||
" df_shifted.loc[:,'datetime'] = df_shifted['datetime'] - shift_interval\n",
|
||||
" df_shifted.drop(list(input_df.columns.difference(['datetime', 'usaf', 'wban', 'sine_hourofday', 'temperature'])), axis=1, inplace=True)\n",
|
||||
"\n",
|
||||
" # merge, keeping only observations where -1 lag is present\n",
|
||||
" df2 = pd.merge(input_df,\n",
|
||||
" df_shifted,\n",
|
||||
" on=['datetime', 'usaf', 'wban', 'sine_hourofday'],\n",
|
||||
" how='inner', # use 'left' to keep observations without lags\n",
|
||||
" suffixes=['', '-7'])\n",
|
||||
" return df2\n",
|
||||
"\n",
|
||||
"def get_noaa_data(start_time, end_time, cols, station_list):\n",
|
||||
" isd = NoaaIsdWeather(start_time, end_time, cols=cols)\n",
|
||||
" # Read into Pandas data frame.\n",
|
||||
" noaa_df = isd.to_pandas_dataframe()\n",
|
||||
" noaa_df = noaa_df.rename(columns={\"stationName\": \"station_name\"})\n",
|
||||
" \n",
|
||||
" df_filtered = noaa_df[noaa_df[\"usaf\"].isin(station_list)]\n",
|
||||
" df_filtered.reset_index(drop=True)\n",
|
||||
" \n",
|
||||
" # Enrich with time features\n",
|
||||
" df_enriched = enrich_weather_noaa_data(df_filtered)\n",
|
||||
" \n",
|
||||
" return df_enriched\n",
|
||||
"\n",
|
||||
"def get_featurized_noaa_df(start_time, end_time, cols, station_list):\n",
|
||||
" df_1 = get_noaa_data(start_time - timedelta(days=7), start_time - timedelta(seconds=1), cols, station_list)\n",
|
||||
" df_2 = get_noaa_data(start_time, end_time, cols, station_list)\n",
|
||||
" noaa_df = pd.concat([df_1, df_2])\n",
|
||||
" \n",
|
||||
" print(\"Adding window feature\")\n",
|
||||
" df_window = add_window_col(noaa_df)\n",
|
||||
" \n",
|
||||
" cat_columns = df_window.dtypes == object\n",
|
||||
" cat_columns = cat_columns[cat_columns == True]\n",
|
||||
" \n",
|
||||
" print(\"Encoding categorical columns\")\n",
|
||||
" df_encoded = pd.get_dummies(df_window, columns=cat_columns.keys().tolist())\n",
|
||||
" \n",
|
||||
" print(\"Dropping unnecessary columns\")\n",
|
||||
" df_featurized = df_encoded.drop(['windAngle', 'windSpeed', 'datetime', 'elevation'], axis=1).dropna().drop_duplicates()\n",
|
||||
" \n",
|
||||
" return df_featurized"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Train model on Jan 1 - 14, 2009 data\n",
|
||||
"df = get_featurized_noaa_df(datetime(2009, 1, 1), datetime(2009, 1, 14, 23, 59, 59), columns, usaf_list)\n",
|
||||
"df.head()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"label = \"temperature\"\n",
|
||||
"x_df = df.drop(label, axis=1)\n",
|
||||
"y_df = df[[label]]\n",
|
||||
"x_train, x_test, y_train, y_test = train_test_split(df, y_df, test_size=0.2, random_state=223)\n",
|
||||
"print(x_train.shape, x_test.shape, y_train.shape, y_test.shape)\n",
|
||||
"\n",
|
||||
"training_dir = 'outputs/training'\n",
|
||||
"training_file = \"training.csv\"\n",
|
||||
"\n",
|
||||
"# Generate training dataframe to register as Training Dataset\n",
|
||||
"os.makedirs(training_dir, exist_ok=True)\n",
|
||||
"training_df = pd.merge(x_train.drop(label, axis=1), y_train, left_index=True, right_index=True)\n",
|
||||
"training_df.to_csv(training_dir + \"/\" + training_file)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Create/Register Training Dataset"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"dataset_name = \"dataset\"\n",
|
||||
"name_suffix = datetime.utcnow().strftime(\"%Y-%m-%d-%H-%M-%S\")\n",
|
||||
"snapshot_name = \"snapshot-{}\".format(name_suffix)\n",
|
||||
"\n",
|
||||
"dstore = ws.get_default_datastore()\n",
|
||||
"dstore.upload(training_dir, \"data/training\", show_progress=True)\n",
|
||||
"dpath = dstore.path(\"data/training/training.csv\")\n",
|
||||
"trainingDataset = Dataset.auto_read_files(dpath, include_path=True)\n",
|
||||
"trainingDataset = trainingDataset.register(workspace=ws, name=dataset_name, description=\"dset\", exist_ok=True)\n",
|
||||
"\n",
|
||||
"trainingDataSnapshot = trainingDataset.create_snapshot(snapshot_name=snapshot_name, compute_target=None, create_data_snapshot=True)\n",
|
||||
"datasets = [(Dataset.Scenario.TRAINING, trainingDataSnapshot)]\n",
|
||||
"print(\"dataset registration done.\\n\")\n",
|
||||
"datasets"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Train and Save Model"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"import lightgbm as lgb\n",
|
||||
"\n",
|
||||
"train = lgb.Dataset(data=x_train, \n",
|
||||
" label=y_train)\n",
|
||||
"\n",
|
||||
"test = lgb.Dataset(data=x_test, \n",
|
||||
" label=y_test,\n",
|
||||
" reference=train)\n",
|
||||
"\n",
|
||||
"params = {'learning_rate' : 0.1,\n",
|
||||
" 'boosting' : 'gbdt',\n",
|
||||
" 'metric' : 'rmse',\n",
|
||||
" 'feature_fraction' : 1,\n",
|
||||
" 'bagging_fraction' : 1,\n",
|
||||
" 'max_depth': 6,\n",
|
||||
" 'num_leaves' : 31,\n",
|
||||
" 'objective' : 'regression',\n",
|
||||
" 'bagging_freq' : 1,\n",
|
||||
" \"verbose\": -1,\n",
|
||||
" 'min_data_per_leaf': 100}\n",
|
||||
"\n",
|
||||
"model = lgb.train(params, \n",
|
||||
" num_boost_round=500,\n",
|
||||
" train_set=train,\n",
|
||||
" valid_sets=[train, test],\n",
|
||||
" verbose_eval=50,\n",
|
||||
" early_stopping_rounds=25)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"model_file = 'outputs/{}.pkl'.format(model_name)\n",
|
||||
"\n",
|
||||
"os.makedirs('outputs', exist_ok=True)\n",
|
||||
"joblib.dump(model, model_file)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Register Model"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"model = Model.register(model_path=model_file,\n",
|
||||
" model_name=model_name,\n",
|
||||
" workspace=ws,\n",
|
||||
" datasets=datasets)\n",
|
||||
"\n",
|
||||
"print(model_name, image_name, service_name, model)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# Deploy Model To AKS"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": []
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Prepare Environment"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"myenv = CondaDependencies.create(conda_packages=['numpy','scikit-learn', 'joblib', 'lightgbm', 'pandas'],\n",
|
||||
" pip_packages=['azureml-monitoring', 'azureml-sdk[automl]'])\n",
|
||||
"\n",
|
||||
"with open(\"myenv.yml\",\"w\") as f:\n",
|
||||
" f.write(myenv.serialize_to_string())"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Create Image"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Image creation may take up to 15 minutes.\n",
|
||||
"\n",
|
||||
"image_name = image_name + str(model.version)\n",
|
||||
"\n",
|
||||
"if not image_name in ws.images:\n",
|
||||
" # Use the score.py defined in this directory as the execution script\n",
|
||||
" # NOTE: The Model Data Collector must be enabled in the execution script for DataDrift to run correctly\n",
|
||||
" image_config = ContainerImage.image_configuration(execution_script=\"score.py\",\n",
|
||||
" runtime=\"python\",\n",
|
||||
" conda_file=\"myenv.yml\",\n",
|
||||
" description=\"Image with weather dataset model\")\n",
|
||||
" image = ContainerImage.create(name=image_name,\n",
|
||||
" models=[model],\n",
|
||||
" image_config=image_config,\n",
|
||||
" workspace=ws)\n",
|
||||
"\n",
|
||||
" image.wait_for_creation(show_output=True)\n",
|
||||
"else:\n",
|
||||
" image = ws.images[image_name]"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Create Compute Target"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"aks_name = 'dd-demo-e2e'\n",
|
||||
"prov_config = AksCompute.provisioning_configuration()\n",
|
||||
"\n",
|
||||
"if not aks_name in ws.compute_targets:\n",
|
||||
" aks_target = ComputeTarget.create(workspace=ws,\n",
|
||||
" name=aks_name,\n",
|
||||
" provisioning_configuration=prov_config)\n",
|
||||
"\n",
|
||||
" aks_target.wait_for_completion(show_output=True)\n",
|
||||
" print(aks_target.provisioning_state)\n",
|
||||
" print(aks_target.provisioning_errors)\n",
|
||||
"else:\n",
|
||||
" aks_target=ws.compute_targets[aks_name]"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Deploy Service"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"aks_service_name = service_name\n",
|
||||
"\n",
|
||||
"if not aks_service_name in ws.webservices:\n",
|
||||
" aks_config = AksWebservice.deploy_configuration(collect_model_data=True, enable_app_insights=True)\n",
|
||||
" aks_service = Webservice.deploy_from_image(workspace=ws,\n",
|
||||
" name=aks_service_name,\n",
|
||||
" image=image,\n",
|
||||
" deployment_config=aks_config,\n",
|
||||
" deployment_target=aks_target)\n",
|
||||
" aks_service.wait_for_deployment(show_output=True)\n",
|
||||
" print(aks_service.state)\n",
|
||||
"else:\n",
|
||||
" aks_service = ws.webservices[aks_service_name]"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# Run DataDrift Analysis"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Send Scoring Data to Service"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Download Scoring Data"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Score Model on March 15, 2016 data\n",
|
||||
"scoring_df = get_noaa_data(datetime(2016, 3, 15) - timedelta(days=7), datetime(2016, 3, 16), columns, usaf_list)\n",
|
||||
"# Add the window feature column\n",
|
||||
"scoring_df = add_window_col(scoring_df)\n",
|
||||
"\n",
|
||||
"# Drop features not used by the model\n",
|
||||
"print(\"Dropping unnecessary columns\")\n",
|
||||
"scoring_df = scoring_df.drop(['windAngle', 'windSpeed', 'datetime', 'elevation'], axis=1).dropna()\n",
|
||||
"scoring_df.head()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# One Hot Encode the scoring dataset to match the training dataset schema\n",
|
||||
"columns_dict = model.datasets[\"training\"][0].get_profile().columns\n",
|
||||
"extra_cols = ('Path', 'Column1')\n",
|
||||
"for k in extra_cols:\n",
|
||||
" columns_dict.pop(k, None)\n",
|
||||
"training_columns = list(columns_dict.keys())\n",
|
||||
"\n",
|
||||
"categorical_columns = scoring_df.dtypes == object\n",
|
||||
"categorical_columns = categorical_columns[categorical_columns == True]\n",
|
||||
"\n",
|
||||
"test_df = pd.get_dummies(scoring_df[categorical_columns.keys().tolist()])\n",
|
||||
"encoded_df = scoring_df.join(test_df)\n",
|
||||
"\n",
|
||||
"# Populate missing OHE columns with 0 values to match traning dataset schema\n",
|
||||
"difference = list(set(training_columns) - set(encoded_df.columns.tolist()))\n",
|
||||
"for col in difference:\n",
|
||||
" encoded_df[col] = 0\n",
|
||||
"encoded_df.head()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Serialize dataframe to list of row dictionaries\n",
|
||||
"encoded_dict = encoded_df.to_dict('records')"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Submit Scoring Data to Service"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"%%time\n",
|
||||
"\n",
|
||||
"# retreive the API keys. AML generates two keys.\n",
|
||||
"key1, key2 = aks_service.get_keys()\n",
|
||||
"\n",
|
||||
"total_count = len(scoring_df)\n",
|
||||
"i = 0\n",
|
||||
"load = []\n",
|
||||
"for row in encoded_dict:\n",
|
||||
" load.append(row)\n",
|
||||
" i = i + 1\n",
|
||||
" if i % 100 == 0:\n",
|
||||
" payload = json.dumps({\"data\": load})\n",
|
||||
" \n",
|
||||
" # construct raw HTTP request and send to the service\n",
|
||||
" payload_binary = bytes(payload,encoding = 'utf8')\n",
|
||||
" headers = {'Content-Type':'application/json', 'Authorization': 'Bearer ' + key1}\n",
|
||||
" resp = requests.post(aks_service.scoring_uri, payload_binary, headers=headers)\n",
|
||||
" \n",
|
||||
" print(\"prediction:\", resp.content, \"Progress: {}/{}\".format(i, total_count)) \n",
|
||||
"\n",
|
||||
" load = []\n",
|
||||
" time.sleep(3)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Configure DataDrift"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"services = [service_name]\n",
|
||||
"start = datetime.now() - timedelta(days=2)\n",
|
||||
"end = datetime(year=2020, month=1, day=22, hour=15, minute=16)\n",
|
||||
"feature_list = ['usaf', 'wban', 'latitude', 'longitude', 'station_name', 'p_k', 'sine_hourofday', 'cosine_hourofday', 'temperature-7']\n",
|
||||
"alert_config = AlertConfiguration([email_address]) if email_address else None\n",
|
||||
"\n",
|
||||
"# there will be an exception indicating using get() method if DataDrift object already exist\n",
|
||||
"try:\n",
|
||||
" datadrift = DataDriftDetector.create(ws, model.name, model.version, services, frequency=\"Day\", alert_config=alert_config)\n",
|
||||
"except KeyError:\n",
|
||||
" datadrift = DataDriftDetector.get(ws, model.name, model.version)\n",
|
||||
" \n",
|
||||
"print(\"Details of DataDrift Object:\\n{}\".format(datadrift))"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Run an Adhoc DataDriftDetector Run"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"target_date = datetime.today()\n",
|
||||
"run = datadrift.run(target_date, services, feature_list=feature_list, create_compute_target=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"exp = Experiment(ws, datadrift._id)\n",
|
||||
"dd_run = Run(experiment=exp, run_id=run)\n",
|
||||
"RunDetails(dd_run).show()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Get Drift Analysis Results"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"children = list(dd_run.get_children())\n",
|
||||
"for child in children:\n",
|
||||
" child.wait_for_completion()\n",
|
||||
"\n",
|
||||
"drift_metrics = datadrift.get_output(start_time=start, end_time=end)\n",
|
||||
"drift_metrics"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Show all drift figures, one per serivice.\n",
|
||||
"# If setting with_details is False (by default), only drift will be shown; if it's True, all details will be shown.\n",
|
||||
"\n",
|
||||
"drift_figures = datadrift.show(with_details=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Enable DataDrift Schedule"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"datadrift.enable_schedule()"
|
||||
]
|
||||
}
|
||||
],
|
||||
"metadata": {
|
||||
"authors": [
|
||||
{
|
||||
"name": "rafarmah"
|
||||
}
|
||||
],
|
||||
"kernelspec": {
|
||||
"display_name": "Python 3.6",
|
||||
"language": "python",
|
||||
"name": "python36"
|
||||
},
|
||||
"language_info": {
|
||||
"codemirror_mode": {
|
||||
"name": "ipython",
|
||||
"version": 3
|
||||
},
|
||||
"file_extension": ".py",
|
||||
"mimetype": "text/x-python",
|
||||
"name": "python",
|
||||
"nbconvert_exporter": "python",
|
||||
"pygments_lexer": "ipython3",
|
||||
"version": "3.6.6"
|
||||
}
|
||||
},
|
||||
"nbformat": 4,
|
||||
"nbformat_minor": 2
|
||||
}
|
||||
@@ -1,3 +0,0 @@
|
||||
## Using data drift APIs
|
||||
|
||||
1. [Detect data drift for a model](azure-ml-datadrift.ipynb): Detect data drift for a deployed model.
|
||||
@@ -1,58 +0,0 @@
|
||||
import pickle
|
||||
import json
|
||||
import numpy
|
||||
import azureml.train.automl
|
||||
from sklearn.externals import joblib
|
||||
from sklearn.linear_model import Ridge
|
||||
from azureml.core.model import Model
|
||||
from azureml.core.run import Run
|
||||
from azureml.monitoring import ModelDataCollector
|
||||
import time
|
||||
import pandas as pd
|
||||
|
||||
|
||||
def init():
|
||||
global model, inputs_dc, prediction_dc, feature_names, categorical_features
|
||||
|
||||
print("Model is initialized" + time.strftime("%H:%M:%S"))
|
||||
model_path = Model.get_model_path(model_name="driftmodel")
|
||||
model = joblib.load(model_path)
|
||||
|
||||
feature_names = ["usaf", "wban", "latitude", "longitude", "station_name", "p_k",
|
||||
"sine_weekofyear", "cosine_weekofyear", "sine_hourofday", "cosine_hourofday",
|
||||
"temperature-7"]
|
||||
|
||||
categorical_features = ["usaf", "wban", "p_k", "station_name"]
|
||||
|
||||
inputs_dc = ModelDataCollector(model_name="driftmodel",
|
||||
identifier="inputs",
|
||||
feature_names=feature_names)
|
||||
|
||||
prediction_dc = ModelDataCollector("driftmodel",
|
||||
identifier="predictions",
|
||||
feature_names=["temperature"])
|
||||
|
||||
|
||||
def run(raw_data):
|
||||
global inputs_dc, prediction_dc
|
||||
|
||||
try:
|
||||
data = json.loads(raw_data)["data"]
|
||||
data = pd.DataFrame(data)
|
||||
|
||||
# Remove the categorical features as the model expects OHE values
|
||||
input_data = data.drop(categorical_features, axis=1)
|
||||
|
||||
result = model.predict(input_data)
|
||||
|
||||
# Collect the non-OHE dataframe
|
||||
collected_df = data[feature_names]
|
||||
|
||||
inputs_dc.collect(collected_df.values)
|
||||
prediction_dc.collect(result)
|
||||
return result.tolist()
|
||||
except Exception as e:
|
||||
error = str(e)
|
||||
|
||||
print(error + time.strftime("%H:%M:%S"))
|
||||
return error
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 22 KiB |
217
how-to-use-azureml/deployment/accelerated-models/NOTICE.txt
Normal file
217
how-to-use-azureml/deployment/accelerated-models/NOTICE.txt
Normal file
@@ -0,0 +1,217 @@
|
||||
|
||||
NOTICES AND INFORMATION
|
||||
Do Not Translate or Localize
|
||||
|
||||
This Azure Machine Learning service example notebooks repository includes material from the projects listed below.
|
||||
|
||||
|
||||
1. SSD-Tensorflow (https://github.com/balancap/ssd-tensorflow)
|
||||
|
||||
|
||||
%% SSD-Tensorflow NOTICES AND INFORMATION BEGIN HERE
|
||||
=========================================
|
||||
|
||||
Apache License
|
||||
Version 2.0, January 2004
|
||||
http://www.apache.org/licenses/
|
||||
|
||||
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
|
||||
|
||||
1. Definitions.
|
||||
|
||||
"License" shall mean the terms and conditions for use, reproduction,
|
||||
and distribution as defined by Sections 1 through 9 of this document.
|
||||
|
||||
"Licensor" shall mean the copyright owner or entity authorized by
|
||||
the copyright owner that is granting the License.
|
||||
|
||||
"Legal Entity" shall mean the union of the acting entity and all
|
||||
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|
||||
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|
||||
"control" means (i) the power, direct or indirect, to cause the
|
||||
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|
||||
otherwise, or (ii) ownership of fifty percent (50%) or more of the
|
||||
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|
||||
|
||||
"You" (or "Your") shall mean an individual or Legal Entity
|
||||
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|
||||
"Source" form shall mean the preferred form for making modifications,
|
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|
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"Work" shall mean the work of authorship, whether in Source or
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|
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|
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|
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APPENDIX: How to apply the Apache License to your work.
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||||
To apply the Apache License to your work, attach the following
|
||||
boilerplate notice, with the fields enclosed by brackets "[]"
|
||||
replaced with your own identifying information. (Don't include
|
||||
the brackets!) The text should be enclosed in the appropriate
|
||||
comment syntax for the file format. We also recommend that a
|
||||
file or class name and description of purpose be included on the
|
||||
same "printed page" as the copyright notice for easier
|
||||
identification within third-party archives.
|
||||
|
||||
Copyright [yyyy] [name of copyright owner]
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
You may obtain a copy of the License at
|
||||
|
||||
http://www.apache.org/licenses/LICENSE-2.0
|
||||
|
||||
Unless required by applicable law or agreed to in writing, software
|
||||
distributed under the License is distributed on an "AS IS" BASIS,
|
||||
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
See the License for the specific language governing permissions and
|
||||
limitations under the License.
|
||||
|
||||
=========================================
|
||||
END OF SSD-Tensorflow NOTICES AND INFORMATION
|
||||
@@ -12,7 +12,7 @@ Easily create and train a model using various deep neural networks (DNNs) as a f
|
||||
To learn more about the azureml-accel-model classes, see the section [Model Classes](#model-classes) below or the [Azure ML Accel Models SDK documentation](https://docs.microsoft.com/en-us/python/api/azureml-accel-models/azureml.accel?view=azure-ml-py).
|
||||
|
||||
### Step 1: Create an Azure ML workspace
|
||||
Follow [these instructions](https://docs.microsoft.com/en-us/azure/machine-learning/service/quickstart-create-workspace-with-python) to install the Azure ML SDK on your local machine, create an Azure ML workspace, and set up your notebook environment, which is required for the next step.
|
||||
Follow [these instructions](https://docs.microsoft.com/en-us/azure/machine-learning/service/setup-create-workspace) to install the Azure ML SDK on your local machine, create an Azure ML workspace, and set up your notebook environment, which is required for the next step.
|
||||
|
||||
### Step 2: Check your FPGA quota
|
||||
Use the Azure CLI to check whether you have quota.
|
||||
|
||||
@@ -1,5 +1,12 @@
|
||||
{
|
||||
"cells": [
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
""
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
@@ -230,11 +237,14 @@
|
||||
"\n",
|
||||
"# Convert model\n",
|
||||
"convert_request = AccelOnnxConverter.convert_tf_model(ws, registered_model, input_tensors, output_tensors_str)\n",
|
||||
"# If it fails, you can run wait_for_completion again with show_output=True.\n",
|
||||
"convert_request.wait_for_completion(show_output=False)\n",
|
||||
"converted_model = convert_request.result\n",
|
||||
"print(\"\\nSuccessfully converted: \", converted_model.name, converted_model.url, converted_model.version, \n",
|
||||
" converted_model.id, converted_model.created_time, '\\n')\n",
|
||||
"if convert_request.wait_for_completion(show_output = False):\n",
|
||||
" # If the above call succeeded, get the converted model\n",
|
||||
" converted_model = convert_request.result\n",
|
||||
" print(\"\\nSuccessfully converted: \", converted_model.name, converted_model.url, converted_model.version, \n",
|
||||
" converted_model.id, converted_model.created_time, '\\n')\n",
|
||||
"else:\n",
|
||||
" print(\"Model conversion failed. Showing output.\")\n",
|
||||
" convert_request.wait_for_completion(show_output = True)\n",
|
||||
"\n",
|
||||
"# Package into AccelContainerImage\n",
|
||||
"image_config = AccelContainerImage.image_configuration()\n",
|
||||
@@ -298,6 +308,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"%%time\n",
|
||||
"aks_target.wait_for_completion(show_output = True)\n",
|
||||
"print(aks_target.provisioning_state)\n",
|
||||
"print(aks_target.provisioning_errors)"
|
||||
@@ -316,6 +327,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"%%time\n",
|
||||
"from azureml.core.webservice import Webservice, AksWebservice\n",
|
||||
"\n",
|
||||
"# Set the web service configuration (for creating a test service, we don't want autoscale enabled)\n",
|
||||
@@ -324,7 +336,7 @@
|
||||
" num_replicas=1,\n",
|
||||
" auth_enabled = False)\n",
|
||||
"\n",
|
||||
"aks_service_name ='my-aks-service'\n",
|
||||
"aks_service_name ='my-aks-service-3'\n",
|
||||
"\n",
|
||||
"aks_service = Webservice.deploy_from_image(workspace = ws,\n",
|
||||
" name = aks_service_name,\n",
|
||||
@@ -342,10 +354,9 @@
|
||||
"## 5. Test the service\n",
|
||||
"<a id=\"create-client\"></a>\n",
|
||||
"### 5.a. Create Client\n",
|
||||
"The image supports gRPC and the TensorFlow Serving \"predict\" API. We have a client that can call into the docker image to get predictions. \n",
|
||||
"\n",
|
||||
"**Note:** If you chose to use auth_enabled=True when creating your AksWebservice.deploy_configuration(), see documentation [here](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.webservice(class)?view=azure-ml-py#get-keys--) on how to retrieve your keys and use either key as an argument to PredictionClient(...,access_token=key).",
|
||||
"The image supports gRPC and the TensorFlow Serving \"predict\" API. We will create a PredictionClient from the Webservice object that can call into the docker image to get predictions. If you do not have the Webservice object, you can also create [PredictionClient](https://docs.microsoft.com/en-us/python/api/azureml-accel-models/azureml.accel.predictionclient?view=azure-ml-py) directly.\n",
|
||||
"\n",
|
||||
"**Note:** If you chose to use auth_enabled=True when creating your AksWebservice.deploy_configuration(), see documentation [here](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.webservice(class)?view=azure-ml-py#get-keys--) on how to retrieve your keys and use either key as an argument to PredictionClient(...,access_token=key).\n",
|
||||
"**WARNING:** If you are running on Azure Notebooks free compute, you will not be able to make outgoing calls to your service. Try locating your client on a different machine to consume it."
|
||||
]
|
||||
},
|
||||
@@ -356,18 +367,10 @@
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Using the grpc client in AzureML Accelerated Models SDK\n",
|
||||
"from azureml.accel.client import PredictionClient\n",
|
||||
"\n",
|
||||
"address = aks_service.scoring_uri\n",
|
||||
"ssl_enabled = address.startswith(\"https\")\n",
|
||||
"address = address[address.find('/')+2:].strip('/')\n",
|
||||
"port = 443 if ssl_enabled else 80\n",
|
||||
"from azureml.accel import client_from_service\n",
|
||||
"\n",
|
||||
"# Initialize AzureML Accelerated Models client\n",
|
||||
"client = PredictionClient(address=address,\n",
|
||||
" port=port,\n",
|
||||
" use_ssl=ssl_enabled,\n",
|
||||
" service_name=aks_service.name)"
|
||||
"client = client_from_service(aks_service)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -486,7 +489,7 @@
|
||||
"name": "python",
|
||||
"nbconvert_exporter": "python",
|
||||
"pygments_lexer": "ipython3",
|
||||
"version": "3.6.0"
|
||||
"version": "3.5.6"
|
||||
}
|
||||
},
|
||||
"nbformat": 4,
|
||||
|
||||
@@ -0,0 +1,8 @@
|
||||
name: accelerated-models-object-detection
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-accel-models
|
||||
- tensorflow
|
||||
- opencv-python
|
||||
- matplotlib
|
||||
@@ -1,5 +1,12 @@
|
||||
{
|
||||
"cells": [
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
""
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
@@ -270,12 +277,15 @@
|
||||
"from azureml.accel import AccelOnnxConverter\n",
|
||||
"\n",
|
||||
"convert_request = AccelOnnxConverter.convert_tf_model(ws, registered_model, input_tensors, output_tensors)\n",
|
||||
"# If it fails, you can run wait_for_completion again with show_output=True.\n",
|
||||
"convert_request.wait_for_completion(show_output = False)\n",
|
||||
"# If the above call succeeded, get the converted model\n",
|
||||
"converted_model = convert_request.result\n",
|
||||
"print(\"\\nSuccessfully converted: \", converted_model.name, converted_model.url, converted_model.version, \n",
|
||||
" converted_model.id, converted_model.created_time, '\\n')"
|
||||
"\n",
|
||||
"if convert_request.wait_for_completion(show_output = False):\n",
|
||||
" # If the above call succeeded, get the converted model\n",
|
||||
" converted_model = convert_request.result\n",
|
||||
" print(\"\\nSuccessfully converted: \", converted_model.name, converted_model.url, converted_model.version, \n",
|
||||
" converted_model.id, converted_model.created_time, '\\n')\n",
|
||||
"else:\n",
|
||||
" print(\"Model conversion failed. Showing output.\")\n",
|
||||
" convert_request.wait_for_completion(show_output = True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -366,6 +376,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"%%time\n",
|
||||
"aks_target.wait_for_completion(show_output = True)\n",
|
||||
"print(aks_target.provisioning_state)\n",
|
||||
"print(aks_target.provisioning_errors)"
|
||||
@@ -384,15 +395,16 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"%%time\n",
|
||||
"from azureml.core.webservice import Webservice, AksWebservice\n",
|
||||
"\n",
|
||||
"#Set the web service configuration (for creating a test service, we don't want autoscale enabled)\n",
|
||||
"# Set the web service configuration (for creating a test service, we don't want autoscale enabled)\n",
|
||||
"# Authentication is enabled by default, but for testing we specify False\n",
|
||||
"aks_config = AksWebservice.deploy_configuration(autoscale_enabled=False,\n",
|
||||
" num_replicas=1,\n",
|
||||
" auth_enabled = False)\n",
|
||||
"\n",
|
||||
"aks_service_name ='my-aks-service'\n",
|
||||
"aks_service_name ='my-aks-service-1'\n",
|
||||
"\n",
|
||||
"aks_service = Webservice.deploy_from_image(workspace = ws,\n",
|
||||
" name = aks_service_name,\n",
|
||||
@@ -415,10 +427,9 @@
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### 7.a. Create Client\n",
|
||||
"The image supports gRPC and the TensorFlow Serving \"predict\" API. We have a client that can call into the docker image to get predictions.\n",
|
||||
"\n",
|
||||
"**Note:** If you chose to use auth_enabled=True when creating your AksWebservice, see documentation [here](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.webservice(class)?view=azure-ml-py#get-keys--) on how to retrieve your keys and use either key as an argument to PredictionClient(...,access_token=key).",
|
||||
"The image supports gRPC and the TensorFlow Serving \"predict\" API. We will create a PredictionClient from the Webservice object that can call into the docker image to get predictions. If you do not have the Webservice object, you can also create [PredictionClient](https://docs.microsoft.com/en-us/python/api/azureml-accel-models/azureml.accel.predictionclient?view=azure-ml-py) directly.\n",
|
||||
"\n",
|
||||
"**Note:** If you chose to use auth_enabled=True when creating your AksWebservice, see documentation [here](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.webservice(class)?view=azure-ml-py#get-keys--) on how to retrieve your keys and use either key as an argument to PredictionClient(...,access_token=key).\n",
|
||||
"**WARNING:** If you are running on Azure Notebooks free compute, you will not be able to make outgoing calls to your service. Try locating your client on a different machine to consume it."
|
||||
]
|
||||
},
|
||||
@@ -429,18 +440,10 @@
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Using the grpc client in AzureML Accelerated Models SDK\n",
|
||||
"from azureml.accel.client import PredictionClient\n",
|
||||
"\n",
|
||||
"address = aks_service.scoring_uri\n",
|
||||
"ssl_enabled = address.startswith(\"https\")\n",
|
||||
"address = address[address.find('/')+2:].strip('/')\n",
|
||||
"port = 443 if ssl_enabled else 80\n",
|
||||
"from azureml.accel import client_from_service\n",
|
||||
"\n",
|
||||
"# Initialize AzureML Accelerated Models client\n",
|
||||
"client = PredictionClient(address=address,\n",
|
||||
" port=port,\n",
|
||||
" use_ssl=ssl_enabled,\n",
|
||||
" service_name=aks_service.name)"
|
||||
"client = client_from_service(aks_service)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -540,7 +543,7 @@
|
||||
"name": "python",
|
||||
"nbconvert_exporter": "python",
|
||||
"pygments_lexer": "ipython3",
|
||||
"version": "3.6.0"
|
||||
"version": "3.7.3"
|
||||
}
|
||||
},
|
||||
"nbformat": 4,
|
||||
|
||||
@@ -0,0 +1,6 @@
|
||||
name: accelerated-models-quickstart
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-accel-models
|
||||
- tensorflow
|
||||
@@ -1,5 +1,12 @@
|
||||
{
|
||||
"cells": [
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
""
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
@@ -410,6 +417,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"%%time\n",
|
||||
"# Launch the training\n",
|
||||
"tf.reset_default_graph()\n",
|
||||
"sess = tf.Session(graph=tf.get_default_graph())\n",
|
||||
@@ -582,11 +590,14 @@
|
||||
"\n",
|
||||
"# Convert model\n",
|
||||
"convert_request = AccelOnnxConverter.convert_tf_model(ws, registered_model, input_tensors, output_tensors)\n",
|
||||
"# If it fails, you can run wait_for_completion again with show_output=True.\n",
|
||||
"convert_request.wait_for_completion(show_output=False)\n",
|
||||
"converted_model = convert_request.result\n",
|
||||
"print(\"\\nSuccessfully converted: \", converted_model.name, converted_model.url, converted_model.version, \n",
|
||||
" converted_model.id, converted_model.created_time, '\\n')\n",
|
||||
"if convert_request.wait_for_completion(show_output = False):\n",
|
||||
" # If the above call succeeded, get the converted model\n",
|
||||
" converted_model = convert_request.result\n",
|
||||
" print(\"\\nSuccessfully converted: \", converted_model.name, converted_model.url, converted_model.version, \n",
|
||||
" converted_model.id, converted_model.created_time, '\\n')\n",
|
||||
"else:\n",
|
||||
" print(\"Model conversion failed. Showing output.\")\n",
|
||||
" convert_request.wait_for_completion(show_output = True)\n",
|
||||
"\n",
|
||||
"# Package into AccelContainerImage\n",
|
||||
"image_config = AccelContainerImage.image_configuration()\n",
|
||||
@@ -655,6 +666,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"%%time\n",
|
||||
"aks_target.wait_for_completion(show_output = True)\n",
|
||||
"print(aks_target.provisioning_state)\n",
|
||||
"print(aks_target.provisioning_errors)"
|
||||
@@ -673,6 +685,7 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"%%time\n",
|
||||
"from azureml.core.webservice import Webservice, AksWebservice\n",
|
||||
"\n",
|
||||
"# Set the web service configuration (for creating a test service, we don't want autoscale enabled)\n",
|
||||
@@ -681,7 +694,7 @@
|
||||
" num_replicas=1,\n",
|
||||
" auth_enabled = False)\n",
|
||||
"\n",
|
||||
"aks_service_name ='my-aks-service'\n",
|
||||
"aks_service_name ='my-aks-service-2'\n",
|
||||
"\n",
|
||||
"aks_service = Webservice.deploy_from_image(workspace = ws,\n",
|
||||
" name = aks_service_name,\n",
|
||||
@@ -700,10 +713,9 @@
|
||||
"\n",
|
||||
"<a id=\"create-client\"></a>\n",
|
||||
"### 9.a. Create Client\n",
|
||||
"The image supports gRPC and the TensorFlow Serving \"predict\" API. We have a client that can call into the docker image to get predictions. \n",
|
||||
"\n",
|
||||
"**Note:** If you chose to use auth_enabled=True when creating your AksWebservice.deploy_configuration(), see documentation [here](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.webservice(class)?view=azure-ml-py#get-keys--) on how to retrieve your keys and use either key as an argument to PredictionClient(...,access_token=key).",
|
||||
"The image supports gRPC and the TensorFlow Serving \"predict\" API. We will create a PredictionClient from the Webservice object that can call into the docker image to get predictions. If you do not have the Webservice object, you can also create [PredictionClient](https://docs.microsoft.com/en-us/python/api/azureml-accel-models/azureml.accel.predictionclient?view=azure-ml-py) directly.\n",
|
||||
"\n",
|
||||
"**Note:** If you chose to use auth_enabled=True when creating your AksWebservice.deploy_configuration(), see documentation [here](https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.webservice(class)?view=azure-ml-py#get-keys--) on how to retrieve your keys and use either key as an argument to PredictionClient(...,access_token=key).\n",
|
||||
"**WARNING:** If you are running on Azure Notebooks free compute, you will not be able to make outgoing calls to your service. Try locating your client on a different machine to consume it."
|
||||
]
|
||||
},
|
||||
@@ -714,18 +726,10 @@
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"# Using the grpc client in AzureML Accelerated Models SDK\n",
|
||||
"from azureml.accel.client import PredictionClient\n",
|
||||
"\n",
|
||||
"address = aks_service.scoring_uri\n",
|
||||
"ssl_enabled = address.startswith(\"https\")\n",
|
||||
"address = address[address.find('/')+2:].strip('/')\n",
|
||||
"port = 443 if ssl_enabled else 80\n",
|
||||
"from azureml.accel import client_from_service\n",
|
||||
"\n",
|
||||
"# Initialize AzureML Accelerated Models client\n",
|
||||
"client = PredictionClient(address=address,\n",
|
||||
" port=port,\n",
|
||||
" use_ssl=ssl_enabled,\n",
|
||||
" service_name=aks_service.name)"
|
||||
"client = client_from_service(aks_service)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -854,7 +858,7 @@
|
||||
"name": "python",
|
||||
"nbconvert_exporter": "python",
|
||||
"pygments_lexer": "ipython3",
|
||||
"version": "3.6.0"
|
||||
"version": "3.5.6"
|
||||
}
|
||||
},
|
||||
"nbformat": 4,
|
||||
|
||||
@@ -0,0 +1,9 @@
|
||||
name: accelerated-models-training
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- azureml-accel-models
|
||||
- tensorflow
|
||||
- keras
|
||||
- tqdm
|
||||
- sklearn
|
||||
@@ -13,7 +13,7 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
""
|
||||
""
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -77,7 +77,7 @@
|
||||
"from azureml.core import Workspace\n",
|
||||
"\n",
|
||||
"ws = Workspace.from_config()\n",
|
||||
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep = '\\n')"
|
||||
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep='\\n')"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -108,11 +108,41 @@
|
||||
"source": [
|
||||
"from azureml.core.model import Model\n",
|
||||
"\n",
|
||||
"model = Model.register(model_path = \"sklearn_regression_model.pkl\",\n",
|
||||
" model_name = \"sklearn_regression_model.pkl\",\n",
|
||||
" tags = {'area': \"diabetes\", 'type': \"regression\"},\n",
|
||||
" description = \"Ridge regression model to predict diabetes\",\n",
|
||||
" workspace = ws)"
|
||||
"model = Model.register(model_path=\"sklearn_regression_model.pkl\",\n",
|
||||
" model_name=\"sklearn_regression_model.pkl\",\n",
|
||||
" tags={'area': \"diabetes\", 'type': \"regression\"},\n",
|
||||
" description=\"Ridge regression model to predict diabetes\",\n",
|
||||
" workspace=ws)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Create Environment"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"You can now create and/or use an Environment object when deploying a Webservice. The Environment can have been previously registered with your Workspace, or it will be registered with it as a part of the Webservice deployment. Only Environments that were created using azureml-defaults version 1.0.48 or later will work with this new handling however.\n",
|
||||
"\n",
|
||||
"More information can be found in our [using environments notebook](../training/using-environments/using-environments.ipynb)."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.core import Environment\n",
|
||||
"\n",
|
||||
"env = Environment.from_conda_specification(name='deploytocloudenv', file_path='myenv.yml')\n",
|
||||
"\n",
|
||||
"# This is optional at this point\n",
|
||||
"# env.register(workspace=ws)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -153,10 +183,7 @@
|
||||
"source": [
|
||||
"from azureml.core.model import InferenceConfig\n",
|
||||
"\n",
|
||||
"inference_config = InferenceConfig(runtime= \"python\", \n",
|
||||
" entry_script=\"score.py\",\n",
|
||||
" conda_file=\"myenv.yml\", \n",
|
||||
" extra_docker_file_steps=\"helloworld.txt\")"
|
||||
"inference_config = InferenceConfig(entry_script=\"score.py\", environment=env)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -171,13 +198,17 @@
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"metadata": {
|
||||
"tags": [
|
||||
"azuremlexception-remarks-sample"
|
||||
]
|
||||
},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.core.webservice import AciWebservice, Webservice\n",
|
||||
"from azureml.exceptions import WebserviceException\n",
|
||||
"\n",
|
||||
"deployment_config = AciWebservice.deploy_configuration(cpu_cores = 1, memory_gb = 1)\n",
|
||||
"deployment_config = AciWebservice.deploy_configuration(cpu_cores=1, memory_gb=1)\n",
|
||||
"aci_service_name = 'aciservice1'\n",
|
||||
"\n",
|
||||
"try:\n",
|
||||
@@ -215,7 +246,7 @@
|
||||
" [10,9,8,7,6,5,4,3,2,1]\n",
|
||||
"]})\n",
|
||||
"\n",
|
||||
"test_sample_encoded = bytes(test_sample,encoding = 'utf8')\n",
|
||||
"test_sample_encoded = bytes(test_sample, encoding='utf8')\n",
|
||||
"prediction = service.run(input_data=test_sample_encoded)\n",
|
||||
"print(prediction)"
|
||||
]
|
||||
@@ -247,15 +278,38 @@
|
||||
"source": [
|
||||
"### Model Profiling\n",
|
||||
"\n",
|
||||
"you can also take advantage of profiling feature for model\n",
|
||||
"You can also take advantage of the profiling feature to estimate CPU and memory requirements for models.\n",
|
||||
"\n",
|
||||
"```python\n",
|
||||
"\n",
|
||||
"profile = model.profile(ws, \"profilename\", [model], inference_config, test_sample)\n",
|
||||
"profile = Model.profile(ws, \"profilename\", [model], inference_config, test_sample)\n",
|
||||
"profile.wait_for_profiling(True)\n",
|
||||
"profiling_results = profile.get_results()\n",
|
||||
"print(profiling_results)\n",
|
||||
"```"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Model Packaging\n",
|
||||
"\n",
|
||||
"If you want to build a Docker image that encapsulates your model and its dependencies, you can use the model packaging option. The output image will be pushed to your workspace's ACR.\n",
|
||||
"\n",
|
||||
"You must include an Environment object in your inference configuration to use `Model.package()`.\n",
|
||||
"\n",
|
||||
"```python\n",
|
||||
"package = Model.package(ws, [model], inference_config)\n",
|
||||
"package.wait_for_creation(show_output=True) # Or show_output=False to hide the Docker build logs.\n",
|
||||
"package.pull()\n",
|
||||
"```\n",
|
||||
"\n",
|
||||
"Instead of a fully-built image, you can also generate a Dockerfile and download all the assets needed to build an image on top of your Environment.\n",
|
||||
"\n",
|
||||
"```python\n",
|
||||
"package = Model.package(ws, [model], inference_config, generate_dockerfile=True)\n",
|
||||
"package.wait_for_creation(show_output=True)\n",
|
||||
"package.save(\"./local_context_dir\")\n",
|
||||
"```"
|
||||
]
|
||||
}
|
||||
@@ -0,0 +1,4 @@
|
||||
name: model-register-and-deploy
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
@@ -13,7 +13,7 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
""
|
||||
""
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -72,7 +72,7 @@
|
||||
"from azureml.core import Workspace\n",
|
||||
"\n",
|
||||
"ws = Workspace.from_config()\n",
|
||||
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep = '\\n')"
|
||||
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep='\\n')"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -103,11 +103,11 @@
|
||||
"source": [
|
||||
"from azureml.core.model import Model\n",
|
||||
"\n",
|
||||
"model = Model.register(model_path = \"sklearn_regression_model.pkl\",\n",
|
||||
" model_name = \"sklearn_regression_model.pkl\",\n",
|
||||
" tags = {'area': \"diabetes\", 'type': \"regression\"},\n",
|
||||
" description = \"Ridge regression model to predict diabetes\",\n",
|
||||
" workspace = ws)"
|
||||
"model = Model.register(model_path=\"sklearn_regression_model.pkl\",\n",
|
||||
" model_name=\"sklearn_regression_model.pkl\",\n",
|
||||
" tags={'area': \"diabetes\", 'type': \"regression\"},\n",
|
||||
" description=\"Ridge regression model to predict diabetes\",\n",
|
||||
" workspace=ws)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -127,10 +127,10 @@
|
||||
"\n",
|
||||
"source_directory = \"C:/abc\"\n",
|
||||
"\n",
|
||||
"os.makedirs(source_directory, exist_ok = True)\n",
|
||||
"os.makedirs(\"C:/abc/x/y\", exist_ok = True)\n",
|
||||
"os.makedirs(\"C:/abc/env\", exist_ok = True)\n",
|
||||
"os.makedirs(\"C:/abc/dockerstep\", exist_ok = True)"
|
||||
"os.makedirs(source_directory, exist_ok=True)\n",
|
||||
"os.makedirs(\"C:/abc/x/y\", exist_ok=True)\n",
|
||||
"os.makedirs(\"C:/abc/env\", exist_ok=True)\n",
|
||||
"os.makedirs(\"C:/abc/dockerstep\", exist_ok=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -253,7 +253,7 @@
|
||||
"from azureml.core.model import InferenceConfig\n",
|
||||
"\n",
|
||||
"inference_config = InferenceConfig(source_directory=\"C:/abc\",\n",
|
||||
" runtime= \"python\", \n",
|
||||
" runtime=\"python\", \n",
|
||||
" entry_script=\"x/y/score.py\",\n",
|
||||
" conda_file=\"env/myenv.yml\", \n",
|
||||
" extra_docker_file_steps=\"dockerstep/customDockerStep.txt\")"
|
||||
@@ -271,15 +271,10 @@
|
||||
"\n",
|
||||
"NOTE:\n",
|
||||
"\n",
|
||||
"we require docker running with linux container. If you are running Docker for Windows, you need to ensure the Linux Engine is running\n",
|
||||
"The Docker image runs as a Linux container. If you are running Docker for Windows, you need to ensure the Linux Engine is running:\n",
|
||||
"\n",
|
||||
" powershell command to switch to linux engine\n",
|
||||
" & 'C:\\Program Files\\Docker\\Docker\\DockerCli.exe' -SwitchLinuxEngine\n",
|
||||
"\n",
|
||||
"and c drive is shared https://docs.docker.com/docker-for-windows/#shared-drives\n",
|
||||
"sometimes you have to reshare c drive as docker \n",
|
||||
"\n",
|
||||
"<img src=\"./dockerSharedDrive.JPG\" align=\"left\"/>"
|
||||
" # PowerShell command to switch to Linux engine\n",
|
||||
" & 'C:\\Program Files\\Docker\\Docker\\DockerCli.exe' -SwitchLinuxEngine"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -295,7 +290,7 @@
|
||||
"source": [
|
||||
"from azureml.core.webservice import LocalWebservice\n",
|
||||
"\n",
|
||||
"#this is optional, if not provided we choose random port\n",
|
||||
"# This is optional, if not provided Docker will choose a random unused port.\n",
|
||||
"deployment_config = LocalWebservice.deploy_configuration(port=6789)\n",
|
||||
"\n",
|
||||
"local_service = Model.deploy(ws, \"test\", [model], inference_config, deployment_config)\n",
|
||||
@@ -427,9 +422,8 @@
|
||||
"local_service.reload()\n",
|
||||
"print(\"--------------------------------------------------------------\")\n",
|
||||
"\n",
|
||||
"# after reload now if you call run this will return updated return message\n",
|
||||
"\n",
|
||||
"print(local_service.run(input_data=sample_input))"
|
||||
"# After calling reload(), run() will return the updated message.\n",
|
||||
"local_service.run(input_data=sample_input)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -442,9 +436,9 @@
|
||||
"\n",
|
||||
"```python\n",
|
||||
"\n",
|
||||
"local_service.update(models = [SomeOtherModelObject],\n",
|
||||
" deployment_config = local_config,\n",
|
||||
" inference_config = inference_config)\n",
|
||||
"local_service.update(models=[SomeOtherModelObject],\n",
|
||||
" deployment_config=local_config,\n",
|
||||
" inference_config=inference_config)\n",
|
||||
"```"
|
||||
]
|
||||
},
|
||||
@@ -468,7 +462,7 @@
|
||||
"metadata": {
|
||||
"authors": [
|
||||
{
|
||||
"name": "raymondl"
|
||||
"name": "keriehm"
|
||||
}
|
||||
],
|
||||
"kernelspec": {
|
||||
@@ -13,7 +13,7 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
""
|
||||
""
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -68,7 +68,7 @@
|
||||
"from azureml.core import Workspace\n",
|
||||
"\n",
|
||||
"ws = Workspace.from_config()\n",
|
||||
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep = '\\n')"
|
||||
"print(ws.name, ws.resource_group, ws.location, ws.subscription_id, sep='\\n')"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -99,11 +99,31 @@
|
||||
"source": [
|
||||
"from azureml.core.model import Model\n",
|
||||
"\n",
|
||||
"model = Model.register(model_path = \"sklearn_regression_model.pkl\",\n",
|
||||
" model_name = \"sklearn_regression_model.pkl\",\n",
|
||||
" tags = {'area': \"diabetes\", 'type': \"regression\"},\n",
|
||||
" description = \"Ridge regression model to predict diabetes\",\n",
|
||||
" workspace = ws)"
|
||||
"model = Model.register(model_path=\"sklearn_regression_model.pkl\",\n",
|
||||
" model_name=\"sklearn_regression_model.pkl\",\n",
|
||||
" tags={'area': \"diabetes\", 'type': \"regression\"},\n",
|
||||
" description=\"Ridge regression model to predict diabetes\",\n",
|
||||
" workspace=ws)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Create Environment"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.core.conda_dependencies import CondaDependencies\n",
|
||||
"from azureml.core.environment import Environment\n",
|
||||
"\n",
|
||||
"environment = Environment(\"LocalDeploy\")\n",
|
||||
"environment.python.conda_dependencies = CondaDependencies(\"myenv.yml\")"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -121,9 +141,8 @@
|
||||
"source": [
|
||||
"from azureml.core.model import InferenceConfig\n",
|
||||
"\n",
|
||||
"inference_config = InferenceConfig(runtime= \"python\", \n",
|
||||
" entry_script=\"score.py\",\n",
|
||||
" conda_file=\"myenv.yml\")"
|
||||
"inference_config = InferenceConfig(entry_script=\"score.py\",\n",
|
||||
" environment=environment)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -138,15 +157,10 @@
|
||||
"\n",
|
||||
"NOTE:\n",
|
||||
"\n",
|
||||
"we require docker running with linux container. If you are running Docker for Windows, you need to ensure the Linux Engine is running\n",
|
||||
"The Docker image runs as a Linux container. If you are running Docker for Windows, you need to ensure the Linux Engine is running:\n",
|
||||
"\n",
|
||||
" powershell command to switch to linux engine\n",
|
||||
" & 'C:\\Program Files\\Docker\\Docker\\DockerCli.exe' -SwitchLinuxEngine\n",
|
||||
"\n",
|
||||
"and c drive is shared https://docs.docker.com/docker-for-windows/#shared-drives\n",
|
||||
"sometimes you have to reshare c drive as docker \n",
|
||||
"\n",
|
||||
"<img src=\"./dockerSharedDrive.JPG\" align=\"left\"/>"
|
||||
" # PowerShell command to switch to Linux engine\n",
|
||||
" & 'C:\\Program Files\\Docker\\Docker\\DockerCli.exe' -SwitchLinuxEngine"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -157,7 +171,7 @@
|
||||
"source": [
|
||||
"from azureml.core.webservice import LocalWebservice\n",
|
||||
"\n",
|
||||
"#this is optional, if not provided we choose random port\n",
|
||||
"# This is optional, if not provided Docker will choose a random unused port.\n",
|
||||
"deployment_config = LocalWebservice.deploy_configuration(port=6789)\n",
|
||||
"\n",
|
||||
"local_service = Model.deploy(ws, \"test\", [model], inference_config, deployment_config)\n",
|
||||
@@ -221,7 +235,7 @@
|
||||
"\n",
|
||||
"sample_input = bytes(sample_input, encoding='utf-8')\n",
|
||||
"\n",
|
||||
"print(local_service.run(input_data=sample_input))"
|
||||
"local_service.run(input_data=sample_input)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -282,9 +296,8 @@
|
||||
"local_service.reload()\n",
|
||||
"print(\"--------------------------------------------------------------\")\n",
|
||||
"\n",
|
||||
"# after reload now if you call run this will return updated return message\n",
|
||||
"\n",
|
||||
"print(local_service.run(input_data=sample_input))"
|
||||
"# After calling reload(), run() will return the updated message.\n",
|
||||
"local_service.run(input_data=sample_input)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -296,10 +309,9 @@
|
||||
"If you want to change your model(s), Conda dependencies, or deployment configuration, call `update()` to rebuild the Docker image.\n",
|
||||
"\n",
|
||||
"```python\n",
|
||||
"\n",
|
||||
"local_service.update(models = [SomeOtherModelObject],\n",
|
||||
" deployment_config = local_config,\n",
|
||||
" inference_config = inference_config)\n",
|
||||
"local_service.update(models=[SomeOtherModelObject],\n",
|
||||
" inference_config=inference_config,\n",
|
||||
" deployment_config=local_config)\n",
|
||||
"```"
|
||||
]
|
||||
},
|
||||
@@ -323,7 +335,7 @@
|
||||
"metadata": {
|
||||
"authors": [
|
||||
{
|
||||
"name": "raymondl"
|
||||
"name": "keriehm"
|
||||
}
|
||||
],
|
||||
"kernelspec": {
|
||||
@@ -22,7 +22,7 @@
|
||||
"If you want to log custom traces, you will follow the standard deplyment process for AKS and you will:\n",
|
||||
"1. Update scoring file.\n",
|
||||
"2. Update aks configuration.\n",
|
||||
"3. Build new image and deploy it. "
|
||||
"3. Deploy the model with this new configuration. "
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -178,7 +178,7 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## 6. Create your new Image"
|
||||
"## 6. Create Inference Configuration"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -187,22 +187,11 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.core.image import ContainerImage\n",
|
||||
"from azureml.core.model import InferenceConfig\n",
|
||||
"\n",
|
||||
"image_config = ContainerImage.image_configuration(execution_script = \"score.py\",\n",
|
||||
" runtime = \"python\",\n",
|
||||
" conda_file = \"myenv.yml\",\n",
|
||||
" description = \"Image with ridge regression model\",\n",
|
||||
" tags = {'area': \"diabetes\", 'type': \"regression\"}\n",
|
||||
" )\n",
|
||||
"\n",
|
||||
"image = ContainerImage.create(name = \"myimage1\",\n",
|
||||
" # this is the model object\n",
|
||||
" models = [model],\n",
|
||||
" image_config = image_config,\n",
|
||||
" workspace = ws)\n",
|
||||
"\n",
|
||||
"image.wait_for_creation(show_output = True)"
|
||||
"inference_config = InferenceConfig(runtime= \"python\", \n",
|
||||
" entry_script=\"score.py\",\n",
|
||||
" conda_file=\"myenv.yml\")"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -220,7 +209,7 @@
|
||||
"source": [
|
||||
"from azureml.core.webservice import AciWebservice\n",
|
||||
"\n",
|
||||
"aciconfig = AciWebservice.deploy_configuration(cpu_cores = 1, \n",
|
||||
"aci_deployment_config = AciWebservice.deploy_configuration(cpu_cores = 1, \n",
|
||||
" memory_gb = 1, \n",
|
||||
" tags = {'area': \"diabetes\", 'type': \"regression\"}, \n",
|
||||
" description = 'Predict diabetes using regression model',\n",
|
||||
@@ -236,11 +225,7 @@
|
||||
"from azureml.core.webservice import Webservice\n",
|
||||
"\n",
|
||||
"aci_service_name = 'my-aci-service-4'\n",
|
||||
"print(aci_service_name)\n",
|
||||
"aci_service = Webservice.deploy_from_image(deployment_config = aciconfig,\n",
|
||||
" image = image,\n",
|
||||
" name = aci_service_name,\n",
|
||||
" workspace = ws)\n",
|
||||
"aci_service = Model.deploy(ws, aci_service_name, [model], inference_config, aci_deployment_config)\n",
|
||||
"aci_service.wait_for_deployment(True)\n",
|
||||
"print(aci_service.state)"
|
||||
]
|
||||
@@ -361,7 +346,7 @@
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"#Set the web service configuration\n",
|
||||
"aks_config = AksWebservice.deploy_configuration(enable_app_insights=True)"
|
||||
"aks_deployment_config = AksWebservice.deploy_configuration(enable_app_insights=True)"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -379,12 +364,12 @@
|
||||
"source": [
|
||||
"if aks_target.provisioning_state== \"Succeeded\": \n",
|
||||
" aks_service_name ='aks-w-dc5'\n",
|
||||
" aks_service = Webservice.deploy_from_image(workspace = ws, \n",
|
||||
" name = aks_service_name,\n",
|
||||
" image = image,\n",
|
||||
" deployment_config = aks_config,\n",
|
||||
" deployment_target = aks_target\n",
|
||||
" )\n",
|
||||
" aks_service = Model.deploy(ws,\n",
|
||||
" aks_service_name, \n",
|
||||
" [model], \n",
|
||||
" inference_config, \n",
|
||||
" aks_deployment_config, \n",
|
||||
" deployment_target = aks_target) \n",
|
||||
" aks_service.wait_for_deployment(show_output = True)\n",
|
||||
" print(aks_service.state)\n",
|
||||
"else:\n",
|
||||
@@ -464,7 +449,6 @@
|
||||
"%%time\n",
|
||||
"aks_service.delete()\n",
|
||||
"aci_service.delete()\n",
|
||||
"image.delete()\n",
|
||||
"model.delete()"
|
||||
]
|
||||
}
|
||||
|
||||
@@ -0,0 +1,4 @@
|
||||
name: enable-app-insights-in-production-service
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
@@ -0,0 +1,4 @@
|
||||
name: enable-data-collection-for-models-in-aks
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
@@ -243,7 +243,7 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Create container image\n",
|
||||
"### Setting up inference configuration\n",
|
||||
"First we create a YAML file that specifies which dependencies we would like to see in our container."
|
||||
]
|
||||
},
|
||||
@@ -265,7 +265,7 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"Then we have Azure ML create the container. This step will likely take a few minutes."
|
||||
"Then we create the inference configuration."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -274,48 +274,19 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.core.image import ContainerImage\n",
|
||||
"from azureml.core.model import InferenceConfig\n",
|
||||
"\n",
|
||||
"image_config = ContainerImage.image_configuration(execution_script = \"score.py\",\n",
|
||||
" runtime = \"python\",\n",
|
||||
" conda_file = \"myenv.yml\",\n",
|
||||
" docker_file = \"Dockerfile\",\n",
|
||||
" description = \"TinyYOLO ONNX Demo\",\n",
|
||||
" tags = {\"demo\": \"onnx\"}\n",
|
||||
" )\n",
|
||||
"\n",
|
||||
"\n",
|
||||
"image = ContainerImage.create(name = \"onnxyolo\",\n",
|
||||
" models = [model],\n",
|
||||
" image_config = image_config,\n",
|
||||
" workspace = ws)\n",
|
||||
"\n",
|
||||
"image.wait_for_creation(show_output = True)"
|
||||
"inference_config = InferenceConfig(runtime= \"python\", \n",
|
||||
" entry_script=\"score.py\",\n",
|
||||
" conda_file=\"myenv.yml\",\n",
|
||||
" extra_docker_file_steps = \"Dockerfile\")"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"In case you need to debug your code, the next line of code accesses the log file."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"print(image.image_build_log_uri)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"We're all set! Let's get our model chugging.\n",
|
||||
"\n",
|
||||
"### Deploy the container image"
|
||||
"### Deploy the model"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -336,7 +307,7 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"The following cell will likely take a few minutes to run as well."
|
||||
"The following cell will take a few minutes to run as the model gets packaged up and deployed to ACI."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -348,14 +319,9 @@
|
||||
"from azureml.core.webservice import Webservice\n",
|
||||
"from random import randint\n",
|
||||
"\n",
|
||||
"aci_service_name = 'onnx-tinyyolo'+str(randint(0,100))\n",
|
||||
"aci_service_name = 'my-aci-service-15ad'\n",
|
||||
"print(\"Service\", aci_service_name)\n",
|
||||
"\n",
|
||||
"aci_service = Webservice.deploy_from_image(deployment_config = aciconfig,\n",
|
||||
" image = image,\n",
|
||||
" name = aci_service_name,\n",
|
||||
" workspace = ws)\n",
|
||||
"\n",
|
||||
"aci_service = Model.deploy(ws, aci_service_name, [model], inference_config, aciconfig)\n",
|
||||
"aci_service.wait_for_deployment(True)\n",
|
||||
"print(aci_service.state)"
|
||||
]
|
||||
|
||||
@@ -0,0 +1,6 @@
|
||||
name: onnx-convert-aml-deploy-tinyyolo
|
||||
dependencies:
|
||||
- pip:
|
||||
- azureml-sdk
|
||||
- git+https://github.com/apple/coremltools
|
||||
- onnxmltools==1.3.1
|
||||
@@ -54,7 +54,7 @@
|
||||
"\n",
|
||||
"### 3. Download sample data and pre-trained ONNX model from ONNX Model Zoo.\n",
|
||||
"\n",
|
||||
"In the following lines of code, we download [the trained ONNX Emotion FER+ model and corresponding test data](https://github.com/onnx/models/tree/master/emotion_ferplus) and place them in the same folder as this tutorial notebook. For more information about the FER+ dataset, please visit Microsoft Researcher Emad Barsoum's [FER+ source data repository](https://github.com/ebarsoum/FERPlus)."
|
||||
"In the following lines of code, we download [the trained ONNX Emotion FER+ model and corresponding test data](https://github.com/onnx/models/tree/master/vision/body_analysis/emotion_ferplus) and place them in the same folder as this tutorial notebook. For more information about the FER+ dataset, please visit Microsoft Researcher Emad Barsoum's [FER+ source data repository](https://github.com/ebarsoum/FERPlus)."
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -176,7 +176,7 @@
|
||||
"source": [
|
||||
"### ONNX FER+ Model Methodology\n",
|
||||
"\n",
|
||||
"The image classification model we are using is pre-trained using Microsoft's deep learning cognitive toolkit, [CNTK](https://github.com/Microsoft/CNTK), from the [ONNX model zoo](http://github.com/onnx/models). The model zoo has many other models that can be deployed on cloud providers like AzureML without any additional training. To ensure that our cloud deployed model works, we use testing data from the well-known FER+ data set, provided as part of the [trained Emotion Recognition model](https://github.com/onnx/models/tree/master/emotion_ferplus) in the ONNX model zoo.\n",
|
||||
"The image classification model we are using is pre-trained using Microsoft's deep learning cognitive toolkit, [CNTK](https://github.com/Microsoft/CNTK), from the [ONNX model zoo](http://github.com/onnx/models). The model zoo has many other models that can be deployed on cloud providers like AzureML without any additional training. To ensure that our cloud deployed model works, we use testing data from the well-known FER+ data set, provided as part of the [trained Emotion Recognition model](https://github.com/onnx/models/tree/master/vision/body_analysis/emotion_ferplus) in the ONNX model zoo.\n",
|
||||
"\n",
|
||||
"The original Facial Emotion Recognition (FER) Dataset was released in 2013 by Pierre-Luc Carrier and Aaron Courville as part of a [Kaggle Competition](https://www.kaggle.com/c/challenges-in-representation-learning-facial-expression-recognition-challenge/data), but some of the labels are not entirely appropriate for the expression. In the FER+ Dataset, each photo was evaluated by at least 10 croud sourced reviewers, creating a more accurate basis for ground truth. \n",
|
||||
"\n",
|
||||
@@ -341,9 +341,7 @@
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"### Create the Container Image\n",
|
||||
"\n",
|
||||
"This step will likely take a few minutes."
|
||||
"### Setup inference configuration"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -352,48 +350,19 @@
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from azureml.core.image import ContainerImage\n",
|
||||
"from azureml.core.model import InferenceConfig\n",
|
||||
"\n",
|
||||
"image_config = ContainerImage.image_configuration(execution_script = \"score.py\",\n",
|
||||
" runtime = \"python\",\n",
|
||||
" conda_file = \"myenv.yml\",\n",
|
||||
" docker_file = \"Dockerfile\",\n",
|
||||
" description = \"Emotion ONNX Runtime container\",\n",
|
||||
" tags = {\"demo\": \"onnx\"})\n",
|
||||
"\n",
|
||||
"\n",
|
||||
"image = ContainerImage.create(name = \"onnximage\",\n",
|
||||
" # this is the model object\n",
|
||||
" models = [model],\n",
|
||||
" image_config = image_config,\n",
|
||||
" workspace = ws)\n",
|
||||
"\n",
|
||||
"image.wait_for_creation(show_output = True)"
|
||||
"inference_config = InferenceConfig(runtime= \"python\", \n",
|
||||
" entry_script=\"score.py\",\n",
|
||||
" conda_file=\"myenv.yml\",\n",
|
||||
" extra_docker_file_steps = \"Dockerfile\")"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"In case you need to debug your code, the next line of code accesses the log file."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"print(image.image_build_log_uri)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"We're all done specifying what we want our virtual machine to do. Let's configure and deploy our container image.\n",
|
||||
"\n",
|
||||
"### Deploy the container image"
|
||||
"### Deploy the model"
|
||||
]
|
||||
},
|
||||
{
|
||||
@@ -410,6 +379,13 @@
|
||||
" description = 'ONNX for emotion recognition model')"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"The following cell will likely take a few minutes to run as well."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
@@ -420,23 +396,11 @@
|
||||
"\n",
|
||||
"aci_service_name = 'onnx-demo-emotion'\n",
|
||||
"print(\"Service\", aci_service_name)\n",
|
||||
"\n",
|
||||
"aci_service = Webservice.deploy_from_image(deployment_config = aciconfig,\n",
|
||||
" image = image,\n",
|
||||
" name = aci_service_name,\n",
|
||||
" workspace = ws)\n",
|
||||
"\n",
|
||||
"aci_service = Model.deploy(ws, aci_service_name, [model], inference_config, aciconfig)\n",
|
||||
"aci_service.wait_for_deployment(True)\n",
|
||||
"print(aci_service.state)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"The following cell will likely take a few minutes to run as well."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
@@ -470,7 +434,7 @@
|
||||
"\n",
|
||||
"### Useful Helper Functions\n",
|
||||
"\n",
|
||||
"We preprocess and postprocess our data (see score.py file) using the helper functions specified in the [ONNX FER+ Model page in the Model Zoo repository](https://github.com/onnx/models/tree/master/emotion_ferplus)."
|
||||
"We preprocess and postprocess our data (see score.py file) using the helper functions specified in the [ONNX FER+ Model page in the Model Zoo repository](https://github.com/onnx/models/tree/master/vision/body_analysis/emotion_ferplus)."
|
||||
]
|
||||
},
|
||||
{
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user